Lsi06G015290 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G015290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DUF4228 domain-containing protein
Location	chr06: 25673519 .. 25675810 (-)
RNA-Seq Expression	Lsi06G015290
Synteny	Lsi06G015290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGATGGGACACCACTCATTATACTGTTGCTTAGGGCTTTTTTTGTTTTTTGTTTTCTTAAGCTTGGTTGTTTCATTCTTGGAGCTATGGAGTTGATGAATTTATCTCTAATTGCTTTACTAAGATTTGTTTTTTTTTTACCCTTTTGAAAGAAAATTCTCATTGTCTGTAGTGAAGTAGATGGATTAATGGATTGGATTTGGAGGTACCCACAAGATTTTTCACCTCCAATTTTGGTTTGTTTTCTTGTGGGCTACTTGAAAATGAAAACTACTCCCAGTTGTGTAATCCAAGGAGAACCACTAGAAATAGAAGATTCAAGTCTCTATTTTTCTTTTTGGTGTTGTGGGAAATATTTGACATTTTCTGGAGGAAAATTTTGTCTTCTTTGTGGTCCTGTGGAATCATAACTTTGAGAGCATGACATTGAAAGTGTATCCATCCCCATTTCATTTATTAATATTCATATATTCTTTTTCATTTACACAAAGTGGTGGTCTCAATTTGAATTGATGTGGGGGGGAGGGGTATAAAAAATACCCAAATGAAAAGAGAAATTATTGGGGTTGAAGAGAAAGAGAAGTGATGAGAGAGAATGTATTCATCATGTAATGTATATATCAAGACTTGGAAGCTGTAATTTCACCTTTGGCACCAGATCCTCTGTTCCTCTACCCACCCAATCATAGCTCACCACCTCATAACTTGTTGGACAATCTTGCCCCTCTTTATCACCTGACTGAGTAGCTCTTTTTACCCCCAAAGATCTATTAAACAGATAAGAAATTTTAAGGCTGCTGGTGAATGAGTGTCTCTTAAGTGTCTATAAAAAAAAAGATTGGTCCTCTCTTCACAGCCTCCCCTCTTGCTTGCTCATTATCCTCATCTCCCACAATTTCATTACCATTAGAGAGAGTGACTGAGAGATGGGAAATTGCCAAGCCATTGATGCAGCAACACTTGTGATACAACACCCAAGTGGGAAAGAAGACAAATTGTATTGGCCTGTGACTGCTAGAGAGATCATGAAGATGAATCCTGGTCATTATGTTGCTCTTCTCATCTCCACTACCATGTTTACACCAAATGAAAGTAATAACAAAACTGAAACAAGCAAGGAAACCAACAATAATTCGGTTCGTTTAACTCGAATCAAGCTTCTCCGCCCAGCTGACATGCTTGTTCTTGGTCAAGTTTACAGGCTCATCACTACTCAAGGTCAGTTTTATCTACCTTTCTTCCTCCTGTTTCTGTCTGTTTTGTCATATCCAAATTCCAACTCTTGAAATATCTCTTAAGTTTTTTAGGCTTAACTTGAATTAATGGCTTCATTTTCTTTGTGGGTTTCAGAAGTTATGAAAGGTTTATCAGCAAAGAAACAAGCAAAGGTTAAACAAAGTCAGTTAGAAGCAGCTGATAAGCCAGAGAGGAGGAAAGAACGTACAACCAGAGGGTCAGATGCAGCAGCAGCAGCTGGAAGATCTGTATCTGAAGATCATGTTCAGGTGAATTTTTTTAACAAACATCAAAACAATTCTTAATTTTGAAGGGATGTTTTTAAAACAAATGTTGTCTCTATTTTCAATTGGAGTTAAAAAAAAACAGAATTCTCTCTAAATGAATTGCACAATTTTTTTCTAGGCGACCAAACACGAGAAAAACAACCGACCAAGGACAACGACAACCTCGGCCACAGCCAGATCAAGAACATGGCAACCTTCATTACATAGCATCTCAGAAGCTGGAAGCTAATCATTTATGTTTCCTATTTCCCACATGCTATTGAAAGACAGGGTGGCACAGATTGTCCTAAGGCTCTTTAAGCTTCTCCAAAGAGTTAAAAAAAAAAAAAAAAAGCAAAAAAGTTGAGAGAGGCCAAATGAGCCTTTTAATTCAAGAGGAGGAATTCTTCCAACACATTGCTGATAATGATATTATGGTGGTGGCTGTAAAAGAGTTGTTTAAAACTTTTTTCTTCAATCTTGGGGAAAAAAAGCACCAAAAACTGTGCATAGAGGAAAAGCAGGGTGGGTATATAGTGCAAGCCAGTTGAGATTCTTCAAACATCTTTGTAAATTCAAAGTTTTTTTCCAGTAATGAAATGGGACTTGAGCAAAAAAGAGAGCTCAGTTTTTCTCTTTTTTTTTTACCATTCTGATTCACTGATTTATCTTTTCATAGTTTCATCTGTTTTACCAGAACTGACAAGTGCTTGTGCTTACCTGTTGTATTTGTTTTACTCCTTTGCCTTCACAATAAAATCATTTTATTGAGTTATAATCATTTTCAC

mRNA sequence

CTTTGATGGGACACCACTCATTATACTGTTGCTTAGGGCTTTTTTTGTTTTTTGTTTTCTTAAGCTTGGTTGTTTCATTCTTGGAGCTATGGAGTTGATGAATTTATCTCTAATTGCTTTACTAAGATTTGTTTTTTTTTTACCCTTTTGAAAGAAAATTCTCATTGTCTGTAGTGAAGTAGATGGATTAATGGATTGGATTTGGAGGTACCCACAAGATTTTTCACCTCCAATTTTGGTTTGTTTTCTTGTGGGCTACTTGAAAATGAAAACTACTCCCAGTTGTGTAATCCAAGGAGAACCACTAGAAATAGAAGATTCAAGTCTCTATTTTTCTTTTTGGTGTTGTGGGAAATATTTGACATTTTCTGGAGGAAAATTTTGTCTTCTTTGTGGTCCTGTGGAATCATAACTTTGAGAGCATGACATTGAAAGTGTATCCATCCCCATTTCATTTATTAATATTCATATATTCTTTTTCATTTACACAAAGTGGTGGTCTCAATTTGAATTGATGTGGGGGGGAGGGGTATAAAAAATACCCAAATGAAAAGAGAAATTATTGGGGTTGAAGAGAAAGAGAAGTGATGAGAGAGAATGTATTCATCATGTAATGTATATATCAAGACTTGGAAGCTGTAATTTCACCTTTGGCACCAGATCCTCTGTTCCTCTACCCACCCAATCATAGCTCACCACCTCATAACTTGTTGGACAATCTTGCCCCTCTTTATCACCTGACTGAGTAGCTCTTTTTACCCCCAAAGATCTATTAAACAGATAAGAAATTTTAAGGCTGCTGGTGAATGAGTGTCTCTTAAGTGTCTATAAAAAAAAAGATTGGTCCTCTCTTCACAGCCTCCCCTCTTGCTTGCTCATTATCCTCATCTCCCACAATTTCATTACCATTAGAGAGAGTGACTGAGAGATGGGAAATTGCCAAGCCATTGATGCAGCAACACTTGTGATACAACACCCAAGTGGGAAAGAAGACAAATTGTATTGGCCTGTGACTGCTAGAGAGATCATGAAGATGAATCCTGGTCATTATGTTGCTCTTCTCATCTCCACTACCATGTTTACACCAAATGAAAGTAATAACAAAACTGAAACAAGCAAGGAAACCAACAATAATTCGGTTCGTTTAACTCGAATCAAGCTTCTCCGCCCAGCTGACATGCTTGTTCTTGGTCAAGTTTACAGGCTCATCACTACTCAAGAAGTTATGAAAGGTTTATCAGCAAAGAAACAAGCAAAGGTTAAACAAAGTCAGTTAGAAGCAGCTGATAAGCCAGAGAGGAGGAAAGAACGTACAACCAGAGGGTCAGATGCAGCAGCAGCAGCTGGAAGATCTGTATCTGAAGATCATGTTCAGGCGACCAAACACGAGAAAAACAACCGACCAAGGACAACGACAACCTCGGCCACAGCCAGATCAAGAACATGGCAACCTTCATTACATAGCATCTCAGAAGCTGGAAGCTAATCATTTATGTTTCCTATTTCCCACATGCTATTGAAAGACAGGGTGGCACAGATTGTCCTAAGGCTCTTTAAGCTTCTCCAAAGAGTTAAAAAAAAAAAAAAAAAGCAAAAAAGTTGAGAGAGGCCAAATGAGCCTTTTAATTCAAGAGGAGGAATTCTTCCAACACATTGCTGATAATGATATTATGGTGGTGGCTGTAAAAGAGTTGTTTAAAACTTTTTTCTTCAATCTTGGGGAAAAAAAGCACCAAAAACTGTGCATAGAGGAAAAGCAGGGTGGGTATATAGTGCAAGCCAGTTGAGATTCTTCAAACATCTTTGTAAATTCAAAGTTTTTTTCCAGTAATGAAATGGGACTTGAGCAAAAAAGAGAGCTCAGTTTTTCTCTTTTTTTTTTACCATTCTGATTCACTGATTTATCTTTTCATAGTTTCATCTGTTTTACCAGAACTGACAAGTGCTTGTGCTTACCTGTTGTATTTGTTTTACTCCTTTGCCTTCACAATAAAATCATTTTATTGAGTTATAATCATTTTCAC

Coding sequence (CDS)

ATGGGAAATTGCCAAGCCATTGATGCAGCAACACTTGTGATACAACACCCAAGTGGGAAAGAAGACAAATTGTATTGGCCTGTGACTGCTAGAGAGATCATGAAGATGAATCCTGGTCATTATGTTGCTCTTCTCATCTCCACTACCATGTTTACACCAAATGAAAGTAATAACAAAACTGAAACAAGCAAGGAAACCAACAATAATTCGGTTCGTTTAACTCGAATCAAGCTTCTCCGCCCAGCTGACATGCTTGTTCTTGGTCAAGTTTACAGGCTCATCACTACTCAAGAAGTTATGAAAGGTTTATCAGCAAAGAAACAAGCAAAGGTTAAACAAAGTCAGTTAGAAGCAGCTGATAAGCCAGAGAGGAGGAAAGAACGTACAACCAGAGGGTCAGATGCAGCAGCAGCAGCTGGAAGATCTGTATCTGAAGATCATGTTCAGGCGACCAAACACGAGAAAAACAACCGACCAAGGACAACGACAACCTCGGCCACAGCCAGATCAAGAACATGGCAACCTTCATTACATAGCATCTCAGAAGCTGGAAGCTAA

Protein sequence

MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNKTETSKETNNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAADKPERRKERTTRGSDAAAAAGRSVSEDHVQATKHEKNNRPRTTTTSATARSRTWQPSLHSISEAGS

Homology

[Close]

BLAST of Lsi06G015290 vs. ExPASy TrEMBL
Match: A0A0A0LRI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005650 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.2e-82
Identity = 172/188 (91.49%), Postives = 179/188 (95.21%), Query Frame = 0


Query: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNKT 60
           MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNN  
Sbjct: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN 60

Query: 61  ETSKETNNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120
           +TS ET++NSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD
Sbjct: 61  QTSNETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120

Query: 121 KPERRKERTTRGSD-AAAAAGRSVSEDHVQATKHEKNNRPR--TTTTSATARSRTWQPSL 180
           KP+RRK+RTTR SD AAAAAGRSVSED +QA KHEKNNRPR  T+TTSATARSRTWQPSL
Sbjct: 121 KPDRRKQRTTRSSDAAAAAAGRSVSEDQIQANKHEKNNRPRTSTSTTSATARSRTWQPSL 180

Query: 181 HSISEAGS 186
           HSISEAGS
Sbjct: 181 HSISEAGS 188

[Close]

BLAST of Lsi06G015290 vs. ExPASy TrEMBL
Match: A0A5D3CU41 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25242G00010 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.4e-82
Identity = 171/187 (91.44%), Postives = 177/187 (94.65%), Query Frame = 0


Query: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNKT 60
           MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNN  
Sbjct: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNSN 60

Query: 61  ETSKETNNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120
           +TS ET++NSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD
Sbjct: 61  QTSNETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120

Query: 121 KPERRKERTTRGSDAAAAAGRSVSEDHVQATKHEKNNRPR--TTTTSATARSRTWQPSLH 180
           KP+RRKERTTR SD  AAAGRSVSED +QA KHEKNNRPR  T+TTSATARSRTWQPSLH
Sbjct: 121 KPDRRKERTTRSSD--AAAGRSVSEDQIQANKHEKNNRPRTSTSTTSATARSRTWQPSLH 180

Query: 181 SISEAGS 186
           SISEAGS
Sbjct: 181 SISEAGS 185

[Close]

BLAST of Lsi06G015290 vs. ExPASy TrEMBL
Match: A0A5A7UT51 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001870 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.4e-82
Identity = 171/187 (91.44%), Postives = 177/187 (94.65%), Query Frame = 0


Query: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNKT 60
           MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNN  
Sbjct: 64  MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNSN 123

Query: 61  ETSKETNNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120
           +TS ET++NSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD
Sbjct: 124 QTSNETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 183

Query: 121 KPERRKERTTRGSDAAAAAGRSVSEDHVQATKHEKNNRPR--TTTTSATARSRTWQPSLH 180
           KP+RRKERTTR SD  AAAGRSVSED +QA KHEKNNRPR  T+TTSATARSRTWQPSLH
Sbjct: 184 KPDRRKERTTRSSD--AAAGRSVSEDQIQANKHEKNNRPRTSTSTTSATARSRTWQPSLH 243

Query: 181 SISEAGS 186
           SISEAGS
Sbjct: 244 SISEAGS 248

[Close]

BLAST of Lsi06G015290 vs. ExPASy TrEMBL
Match: A0A1S3BVG8 (uncharacterized protein LOC103493930 OS=Cucumis melo OX=3656 GN=LOC103493930 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.4e-82
Identity = 171/187 (91.44%), Postives = 177/187 (94.65%), Query Frame = 0


Query: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNKT 60
           MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNN  
Sbjct: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNSN 60

Query: 61  ETSKETNNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120
           +TS ET++NSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD
Sbjct: 61  QTSNETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120

Query: 121 KPERRKERTTRGSDAAAAAGRSVSEDHVQATKHEKNNRPR--TTTTSATARSRTWQPSLH 180
           KP+RRKERTTR SD  AAAGRSVSED +QA KHEKNNRPR  T+TTSATARSRTWQPSLH
Sbjct: 121 KPDRRKERTTRSSD--AAAGRSVSEDQIQANKHEKNNRPRTSTSTTSATARSRTWQPSLH 180

Query: 181 SISEAGS 186
           SISEAGS
Sbjct: 181 SISEAGS 185

[Close]

BLAST of Lsi06G015290 vs. ExPASy TrEMBL
Match: A0A6J1JM82 (uncharacterized protein LOC111485662 OS=Cucurbita maxima OX=3661 GN=LOC111485662 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 9.8e-74
Identity = 163/189 (86.24%), Postives = 171/189 (90.48%), Query Frame = 0


Query: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNKT 60
           MGNCQAIDAATLVIQHP GK DKLYWPVTAREIMKMNPGHYVALLIST MFTPNESNN +
Sbjct: 1   MGNCQAIDAATLVIQHPGGKVDKLYWPVTAREIMKMNPGHYVALLISTAMFTPNESNNNS 60

Query: 61  ETSKETNNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120
           ETS    +NSVRLTRIKLLRPADMLVLGQVYRLIT+QEVM+GLSAKKQAKVKQ+QLEAA+
Sbjct: 61  ETS----SNSVRLTRIKLLRPADMLVLGQVYRLITSQEVMRGLSAKKQAKVKQNQLEAAE 120

Query: 121 KPERRKERTTRGSDAAAAAGRSVS-EDHVQATKHEKNNRPRT---TTTSATARSRTWQPS 180
           KPERRKE+  R SD AAAAGRSVS +D VQATKHEKNNRPRT   TTTSATARSRTWQPS
Sbjct: 121 KPERRKEQPPRRSD-AAAAGRSVSDQDPVQATKHEKNNRPRTSTSTTTSATARSRTWQPS 180

Query: 181 LHSISEAGS 186
           LHSISE GS
Sbjct: 181 LHSISEGGS 184

[Close]

BLAST of Lsi06G015290 vs. NCBI nr
Match: XP_004138125.1 (uncharacterized protein LOC101211887 [Cucumis sativus] >KGN63604.1 hypothetical protein Csa_013313 [Cucumis sativus])

HSP 1 Score: 315.8 bits (808), Expect = 2.4e-82
Identity = 172/188 (91.49%), Postives = 179/188 (95.21%), Query Frame = 0


Query: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNKT 60
           MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNN  
Sbjct: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN 60

Query: 61  ETSKETNNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120
           +TS ET++NSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD
Sbjct: 61  QTSNETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120

Query: 121 KPERRKERTTRGSD-AAAAAGRSVSEDHVQATKHEKNNRPR--TTTTSATARSRTWQPSL 180
           KP+RRK+RTTR SD AAAAAGRSVSED +QA KHEKNNRPR  T+TTSATARSRTWQPSL
Sbjct: 121 KPDRRKQRTTRSSDAAAAAAGRSVSEDQIQANKHEKNNRPRTSTSTTSATARSRTWQPSL 180

Query: 181 HSISEAGS 186
           HSISEAGS
Sbjct: 181 HSISEAGS 188

[Close]

BLAST of Lsi06G015290 vs. NCBI nr
Match: XP_008453120.1 (PREDICTED: uncharacterized protein LOC103493930 [Cucumis melo] >TYK14940.1 DUF4228 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.9 bits (803), Expect = 9.1e-82
Identity = 171/187 (91.44%), Postives = 177/187 (94.65%), Query Frame = 0


Query: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNKT 60
           MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNN  
Sbjct: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNSN 60

Query: 61  ETSKETNNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120
           +TS ET++NSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD
Sbjct: 61  QTSNETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120

Query: 121 KPERRKERTTRGSDAAAAAGRSVSEDHVQATKHEKNNRPR--TTTTSATARSRTWQPSLH 180
           KP+RRKERTTR SD  AAAGRSVSED +QA KHEKNNRPR  T+TTSATARSRTWQPSLH
Sbjct: 121 KPDRRKERTTRSSD--AAAGRSVSEDQIQANKHEKNNRPRTSTSTTSATARSRTWQPSLH 180

Query: 181 SISEAGS 186
           SISEAGS
Sbjct: 181 SISEAGS 185

[Close]

BLAST of Lsi06G015290 vs. NCBI nr
Match: KAA0057887.1 (DUF4228 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.9 bits (803), Expect = 9.1e-82
Identity = 171/187 (91.44%), Postives = 177/187 (94.65%), Query Frame = 0


Query: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNKT 60
           MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNN  
Sbjct: 64  MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNSN 123

Query: 61  ETSKETNNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120
           +TS ET++NSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD
Sbjct: 124 QTSNETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 183

Query: 121 KPERRKERTTRGSDAAAAAGRSVSEDHVQATKHEKNNRPR--TTTTSATARSRTWQPSLH 180
           KP+RRKERTTR SD  AAAGRSVSED +QA KHEKNNRPR  T+TTSATARSRTWQPSLH
Sbjct: 184 KPDRRKERTTRSSD--AAAGRSVSEDQIQANKHEKNNRPRTSTSTTSATARSRTWQPSLH 243

Query: 181 SISEAGS 186
           SISEAGS
Sbjct: 244 SISEAGS 248

[Close]

BLAST of Lsi06G015290 vs. NCBI nr
Match: XP_038880684.1 (uncharacterized protein LOC120072302 [Benincasa hispida])

HSP 1 Score: 313.5 bits (802), Expect = 1.2e-81
Identity = 171/188 (90.96%), Postives = 176/188 (93.62%), Query Frame = 0


Query: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNKT 60
           MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESN   
Sbjct: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNK-- 60

Query: 61  ETSKETNNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120
             + ET NNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD
Sbjct: 61  --NNETTNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120

Query: 121 KPERRKERTTRGSDAAAAAGRSVSEDHVQATKHEKNNRPRTTTTSAT---ARSRTWQPSL 180
           KP+RRKERTTR SDAAAAAGRSVSEDH+QATKHEKNNRPRT++TS T   ARSRTWQPSL
Sbjct: 121 KPDRRKERTTRSSDAAAAAGRSVSEDHIQATKHEKNNRPRTSSTSTTSTIARSRTWQPSL 180

Query: 181 HSISEAGS 186
           HSISEAGS
Sbjct: 181 HSISEAGS 184

[Close]

BLAST of Lsi06G015290 vs. NCBI nr
Match: XP_022988413.1 (uncharacterized protein LOC111485662 [Cucurbita maxima])

HSP 1 Score: 286.2 bits (731), Expect = 2.0e-73
Identity = 163/189 (86.24%), Postives = 171/189 (90.48%), Query Frame = 0


Query: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNKT 60
           MGNCQAIDAATLVIQHP GK DKLYWPVTAREIMKMNPGHYVALLIST MFTPNESNN +
Sbjct: 1   MGNCQAIDAATLVIQHPGGKVDKLYWPVTAREIMKMNPGHYVALLISTAMFTPNESNNNS 60

Query: 61  ETSKETNNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120
           ETS    +NSVRLTRIKLLRPADMLVLGQVYRLIT+QEVM+GLSAKKQAKVKQ+QLEAA+
Sbjct: 61  ETS----SNSVRLTRIKLLRPADMLVLGQVYRLITSQEVMRGLSAKKQAKVKQNQLEAAE 120

Query: 121 KPERRKERTTRGSDAAAAAGRSVS-EDHVQATKHEKNNRPRT---TTTSATARSRTWQPS 180
           KPERRKE+  R SD AAAAGRSVS +D VQATKHEKNNRPRT   TTTSATARSRTWQPS
Sbjct: 121 KPERRKEQPPRRSD-AAAAGRSVSDQDPVQATKHEKNNRPRTSTSTTTSATARSRTWQPS 180

Query: 181 LHSISEAGS 186
           LHSISE GS
Sbjct: 181 LHSISEGGS 184

[Close]

BLAST of Lsi06G015290 vs. TAIR 10
Match: AT5G50090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 141.7 bits (356), Expect = 5.8e-34
Identity = 93/185 (50.27%), Postives = 113/185 (61.08%), Query Frame = 0


Query: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNKT 60
           MGNCQA+D A +VIQHP+GKE+KL  PV+A  +MKMNPGH V+LLISTT  +   S    
Sbjct: 1   MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSG--- 60

Query: 61  ETSKETNNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120
                 +   +RLTRIKLLRP D LVLG VYRLITT+EVMKGL AKK +K+K+    + D
Sbjct: 61  ------HGGPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKKESKGSDD 120

Query: 121 KPERRKERTTRGSDAAAAAGRSVSEDHVQATKHEKNNRPRTTTTSATARSRTWQPSLHSI 180
           K E  K   +   D         +ED +Q  K EK           +  SR+WQPSL SI
Sbjct: 121 KLEMVKAINSTKLD---------NEDQLQMKKQEKER---------SRISRSWQPSLQSI 158

Query: 181 SEAGS 186
           SE GS
Sbjct: 181 SEGGS 158

[Close]

BLAST of Lsi06G015290 vs. TAIR 10
Match: AT1G60010.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10530.1); Has 185 Blast hits to 185 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 180; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 136.3 bits (342), Expect = 2.4e-32
Identity = 89/185 (48.11%), Postives = 116/185 (62.70%), Query Frame = 0


Query: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNKT 60
           MGNCQA+DAA LV+QHP GK D+ Y PV+  EIM+M PGHYV+L+I   +   N     T
Sbjct: 1   MGNCQAVDAAALVLQHPDGKIDRYYGPVSVSEIMRMYPGHYVSLII--PLPEKNIPATTT 60

Query: 61  ETSKETNNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120
            T  ++    VR TR+KLLRP + LVLG  YRLIT+QEVMK L AKK AK K+ Q E + 
Sbjct: 61  TTDDKSERKVVRFTRVKLLRPTENLVLGHAYRLITSQEVMKVLRAKKYAKTKKHQSETS- 120

Query: 121 KPERRKERTTRGSDAAAAAGRSVSEDHVQATKHEKNNRPRTTTTSATARSRTWQPSLHSI 180
             E++K  + +  D  +   +++       TK EK       T SA++RS+TW+PSL SI
Sbjct: 121 -KEKKKPSSEKKIDEESDKNQNLE------TKDEKQR--SVLTNSASSRSKTWRPSLQSI 173

Query: 181 SEAGS 186
           SEA S
Sbjct: 181 SEATS 173

[Close]

BLAST of Lsi06G015290 vs. TAIR 10
Match: AT5G50090.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 134.4 bits (337), Expect = 9.2e-32
Identity = 88/185 (47.57%), Postives = 111/185 (60.00%), Query Frame = 0


Query: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNKT 60
           MGNCQA+D A +VIQHP+GKE+KL  PV+A  +MKMNPGH V+LLISTT  +   S    
Sbjct: 1   MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSG--- 60

Query: 61  ETSKETNNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120
                 +   +RLTRIKLLRP D LVLG VYRLITT+EVMKGL AKK +K+K+    + D
Sbjct: 61  ------HGGPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKKESKGSDD 120

Query: 121 KPERRKERTTRGSDAAAAAGRSVSEDHVQATKHEKNNRPRTTTTSATARSRTWQPSLHSI 180
           K E  K                     + +TK +  ++ +      +  SR+WQPSL SI
Sbjct: 121 KLEMVKA--------------------INSTKLDNEDQEK----ERSRISRSWQPSLQSI 152

Query: 181 SEAGS 186
           SE GS
Sbjct: 181 SEGGS 152

[Close]

BLAST of Lsi06G015290 vs. TAIR 10
Match: AT5G62900.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50090.1); Has 157 Blast hits to 157 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 120.2 bits (300), Expect = 1.8e-27
Identity = 82/185 (44.32%), Postives = 106/185 (57.30%), Query Frame = 0


Query: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNKT 60
           MGNCQA +AAT VIQ P GK  + Y  V A E++K +PGH+VALL+S+ +          
Sbjct: 1   MGNCQAAEAATTVIQQPDGKSVRFYCTVNASEVIKSHPGHHVALLLSSAV---------- 60

Query: 61  ETSKETNNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120
                 +  S+R+TRIKLLRP+D L+LG VYRLI+++EVMKG+ AKK  K+K+   E + 
Sbjct: 61  -----PHGGSLRVTRIKLLRPSDNLLLGHVYRLISSEEVMKGIRAKKSGKMKKIHGEFSV 120

Query: 121 KPERRKERTTRGSDAAAAAGRSVSEDHVQATKHEKNNRPRTTTTSATARSRTWQPSLHSI 180
             E     T R          S S+   Q   HEK  R    T  AT + R WQPSL SI
Sbjct: 121 AEEEINPLTLR--------SESASDKDTQRRIHEK-QRGMMNTGGATNKVRAWQPSLQSI 161

Query: 181 SEAGS 186
           SE+ S
Sbjct: 181 SESTS 161

[Close]

BLAST of Lsi06G015290 vs. TAIR 10
Match: AT1G10530.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60010.1); Has 143 Blast hits to 143 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 116.3 bits (290), Expect = 2.6e-26
Identity = 82/188 (43.62%), Postives = 106/188 (56.38%), Query Frame = 0


Query: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNKT 60
           MGNCQA++AA LV+QHP G  D+ Y  V+  E+M M PGHYV+L+I     +  E  N  
Sbjct: 1   MGNCQAVNAAVLVLQHPGGIIDRYYSSVSVTEVMAMYPGHYVSLIIP---LSEEEEKNIP 60

Query: 61  ETSK---ETNNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLE 120
            T K   +    +VR TR++LLRP + LVLG  YRLIT+QEVMK L  KK AK K+ Q+ 
Sbjct: 61  ATEKGDDKKQRKAVRFTRVQLLRPTENLVLGHAYRLITSQEVMKVLREKKSAKTKKHQI- 120

Query: 121 AADKPERRKERTTRGSDAAAAAGRSVSEDHVQATKHEKNNRPRTTTTSATARSRTWQPSL 180
                    E+TT          +  S+  V   K  K  R    +TS   +S+TW+PSL
Sbjct: 121 ---------EKTT--------TAKKFSDKKVPEKKQGKQFRVIRNSTS-LLKSKTWRPSL 166

Query: 181 HSISEAGS 186
            SISEA S
Sbjct: 181 QSISEATS 166

The following BLAST results are available for this feature:

BLAST of Lsi06G015290 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G015290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRI4	1.2e-82	91.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005650 PE=4 SV=1	[more]
A0A5D3CU41	4.4e-82	91.44	DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UT51	4.4e-82	91.44	DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3BVG8	4.4e-82	91.44	uncharacterized protein LOC103493930 OS=Cucumis melo OX=3656 GN=LOC103493930 PE=...	[more]
A0A6J1JM82	9.8e-74	86.24	uncharacterized protein LOC111485662 OS=Cucurbita maxima OX=3661 GN=LOC111485662...	[more]

BLAST of Lsi06G015290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138125.1	2.4e-82	91.49	uncharacterized protein LOC101211887 [Cucumis sativus] >KGN63604.1 hypothetical ...	[more]
XP_008453120.1	9.1e-82	91.44	PREDICTED: uncharacterized protein LOC103493930 [Cucumis melo] >TYK14940.1 DUF42...	[more]
KAA0057887.1	9.1e-82	91.44	DUF4228 domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_038880684.1	1.2e-81	90.96	uncharacterized protein LOC120072302 [Benincasa hispida]	[more]
XP_022988413.1	2.0e-73	86.24	uncharacterized protein LOC111485662 [Cucurbita maxima]	[more]

BLAST of Lsi06G015290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50090.1	5.8e-34	50.27	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT1G60010.1	2.4e-32	48.11	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT5G50090.2	9.2e-32	47.57	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G62900.1	1.8e-27	44.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT1G10530.1	2.6e-26	43.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..182 e-value: 2.4E-30 score: 106.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..185
None	No IPR available	PANTHER	PTHR33413	EXPRESSED PROTEIN	coord: 1..185
None	No IPR available	PANTHER	PTHR33413:SF28	DUF4228 DOMAIN PROTEIN	coord: 1..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G015290.1	Lsi06G015290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane