Lsi06G015710 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G015710
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionKinetochore protein SPC25
Locationchr06: 26142282 .. 26142506 (+)
RNA-Seq ExpressionLsi06G015710
SyntenyLsi06G015710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACAAGGCGGAAGATTCTGTTCGTGCGAGGCTGGAGAAACTTCGAATTGCTCGTGTAAATGAAATTCCAGTTCAGCAGCAAAAGATGGAGTCCTTCGCGGATTCATTCTGCAAATCTGTGGAATCGATCAATGTAAGGTCCCGAGCAAATGCCCTAAGTCAAGGTGAGCCATCTATTTTCCTCAATTTACTCGAGAATGAATTCTGTGCGAAACTGTAA

mRNA sequence

ATGGAGAACAAGGCGGAAGATTCTGTTCGTGCGAGGCTGGAGAAACTTCGAATTGCTCGTGTAAATGAAATTCCAGTTCAGCAGCAAAAGATGGAGTCCTTCGCGGATTCATTCTGCAAATCTGTGGAATCGATCAATGTAAGGTCCCGAGCAAATGCCCTAAGTCAAGGTGAGCCATCTATTTTCCTCAATTTACTCGAGAATGAATTCTGTGCGAAACTGTAA

Coding sequence (CDS)

ATGGAGAACAAGGCGGAAGATTCTGTTCGTGCGAGGCTGGAGAAACTTCGAATTGCTCGTGTAAATGAAATTCCAGTTCAGCAGCAAAAGATGGAGTCCTTCGCGGATTCATTCTGCAAATCTGTGGAATCGATCAATGTAAGGTCCCGAGCAAATGCCCTAAGTCAAGGTGAGCCATCTATTTTCCTCAATTTACTCGAGAATGAATTCTGTGCGAAACTGTAA

Protein sequence

MENKAEDSVRARLEKLRIARVNEIPVQQQKMESFADSFCKSVESINVRSRANALSQGEPSIFLNLLENEFCAKL
Homology
[Close]
BLAST of Lsi06G015710 vs. ExPASy TrEMBL
Match: A0A5A7UUK0 (Kinetochore protein SPC25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001230 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.5e-20
Identity = 60/74 (81.08%), Postives = 61/74 (82.43%), Query Frame = 0 

Query: 1  MENKAEDSVRARLEKLRIARVNEIPVQQQKMESFADSFCKSVESINVRSRANALSQGEPS 60
          ME KA DSVRARLEKLRI R NEIPVQQQKMESFADSFCKSVESI+VRSRANALSQGE S
Sbjct: 1  MEIKATDSVRARLEKLRIVRENEIPVQQQKMESFADSFCKSVESISVRSRANALSQGELS 60

Query: 61 IFLNLLENEFCAKL 75
          IF  L   E   KL
Sbjct: 61 IFFILFGKEMGVKL 74

[Close]
BLAST of Lsi06G015710 vs. ExPASy TrEMBL
Match: A0A5D3BFE9 (Kinetochore protein SPC25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001250 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.5e-20
Identity = 60/74 (81.08%), Postives = 61/74 (82.43%), Query Frame = 0 

Query: 1  MENKAEDSVRARLEKLRIARVNEIPVQQQKMESFADSFCKSVESINVRSRANALSQGEPS 60
          ME KA DSVRARLEKLRI R NEIPVQQQKMESFADSFCKSVESI+VRSRANALSQGE S
Sbjct: 1  MEIKATDSVRARLEKLRIVRENEIPVQQQKMESFADSFCKSVESISVRSRANALSQGELS 60

Query: 61 IFLNLLENEFCAKL 75
          IF  L   E   KL
Sbjct: 61 IFFILFGKEMGVKL 74

[Close]
BLAST of Lsi06G015710 vs. ExPASy TrEMBL
Match: A0A1S3CM71 (Kinetochore protein SPC25 OS=Cucumis melo OX=3656 GN=LOC103502389 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.6e-17
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0 

Query: 1  MENKAEDSVRARLEKLRIARVNEIPVQQQKMESFADSFCKSVESINVRSRANALSQGE 59
          ME KA DSVRARLEKLRI R NEIPVQQQKMESFADSFCKSVESI+VRSRANALSQG+
Sbjct: 1  MEIKATDSVRARLEKLRIVRENEIPVQQQKMESFADSFCKSVESISVRSRANALSQGK 58

[Close]
BLAST of Lsi06G015710 vs. ExPASy TrEMBL
Match: A0A0A0LU84 (Kinetochore protein SPC25 OS=Cucumis sativus OX=3659 GN=Csa_1G004230 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.4e-17
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0 

Query: 1  MENKAEDSVRARLEKLRIARVNEIPVQQQKMESFADSFCKSVESINVRSRANALSQGE 59
          MENKA DSVRARLEKLRI R NEIPVQQQKMESFADSF KSVESI+VRSRANALSQG+
Sbjct: 1  MENKANDSVRARLEKLRILRENEIPVQQQKMESFADSFYKSVESISVRSRANALSQGK 58

[Close]
BLAST of Lsi06G015710 vs. ExPASy TrEMBL
Match: A0A6J1BYG5 (Kinetochore protein SPC25 OS=Momordica charantia OX=3673 GN=LOC111006883 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 0 

Query: 1  MENKAEDSVRARLEKLRIARVNEIPVQQQKMESFADSFCKSVESINVRSRANALSQGE 59
          MENK EDS+R ++E LR+ R  EIPVQQQKMESFADSF KS+ESI VRSR NALSQG+
Sbjct: 1  MENKVEDSIRVKMESLRMVREKEIPVQQQKMESFADSFRKSLESITVRSRENALSQGK 58

[Close]
BLAST of Lsi06G015710 vs. NCBI nr
Match: KAA0057836.1 (putative kinetochore protein SPC25 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 5.2e-20
Identity = 60/74 (81.08%), Postives = 61/74 (82.43%), Query Frame = 0 

Query: 1  MENKAEDSVRARLEKLRIARVNEIPVQQQKMESFADSFCKSVESINVRSRANALSQGEPS 60
          ME KA DSVRARLEKLRI R NEIPVQQQKMESFADSFCKSVESI+VRSRANALSQGE S
Sbjct: 1  MEIKATDSVRARLEKLRIVRENEIPVQQQKMESFADSFCKSVESISVRSRANALSQGELS 60

Query: 61 IFLNLLENEFCAKL 75
          IF  L   E   KL
Sbjct: 61 IFFILFGKEMGVKL 74

[Close]
BLAST of Lsi06G015710 vs. NCBI nr
Match: TYJ98520.1 (putative kinetochore protein SPC25 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 5.2e-20
Identity = 60/74 (81.08%), Postives = 61/74 (82.43%), Query Frame = 0 

Query: 1  MENKAEDSVRARLEKLRIARVNEIPVQQQKMESFADSFCKSVESINVRSRANALSQGEPS 60
          ME KA DSVRARLEKLRI R NEIPVQQQKMESFADSFCKSVESI+VRSRANALSQGE S
Sbjct: 1  MEIKATDSVRARLEKLRIVRENEIPVQQQKMESFADSFCKSVESISVRSRANALSQGELS 60

Query: 61 IFLNLLENEFCAKL 75
          IF  L   E   KL
Sbjct: 61 IFFILFGKEMGVKL 74

[Close]
BLAST of Lsi06G015710 vs. NCBI nr
Match: XP_008464538.1 (PREDICTED: probable kinetochore protein SPC25 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 5.3e-17
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0 

Query: 1  MENKAEDSVRARLEKLRIARVNEIPVQQQKMESFADSFCKSVESINVRSRANALSQGE 59
          ME KA DSVRARLEKLRI R NEIPVQQQKMESFADSFCKSVESI+VRSRANALSQG+
Sbjct: 1  MEIKATDSVRARLEKLRIVRENEIPVQQQKMESFADSFCKSVESISVRSRANALSQGK 58

[Close]
BLAST of Lsi06G015710 vs. NCBI nr
Match: XP_004138099.1 (kinetochore protein SPC25 homolog [Cucumis sativus] >KGN63556.1 hypothetical protein Csa_014306 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 9.1e-17
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0 

Query: 1  MENKAEDSVRARLEKLRIARVNEIPVQQQKMESFADSFCKSVESINVRSRANALSQGE 59
          MENKA DSVRARLEKLRI R NEIPVQQQKMESFADSF KSVESI+VRSRANALSQG+
Sbjct: 1  MENKANDSVRARLEKLRILRENEIPVQQQKMESFADSFYKSVESISVRSRANALSQGK 58

[Close]
BLAST of Lsi06G015710 vs. NCBI nr
Match: XP_038880541.1 (kinetochore protein SPC25 homolog [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-15
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 1  MENKAEDSVRARLEKLRIARVNEIPVQQQKMESFADSFCKSVESINVRSRANALSQGE 59
          MENKA+DSVRARLEKLRI R  EIP QQQKMESF +SF KSVESINVRSRANALSQG+
Sbjct: 1  MENKAKDSVRARLEKLRIVREKEIPFQQQKMESFVNSFYKSVESINVRSRANALSQGK 58

The following BLAST results are available for this feature:
BLAST of Lsi06G015710 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi06G015710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UUK02.5e-2081.08Kinetochore protein SPC25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A5D3BFE92.5e-2081.08Kinetochore protein SPC25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3CM712.6e-1789.66Kinetochore protein SPC25 OS=Cucumis melo OX=3656 GN=LOC103502389 PE=3 SV=1[more]
A0A0A0LU844.4e-1789.66Kinetochore protein SPC25 OS=Cucumis sativus OX=3659 GN=Csa_1G004230 PE=3 SV=1[more]
A0A6J1BYG52.3e-1374.14Kinetochore protein SPC25 OS=Momordica charantia OX=3673 GN=LOC111006883 PE=3 SV... [more]
BLAST of Lsi06G015710 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0057836.15.2e-2081.08putative kinetochore protein SPC25 [Cucumis melo var. makuwa][more]
TYJ98520.15.2e-2081.08putative kinetochore protein SPC25 [Cucumis melo var. makuwa][more]
XP_008464538.15.3e-1789.66PREDICTED: probable kinetochore protein SPC25 [Cucumis melo][more]
XP_004138099.19.1e-1789.66kinetochore protein SPC25 homolog [Cucumis sativus] >KGN63556.1 hypothetical pro... [more]
XP_038880541.12.9e-1584.48kinetochore protein SPC25 homolog [Benincasa hispida][more]
BLAST of Lsi06G015710 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G015710.1Lsi06G015710.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007049 cell cycle
biological_process GO:0051301 cell division
biological_process GO:0007059 chromosome segregation
cellular_component GO:0031262 Ndc80 complex
cellular_component GO:0005634 nucleus