Lsi06G013760 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G013760
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	cysteine-rich and transmembrane domain-containing protein B-like
Location	chr06: 24350076 .. 24350934 (-)
RNA-Seq Expression	Lsi06G013760
Synteny	Lsi06G013760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGCGTCGCTCCTTCATTTGACTTCGTACATATTATTCCCCCTGAGGCAGTTGGGCAGTATTAAGAATTTATCTTGTTGTTATGCAATTGGAGTTATAGTATTGGTGGTGTCTTGCTTTGATGCAGCAGGTTACCTAATTTTCAAGAGAACTGCCTATTTTCTTTCCTCAAAAATAACTGCTAACATTGTATCCTTCTGTCAGTAGGTGTAGAAATTTGTAGAGGTTTACAAAGAAAAGCAACCACTCCACAATCTATCATATTTTTTTAAATGCAAAAGTAAACAACTTGAATCCTCACCCTGTTTTATACCTTGCCTAATTCAATGAACATTCAACCTCCAAACAATCAAAGTCAAAGAGTTCAAAAACATGAAACAAAATTTTCAGAACCAACCTCAACAAGGTCATCCTTTATTTTCTTCTATCAATAATTGTTCTTTTAGTTGTAGCTACTTTTGCAAGAGATGATGCTAAAATAGAAAGGAAAATCCACTAAAGTAAAGAATTATTCATGTCAGATGATTTGATTTCCATAAAAAGTAATAAGTAACTTTTCAATTTTCATCTCTACTTTTTCTTGTTCTCTATAGTTTCCTTTGAAGGGGAAAACAAAAGGAAAGATCATAAATTATTGTAGGAAAGTTTGTTCTGAATTTATTGTCTGTAGCATAATTTTATAGATACTGGACCAGGTCCTTATCCAGTTGCCCCACCTATGTGTGATCCAATGCAACATGGTCAGTCTCAGCCATACCCTCCAATTGTACCTTCTCAAGGGGAAACCAAGTCTCAAACTGTACCTCCTTCAAGTGAAACCAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTGTAA

mRNA sequence

ATGTTTGCGTCGCTCCTTCATTTGACTTCGTACATATTATTCCCCCTGAGGCAGTTGGGCAGTATTAAGAATTTATCTTGTTGTTATGCAATTGGAGTTATAGTATTGGTGGTGTCTTGCTTTGATGCAGCAGATACTGGACCAGGTCCTTATCCAGTTGCCCCACCTATGTGTGATCCAATGCAACATGGTCAGTCTCAGCCATACCCTCCAATTGTACCTTCTCAAGGGGAAACCAAGTCTCAAACTGTACCTCCTTCAAGTGAAACCAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTGTAA

Coding sequence (CDS)

ATGTTTGCGTCGCTCCTTCATTTGACTTCGTACATATTATTCCCCCTGAGGCAGTTGGGCAGTATTAAGAATTTATCTTGTTGTTATGCAATTGGAGTTATAGTATTGGTGGTGTCTTGCTTTGATGCAGCAGATACTGGACCAGGTCCTTATCCAGTTGCCCCACCTATGTGTGATCCAATGCAACATGGTCAGTCTCAGCCATACCCTCCAATTGTACCTTCTCAAGGGGAAACCAAGTCTCAAACTGTACCTCCTTCAAGTGAAACCAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTGTAA

Protein sequence

MFASLLHLTSYILFPLRQLGSIKNLSCCYAIGVIVLVVSCFDAADTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL

Homology

[Close]

BLAST of Lsi06G013760 vs. ExPASy TrEMBL
Match: A0A5A7UV38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003310 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.2e-22
Identity = 52/63 (82.54%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 39  SCFDAADTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFC 98
           SC D ADTGPGPY V PP CDPMQHGQ+QPYPPIVP QGETKS+TVPPS +TK RGDGFC
Sbjct: 15  SCCDEADTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFC 74

Query: 99  RGL 102
           RGL
Sbjct: 75  RGL 77

[Close]

BLAST of Lsi06G013760 vs. ExPASy TrEMBL
Match: A0A0A0LPD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.9e-21
Identity = 58/94 (61.70%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 13  LFPLRQLGSIKN-----LSCCYAIGVIVLVVSCFDAADTGPGPYPVAPPMCDPMQHGQSQ 72
           + PL  +G  K       S  Y  G +  V+   +  DTGPGPY VAPPMCDPMQHGQ+Q
Sbjct: 31  IIPLEAVGRYKECILLLCSWIYNFGGLA-VMKQHNFIDTGPGPYQVAPPMCDPMQHGQTQ 90

Query: 73  PYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL 102
           PYPPIVP QGETKS+TVPPS +TK RGDGFCRGL
Sbjct: 91  PYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGL 123

[Close]

BLAST of Lsi06G013760 vs. ExPASy TrEMBL
Match: A0A6J1HZZ2 (cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111468187 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-18
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 45  DTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL 102
           DTGPGPYPVAPPMCDPMQHGQSQPY  I+P QGETKSQ V P  ET S+GDGFCRGL
Sbjct: 11  DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCRGL 67

[Close]

BLAST of Lsi06G013760 vs. NCBI nr
Match: KAA0058026.1 (hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 52/63 (82.54%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 39  SCFDAADTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFC 98
           SC D ADTGPGPY V PP CDPMQHGQ+QPYPPIVP QGETKS+TVPPS +TK RGDGFC
Sbjct: 15  SCCDEADTGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFC 74

Query: 99  RGL 102
           RGL
Sbjct: 75  RGL 77

[Close]

BLAST of Lsi06G013760 vs. NCBI nr
Match: KAE8652444.1 (hypothetical protein Csa_013973 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 58/94 (61.70%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 13  LFPLRQLGSIKN-----LSCCYAIGVIVLVVSCFDAADTGPGPYPVAPPMCDPMQHGQSQ 72
           + PL  +G  K       S  Y  G +  V+   +  DTGPGPY VAPPMCDPMQHGQ+Q
Sbjct: 33  IIPLEAVGRYKECILLLCSWIYNFGGLA-VMKQHNFIDTGPGPYQVAPPMCDPMQHGQTQ 92

Query: 73  PYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL 102
           PYPPIVP QGETKS+TVPPS +TK RGDGFCRGL
Sbjct: 93  PYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGL 125

[Close]

BLAST of Lsi06G013760 vs. NCBI nr
Match: XP_022969088.1 (cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxima])

HSP 1 Score: 101.7 bits (252), Expect = 3.9e-18
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 45  DTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL 102
           DTGPGPYPVAPPMCDPMQHGQSQPY  I+P QGETKSQ V P  ET S+GDGFCRGL
Sbjct: 11  DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCRGL 67

[Close]

BLAST of Lsi06G013760 vs. NCBI nr
Match: KAG7021578.1 (hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 45  DTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL 102
           DTGPGPYPVAPPMCDPMQHGQSQPY  I+P QGETK Q V P  ET S+GDGFCRGL
Sbjct: 11  DTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGL 67

[Close]

BLAST of Lsi06G013760 vs. NCBI nr
Match: KAG6587617.1 (hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 8.6e-10
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 57  MCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL 102
           MCDPMQHGQSQPY  I+P QGETK Q V P  ET S+GDGFCRGL
Sbjct: 1   MCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGL 45

The following BLAST results are available for this feature:

BLAST of Lsi06G013760 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G013760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UV38	6.2e-22	82.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LPD8	6.9e-21	61.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1	[more]
A0A6J1HZZ2	1.9e-18	82.46	cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita ma...	[more]

BLAST of Lsi06G013760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058026.1	1.3e-21	82.54	hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa]	[more]
KAE8652444.1	1.4e-20	61.70	hypothetical protein Csa_013973 [Cucumis sativus]	[more]
XP_022969088.1	3.9e-18	82.46	cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxi...	[more]
KAG7021578.1	1.5e-17	80.70	hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6587617.1	8.6e-10	75.56	hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi06G013760 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G013760.1	Lsi06G013760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane