Lsi06G015380 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G015380
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ABC transporter domain-containing protein
Location	chr06: 25739150 .. 25743685 (-)
RNA-Seq Expression	Lsi06G015380
Synteny	Lsi06G015380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGTGAGTACCATAGATTAGGATTGTGTTAGTCAGAGACAAAACAGGTAAAGGAATTAATGACATGTTAGGCTAACAACAAACAGCTAAAGCTAGCAGTTTTTTTATGCTTGATGTCTCTTGGAGTTCATTGCCTTTATGTTGAGTAAAACATCAGATACAGTCCATGGGAAACTAAAGTAGAACATGTCTTCTTTGAAGTAAGAAGGGTGGTAAGTTACATGATACCATGCAGAAGCCATCATCTTGTGTTCGTGTGGAGCGCAGCTATTCTCGAACCATTCTTTCACTTCCTTGCGTAGGTTCTTTACCGAAAGCAAAATCCGATCCTTCATATCACCATACTTACGGTTGTCACGTTGCAGGTAAGATGCTCGACTTCGAAGATCGCCCATTAATATCTCGTCTTCATACTCTGCTCCATAGTAGTTCATCAAAATGCTCATTTTTTCAATGTACATGTCTTTGTAACTTTCAGCTATGTCAAGGAAAGCTTCGAAGCCATCAACTTCAAGATCATGATCATAAATTGCTCTAGCAGCCTCCTCTGACCACACAAGTCTTGACCTTTCTCGCTCAATGGACTTAACAGCAGCCCTGTAGAGTTTACCTAATACATTACTGGATATGTACATTTGTTTATCAAATCTCTCCATGAAATCTGGAAACTCCCTTGGTTTTAAAACTCGAGGCATCTCTGCTGGTGCTCCGGTTTTTGCAAAATCGACTGCCATGGAATGCAGTGCTGCAAGCTCTAAGCATTTCGGGCTTAGGGCTTTTTTCGGTTCACGGTCAGCATGAACTAAATGTGCTGTAGAAATGGCACCTAATGTGTCATTGATCATATAATCAACAAAAAACTTTTGAATTTCCTGCAAATTTCAACGATCCAACGAACCGGGAGGATAAACGTCAATCACATTTTTAAGTTTCAAATGGTATAATTTGAATATTCAATAGTTAAGCATACCTCTAGTGTTACATCGTGATCCATTATACGTGGTCTCCGTCCTGTATAGTCCATAGGTGCTTCAGTTTTGGGAGGAATCAGATTTTCATCCCAACTTATGAAATATAAATCTCCATCAAGATCACCGCCTGAACATTCATTCGTATGTGGCCTGTAAAAAAACTCGAGTATTGATTAAAATTCCAGCCTTGGCTAATGCTTTAGCTTTAGGTCTCTACTGGCTTCTAAAATATCAAAACTATTTGAAAAACATCCTGATCCTAATAAGTAGGACATATATTTAGGGTTCGTTTGAATTCACTTTCTTTTTTTAAAAAAATTTACTTTAAAAGTTAATCAAAACCAACCTTAAACCAACCTTAAACTTTAAAGAAGGATTAAACATTTCAAACACTTGCACCAAGTCGGTCATTCATTTAGAAAAGCAACTATTAACTACGAGAAATAAATATGCATATGTGCACATGACCTAAAGGATTGGACACGACAACTTTTTCTTTAGAGCAACAAGGGTGGGGCATGGGGACTTGAACCTCTGATAAAGTAGGAATAGATGTCAATTACTGTTCGGTTATACTCGTGTTGGTGTCCTAGACAACAACTTAAGAGCTAAAATTCCTAACAAGAAATGGCATTAAGACGAGTCATTATCAAAGAAAAGGAGTTAGCAAGTTATACTTATCAACAGCCCGCATATCATACTTATAGAAGACAATATTTATAAAGCTAATCCACAAAATGAACTAGACAACAACTTCAGCTTACAGAAGCATACCTTTCTCCTTTCTGAGGAAATATAAGACAGTCCACCAATCCCTTCTCCTCTAGTTCTACATGGAAAATAGCTTCAAGAACCCTTACATCTCCTGGATGAAGACATGGATTTTTTGTAACAACTACCTTCCCGAGCAGTATAGATTTCGTCTCGTCTATCTTATGAAAGTATTTATGATTCCTGTCCTGAAGCTCGGATTTCGTCAAGGTTATGCAGGCATACACTTGGCCATAATTTAAGATACCAGTTTCATCCAAGCAGCCAAGGAGGATCCGTCCCTTTGGAACATATATTCTACATCTACTTCTTAAATCAGAAAACAGGTTCCAATAGTGTGCTTGAAGCATCATTGAGAGGTAAGGTTCAATATTTGGCTCGTAACCGTGGTTTAACATCTGCACCAGAATGTTATTAGAATCAGCCCCATGCAAATTTTCCAAGACGTTCAAAGCAATGACTTTATCAGTCAGCATTCTCCCTAGAAGATGTAGTTGTTCTTGCTGCAATGCCTCAAAGCTTTCATCCTTCACTCCCAAAGTTGACAAAAGAGTAACAATCTCTCGATTTAAATAGCAGGGCATGGAGTCGCAGCACTTGGTAACGTTGAGCATCTTGTTCTTTGATTCAAATTTAAGCATGCTATCACGCAAAGATAGTTTACGAAAGGAATTACGATCAACAGCAATGACACCTTTGTATCCACCATATCGAATTTGAAATGCTGAAGGGATGTGATTCAGTCCACACTTATCTGCTACTTGCCTTGCAAACGAAAGTGAAATCTTTCCAATACCATCCGAGAAGCAATAGTCAATACCGTCAGAATTCACTTCAATATCAGGTATAATCTCAACATCTTGTGAAGGAACAACAAGAGTTTGAGTGGAAGAACTGAACAATTGACCCATCCTAGCCGCACATTTGGAGATACTACGAATCTTTTCAAAGCAGCCCATCCACTGTCTAATTTCTTCTGCTTTCAAGTTGTCACTGGAAGCAAACATCCAAACAGAGTTTGATCGGAGTTGACTAGCTGAGAAGGCCAAGAACTCAAACCTTTTGGCTCCAATAACAATTCCATCTCGAAGAATAGTCATTATTCGATGATAGATTTCAGTTCTATAAGGTTTTGAGAGTATGCCTCGTTGTATACTCGTTGTAACGGCACCTGCAGGAAGCTTACTCCAGTCCTCTTCAACAAAAGTAACCCTCATAAAATCTGAAGCATATGACGCAAAGTTTTTTACAACATAATTTGAAGTTTCAAGCTCAGGTCCCAAACAATAAATTCTTGATGGGGTGACAAGGACTCTATAACAATTCATCACGTTATTCGACAACCTCTTTTGAGATGATGAAGGAAGATTTTTGCAGTTCCTTTTCAGAACATGTAATTGGGTCTTTAGAAACGACACGGGATCATAACAAATGAACTTCAGCTGGTGAAACCTTTGAAGTACATTCAAAGCAGTATCAAAATCTAAAGTGCTAAGGAAGTTAATCAGATCATCACTGGCTGCAGCAAGGCTAATTTTCTGCATATGAACTAAAGAATTGAGCTGATATAGAACCTCATAGGCTAGATTAGAACCTAATCCAGATTTTATTAGAGGAACAATCTCTGAAGTAGAGCCAAATTCCTCACCATCCTCTAAAACAATATCTTTCTGGGTTTCTCTGTAAAATGGGAAACTGGAAAAAATATCTGCAGCCTGCAAATCTTCTTCAACTTCCCAACAAAAGGAAGTTGACTGACCTATTGACCTCACAGTAGAAAACTCTGTTGTCCGAACCCAAAGATAGTCATAATCTTCTCTGCAAAGACGGTAGCGAGTACTGCTGAATCTGGAAGCCATATTTGATCCAGAAATCTTTTTATATATTCTTGGTGCATATTTGAGCTGCAAGAGGAAACAACAATTTGATTCATTACCATAAGATTTCAGGACAATAACTGAGTAGATAGCTAGCAAGTTTATAATAATAAGCTTTCAATCAAAATTTTCTTTCATTCCTCACTTATTTTTCTCCTCCTTCATTCAATAGACAAAACCCCTTTTGATGAAACAATTTTTTTAAAACCAAGCTGAAAAACCTTACTATGTTGATTATAAAAAGTCTTCCATCGAAGCCAAAGAGAAATATGGAACCTCACCGAGGAACAGACCTCACTAAAGTCCCTATCTACCGCTTGAAATACTCTATTGTTACTCTACTTAAAAGATGAAACAATAAAAACAAGAGCACAGAAATCAAATAATCAGCATAGACAATGCCGAAAATTACCTTTAGGAGAAGTGCATTCAATTTCTCATCTCCCAAACAATACCCAGTAGTTTCCAGAATTTCCTCAAACATAACTTCAAGCTTATAACACTCTTGTTCATGCCATATCCAGAATTCGACCCTTCTCCTCTCCGGCATAATCCAAGCTTTCACACCTTCCCAAGACTCCAAAACACTCATTCGATCTTCTTTCAGCATAAAACCCACATGCAAAACCCCATTCTCGGTCCTGTTTCTGGCGTGTACTGGCCTCACAACAATGTCATCGTTGGTCTCGGAGAATCTAAGGTTGTGGGAGTTGAAGATGAGGTTGTTTTGGACAGAGAAGGACTGAGCTTTGGATTTGGCCTCGAGTGTGGTGAACTGAACACGACCAAAGCCGCGCGATTTCCAGTTCTTCCGTTCGGTGAAGATTTCGATGGCGAAGACGGAGTCGGGGCCCAATTTGGAGGTGAGAAAGGTCAAGAGGTCTTGAGCTATGGCGGACTCCGGAACGTTTGA

mRNA sequence

ATGGGTAGTTCTTTACCGAAAGCAAAATCCGATCCTTCATATCACCATACTTACGGTTGTCACGTTGCAGCTCGGATTTCGTCAAGGTTATGCAGGCATACACTTGGCCATAATTTAAGATACCAGTTTCATCCAAGCAGCCAAGGAGGATCCGTCCCTTTGGAACATATATTCTACATCTACTTCTTAAATCAGAAAACAGGTTCCAATAGTGTGCTTGAAGCATCATTGAGAGAATTCGACCCTTCTCCTCTCCGGCATAATCCAAGCTTTCACACCTTCCCAAGACTCCAAAACACTCATTCGATCTTCTTTCAGCATAAAACCCACATGCAAAACCCCATTCTCGGTCCTGTTTCTGGCGTGTACTGGCCTCACAACAATGTCATCGTTGGTCTCGGAGAATCTAAGGTTGTGGGAGTTGAAGATGAGGTTGTTTTGGACAGAGAAGGACTGAGCTTTGGATTTGGCCTCGAGTGTGGTGAACTGAACACGACCAAAGCCGCGCGATTTCCAGTTCTTCCGTTCGGTGAAGATTTCGATGGCGAAGACGGAGTCGGGGCCCAATTTGGAGGTGAGAAAGGTCAAGAGGTCTTGAGCTATGGCGGACTCCGGAACGTTTGA

Coding sequence (CDS)

ATGGGTAGTTCTTTACCGAAAGCAAAATCCGATCCTTCATATCACCATACTTACGGTTGTCACGTTGCAGCTCGGATTTCGTCAAGGTTATGCAGGCATACACTTGGCCATAATTTAAGATACCAGTTTCATCCAAGCAGCCAAGGAGGATCCGTCCCTTTGGAACATATATTCTACATCTACTTCTTAAATCAGAAAACAGGTTCCAATAGTGTGCTTGAAGCATCATTGAGAGAATTCGACCCTTCTCCTCTCCGGCATAATCCAAGCTTTCACACCTTCCCAAGACTCCAAAACACTCATTCGATCTTCTTTCAGCATAAAACCCACATGCAAAACCCCATTCTCGGTCCTGTTTCTGGCGTGTACTGGCCTCACAACAATGTCATCGTTGGTCTCGGAGAATCTAAGGTTGTGGGAGTTGAAGATGAGGTTGTTTTGGACAGAGAAGGACTGAGCTTTGGATTTGGCCTCGAGTGTGGTGAACTGAACACGACCAAAGCCGCGCGATTTCCAGTTCTTCCGTTCGGTGAAGATTTCGATGGCGAAGACGGAGTCGGGGCCCAATTTGGAGGTGAGAAAGGTCAAGAGGTCTTGAGCTATGGCGGACTCCGGAACGTTTGA

Protein sequence

MGSSLPKAKSDPSYHHTYGCHVAARISSRLCRHTLGHNLRYQFHPSSQGGSVPLEHIFYIYFLNQKTGSNSVLEASLREFDPSPLRHNPSFHTFPRLQNTHSIFFQHKTHMQNPILGPVSGVYWPHNNVIVGLGESKVVGVEDEVVLDREGLSFGFGLECGELNTTKAARFPVLPFGEDFDGEDGVGAQFGGEKGQEVLSYGGLRNV

Homology

[Close]

BLAST of Lsi06G015380 vs. ExPASy TrEMBL
Match: A0A2P5W915 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA33084 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 43/116 (37.07%), Postives = 67/116 (57.76%), Query Frame = 0


Query: 79  EFDPSPLRHNPSFHTFPRLQNTHSIFFQHKTHMQNPILGPVSGVYWPHNNVIVGLGESKV 138
           +F    L H P+ HT P LQ+T +I  +HKT M++  + P+ G     ++VI+   E K 
Sbjct: 44  KFQSPSLGHYPTSHTLPALQDTQAIITRHKTRMKDSTIKPMIGPDGSGDDVIISSREFKR 103

Query: 139 VGVEDEVVLDREGLSFGFGLECGELNTTKAARFPVLPFGEDFDGEDGVGAQFGGEK 195
           +G+E EV++  E    G  L   EL++ +  R PV+  G DF+GEDG+ A+ G E+
Sbjct: 104 MGLEKEVIVAGETKGIGHSLGSSELHSAETTRLPVVAVGRDFNGEDGIRAELGLEE 159

[Close]

BLAST of Lsi06G015380 vs. ExPASy TrEMBL
Match: A0A498I9G3 (ABC transporter domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_040947 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-05
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 84  PLRHNPSFHTFPRLQNTHSIFFQHKTHMQNPILGPVSGVYWPHNNVIVGLGE 136
           PL H+P+ H  PRLQ+ H+IF  HKT+MQN  + P   +Y   +NVIVGLG+
Sbjct: 417 PLGHDPTLHALPRLQHIHAIFLHHKTYMQNGAVYPALQIYRLLDNVIVGLGK 468

[Close]

BLAST of Lsi06G015380 vs. NCBI nr
Match: PPR87595.1 (hypothetical protein GOBAR_AA33084 [Gossypium barbadense])

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-12
Identity = 43/116 (37.07%), Postives = 67/116 (57.76%), Query Frame = 0


Query: 79  EFDPSPLRHNPSFHTFPRLQNTHSIFFQHKTHMQNPILGPVSGVYWPHNNVIVGLGESKV 138
           +F    L H P+ HT P LQ+T +I  +HKT M++  + P+ G     ++VI+   E K 
Sbjct: 44  KFQSPSLGHYPTSHTLPALQDTQAIITRHKTRMKDSTIKPMIGPDGSGDDVIISSREFKR 103

Query: 139 VGVEDEVVLDREGLSFGFGLECGELNTTKAARFPVLPFGEDFDGEDGVGAQFGGEK 195
           +G+E EV++  E    G  L   EL++ +  R PV+  G DF+GEDG+ A+ G E+
Sbjct: 104 MGLEKEVIVAGETKGIGHSLGSSELHSAETTRLPVVAVGRDFNGEDGIRAELGLEE 159

[Close]

BLAST of Lsi06G015380 vs. NCBI nr
Match: RXH79800.1 (hypothetical protein DVH24_040947 [Malus domestica])

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-05
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 84  PLRHNPSFHTFPRLQNTHSIFFQHKTHMQNPILGPVSGVYWPHNNVIVGLGE 136
           PL H+P+ H  PRLQ+ H+IF  HKT+MQN  + P   +Y   +NVIVGLG+
Sbjct: 417 PLGHDPTLHALPRLQHIHAIFLHHKTYMQNGAVYPALQIYRLLDNVIVGLGK 468

The following BLAST results are available for this feature:

BLAST of Lsi06G015380 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G015380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5W915	1.1e-12	37.07	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA33084 PE=4 SV...	[more]
A0A498I9G3	2.2e-05	51.92	ABC transporter domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_04...	[more]

BLAST of Lsi06G015380 vs. NCBI nr


Match Name	E-value	Identity	Description
PPR87595.1	2.2e-12	37.07	hypothetical protein GOBAR_AA33084 [Gossypium barbadense]	[more]
RXH79800.1	4.5e-05	51.92	hypothetical protein DVH24_040947 [Malus domestica]	[more]

BLAST of Lsi06G015380 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G015380.1	Lsi06G015380.1	mRNA