Lsi06G015800 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CACATATCAGATTCTCAACTCCAATGGGGTCACAGGTCAAATCTGTCTGTATTTTCTTGTATATAAAATGACAGCCATTCACGAGCCTCATAGACGGTTTCCACTAATCATTAACTCTGAGAGAGAGCTAACCAAGTAGAGCAAGGGATAAACACAGCCAATATAGGTACCCCAAATGCAGCTCTTTTATGGAGGAGCTTTTGTACAAACTCCACATCAAACACATCTCTCTCCCTTATTTCCTGTCTATAAGACCAGCTTCAAAAACTTACTCAATAACCCAGAAAAGCTAAAGAAGCAAAGCCTTCACTAAGATGGGTGTATGCTCAAGCAAAGATGGGAGTGATATTTGTGAAGATGATGTTAAAGGATTGAAAGAAAAGATAAGGCTGCTTAGAGAGGAAGTGAGGGGAGTAATGTCTGAGATGGATAAAGAGACTAAAGCCCATGAGAAAGATATGGTGGTTTTTGCATTTAAGGAGGCAGGTTGGAAAACAGAGAAAAAGAGGCTCAAAGAGGAGGTTAAGATGTTGAGGAAGAAGGTAAAAGAGAGTATTACAGAGATTGAAGAAGGAAATTTTGGAGAAAAGACTGCAACAGAATGGGAAATGGAGGGAACTCCAAATTCAATCTTTGAGCAGATACAACAAGAAAGAGCGCGAAGAGATGAAGCCATTGAGAAGTGGAAGCAACTTTATCACGCTATCAAGATTGAGCTTGATGACCTAATTCAGAGGACACATAATGGTATGACTATGATCTCATCTTAAAATCTTATTTTCCCTTTGTTTCTGAATTTTTTGTTGATTGTCTTTCAATTCACTAGTTTAAGCTCATGATTAGAGATTAATGAAGGCTAGCAAAAAACTAAGACTGGAAAAATTCAATAAATGAACATTAGATCTTCCATCACTAACAGGCACTCTAATCATTTGCTTTGATAGGAGATGGATTATACTGGGGAGCGACTGAGAGGACAGAAGCACTAAAAACAGAACTACAAGCAAAGGAGGAGACCATAAAAGCCCTCAAAGAACAGGTAGTTTCAATGGAGCAAGAAAAATATAAGAGGAACAGAGAAATTGACATACTGAGGCAAAGCTTGAGAATTATGACCAGTAAGAAGGAACAGCAGATAGAACCTTTCCATAAATGCGTCTGTAAGTAACCTGCCAATGAAGTAGGCATGAAAACAGAATTTTCAATACCACATTAGAATTAAGAACAAATAATGAAATGCCAATTGGAACTGTTACTAGTTGTAAATGTGTCCAGGAAGGTTGTTACCTTTGCCCATTTCAACCCAAATGTTATTCTCATTATCATTTTGTTGGCATGGTCCAAAAGGTAAACATTCTTGTTCTTTAG CACATATCAGATTCTCAACTCCAATGGGGTCACAGGTCAAATCTGTCTGTATTTTCTTGTATATAAAATGACAGCCATTCACGAGCCTCATAGACGGTTTCCACTAATCATTAACTCTGAGAGAGAGCTAACCAAGTAGAGCAAGGGATAAACACAGCCAATATAGGTACCCCAAATGCAGCTCTTTTATGGAGGAGCTTTTGTACAAACTCCACATCAAACACATCTCTCTCCCTTATTTCCTGTCTATAAGACCAGCTTCAAAAACTTACTCAATAACCCAGAAAAGCTAAAGAAGCAAAGCCTTCACTAAGATGGGTGTATGCTCAAGCAAAGATGGGAGTGATATTTGTGAAGATGATGTTAAAGGATTGAAAGAAAAGATAAGGCTGCTTAGAGAGGAAGTGAGGGGAGTAATGTCTGAGATGGATAAAGAGACTAAAGCCCATGAGAAAGATATGGTGGTTTTTGCATTTAAGGAGGCAGGTTGGAAAACAGAGAAAAAGAGGCTCAAAGAGGAGGTTAAGATGTTGAGGAAGAAGGTAAAAGAGAGTATTACAGAGATTGAAGAAGGAAATTTTGGAGAAAAGACTGCAACAGAATGGGAAATGGAGGGAACTCCAAATTCAATCTTTGAGCAGATACAACAAGAAAGAGCGCGAAGAGATGAAGCCATTGAGAAGTGGAAGCAACTTTATCACGCTATCAAGATTGAGCTTGATGACCTAATTCAGAGGACACATAATGGAGATGGATTATACTGGGGAGCGACTGAGAGGACAGAAGCACTAAAAACAGAACTACAAGCAAAGGAGGAGACCATAAAAGCCCTCAAAGAACAGGTAGTTTCAATGGAGCAAGAAAAATATAAGAGGAACAGAGAAATTGACATACTGAGGCAAAGCTTGAGAATTATGACCAAATTAAGAACAAATAATGAAATGCCAATTGGAACTGTTACTAGTTGTAAATGTGTCCAGGAAGGTTGTTACCTTTGCCCATTTCAACCCAAATGTTATTCTCATTATCATTTTGTTGGCATGGTCCAAAAGGTAAACATTCTTGTTCTTTAG ATGGGTGTATGCTCAAGCAAAGATGGGAGTGATATTTGTGAAGATGATGTTAAAGGATTGAAAGAAAAGATAAGGCTGCTTAGAGAGGAAGTGAGGGGAGTAATGTCTGAGATGGATAAAGAGACTAAAGCCCATGAGAAAGATATGGTGGTTTTTGCATTTAAGGAGGCAGGTTGGAAAACAGAGAAAAAGAGGCTCAAAGAGGAGGTTAAGATGTTGAGGAAGAAGGTAAAAGAGAGTATTACAGAGATTGAAGAAGGAAATTTTGGAGAAAAGACTGCAACAGAATGGGAAATGGAGGGAACTCCAAATTCAATCTTTGAGCAGATACAACAAGAAAGAGCGCGAAGAGATGAAGCCATTGAGAAGTGGAAGCAACTTTATCACGCTATCAAGATTGAGCTTGATGACCTAATTCAGAGGACACATAATGGAGATGGATTATACTGGGGAGCGACTGAGAGGACAGAAGCACTAAAAACAGAACTACAAGCAAAGGAGGAGACCATAAAAGCCCTCAAAGAACAGGTAGTTTCAATGGAGCAAGAAAAATATAAGAGGAACAGAGAAATTGACATACTGAGGCAAAGCTTGAGAATTATGACCAAATTAAGAACAAATAATGAAATGCCAATTGGAACTGTTACTAGTTGTAAATGTGTCCAGGAAGGTTGTTACCTTTGCCCATTTCAACCCAAATGTTATTCTCATTATCATTTTGTTGGCATGGTCCAAAAGGTAAACATTCTTGTTCTTTAG MGVCSSKDGSDICEDDVKGLKEKIRLLREEVRGVMSEMDKETKAHEKDMVVFAFKEAGWKTEKKRLKEEVKMLRKKVKESITEIEEGNFGEKTATEWEMEGTPNSIFEQIQQERARRDEAIEKWKQLYHAIKIELDDLIQRTHNGDGLYWGATERTEALKTELQAKEETIKALKEQVVSMEQEKYKRNREIDILRQSLRIMTKLRTNNEMPIGTVTSCKCVQEGCYLCPFQPKCYSHYHFVGMVQKVNILVL Homology
BLAST of Lsi06G015800 vs. ExPASy Swiss-Prot
Match: Q8IIG7 (Uncharacterized protein PF11_0207 OS=Plasmodium falciparum (isolate 3D7) OX=36329 GN=PF11_0207 PE=1 SV=2) HSP 1 Score: 45.8 bits (107), Expect = 8.2e-04 Identity = 54/186 (29.03%), Postives = 98/186 (52.69%), Query Frame = 0
BLAST of Lsi06G015800 vs. ExPASy TrEMBL
Match: A0A0A0LS07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004180 PE=4 SV=1) HSP 1 Score: 369.4 bits (947), Expect = 1.2e-98 Identity = 195/220 (88.64%), Postives = 202/220 (91.82%), Query Frame = 0
BLAST of Lsi06G015800 vs. ExPASy TrEMBL
Match: A0A5D3BGY2 (Golgin subfamily A member 6-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001180 PE=4 SV=1) HSP 1 Score: 366.3 bits (939), Expect = 1.0e-97 Identity = 192/220 (87.27%), Postives = 203/220 (92.27%), Query Frame = 0
BLAST of Lsi06G015800 vs. ExPASy TrEMBL
Match: A0A1S3CLU2 (uncharacterized protein LOC103502383 OS=Cucumis melo OX=3656 GN=LOC103502383 PE=4 SV=1) HSP 1 Score: 366.3 bits (939), Expect = 1.0e-97 Identity = 192/220 (87.27%), Postives = 203/220 (92.27%), Query Frame = 0
BLAST of Lsi06G015800 vs. ExPASy TrEMBL
Match: A0A5A7UW79 (Golgin subfamily A member 6-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001160 PE=4 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 8.6e-97 Identity = 191/220 (86.82%), Postives = 202/220 (91.82%), Query Frame = 0
BLAST of Lsi06G015800 vs. ExPASy TrEMBL
Match: A0A6J1EVL0 (uncharacterized protein LOC111438196 OS=Cucurbita moschata OX=3662 GN=LOC111438196 PE=4 SV=1) HSP 1 Score: 354.8 bits (909), Expect = 3.1e-94 Identity = 187/220 (85.00%), Postives = 199/220 (90.45%), Query Frame = 0
BLAST of Lsi06G015800 vs. NCBI nr
Match: XP_038879675.1 (uncharacterized protein LOC120071454 [Benincasa hispida]) HSP 1 Score: 370.5 bits (950), Expect = 1.1e-98 Identity = 196/220 (89.09%), Postives = 204/220 (92.73%), Query Frame = 0
BLAST of Lsi06G015800 vs. NCBI nr
Match: XP_004138095.1 (uncharacterized protein LOC101204691 [Cucumis sativus] >KGN63552.1 hypothetical protein Csa_013066 [Cucumis sativus]) HSP 1 Score: 369.4 bits (947), Expect = 2.5e-98 Identity = 195/220 (88.64%), Postives = 202/220 (91.82%), Query Frame = 0
BLAST of Lsi06G015800 vs. NCBI nr
Match: XP_008464528.1 (PREDICTED: uncharacterized protein LOC103502383 [Cucumis melo] >TYJ98513.1 golgin subfamily A member 6-like protein 2 [Cucumis melo var. makuwa]) HSP 1 Score: 366.3 bits (939), Expect = 2.1e-97 Identity = 192/220 (87.27%), Postives = 203/220 (92.27%), Query Frame = 0
BLAST of Lsi06G015800 vs. NCBI nr
Match: KAA0057829.1 (golgin subfamily A member 6-like protein 2 [Cucumis melo var. makuwa]) HSP 1 Score: 363.2 bits (931), Expect = 1.8e-96 Identity = 191/220 (86.82%), Postives = 202/220 (91.82%), Query Frame = 0
BLAST of Lsi06G015800 vs. NCBI nr
Match: XP_023530768.1 (uncharacterized protein LOC111793218 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 355.9 bits (912), Expect = 2.8e-94 Identity = 188/220 (85.45%), Postives = 199/220 (90.45%), Query Frame = 0
BLAST of Lsi06G015800 vs. TAIR 10
Match: AT3G23930.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13540.1); Has 10639 Blast hits to 7432 proteins in 646 species: Archae - 82; Bacteria - 826; Metazoa - 5047; Fungi - 759; Plants - 314; Viruses - 86; Other Eukaryotes - 3525 (source: NCBI BLink). ) HSP 1 Score: 107.5 bits (267), Expect = 1.6e-23 Identity = 89/215 (41.40%), Postives = 125/215 (58.14%), Query Frame = 0
BLAST of Lsi06G015800 vs. TAIR 10
Match: AT4G13540.1 (unknown protein; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23930.1); Has 4658 Blast hits to 3455 proteins in 431 species: Archae - 39; Bacteria - 387; Metazoa - 1842; Fungi - 436; Plants - 133; Viruses - 38; Other Eukaryotes - 1783 (source: NCBI BLink). ) HSP 1 Score: 104.4 bits (259), Expect = 1.4e-22 Identity = 79/199 (39.70%), Postives = 116/199 (58.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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