Lsi06G013460 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G013460
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	40S ribosomal protein s28-like
Location	chr06: 24039246 .. 24040051 (+)
RNA-Seq Expression	Lsi06G013460
Synteny	Lsi06G013460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTCCTCGGTGTCTTGGGTCATAATATTGCAGTAATTAGAATTGTAATTCGCATATCTTCTGAAAAAGATGGTTTCTTCTACACTTCTATTCATAGAATATTCTGGACTGACATCCATAAGCTTTTCTGTTTGCCATTAGTTGACTTTTTCCTAAAACTTGAAATTAGGCTGTTCAAATTGAGAAGTGAAGCTGTATAACTAGTAATTGGTGGCTGGTGGTAGATTGTTTTGGAAATAGCTACTTAGAAAGGGTAATTTATAAAGTAAAAGATTCTTGGATTGTGTAAGATTAAGTTATTGGTGTGTTTATGCAGGAATGGAATCCCAGATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGGCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGATATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTGATGGGGGATTCTTTCAAGGTCCCAGTTCTCCAGTTTGCAGTTGCTGAATGTTATCCTTTTAGTTTTAATCTTACCTACAAATAGAATGGCTGTTATCATTTTACCCTATTTATGTTTGGTTTTAGTGACAACCTTGTCCAAGACATTTTTGGTTCTAAGCATGAATACGTGAACTGGATGAGTTATTTAATTGAGTTTTGAAACGATCAAATTTTCTTATATGGAGTTTCTGTAAAATTTTGTGGTCATTTGCCAACTGCTTAATATTTTTGGTGTTATCACTTTCTTGG

mRNA sequence

ATTTTCCTCGGTGTCTTGGGTCATAATATTGCAGTAATTAGAATTGTAATTCGCATATCTTCTGAAAAAGATGGAATGGAATCCCAGATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGGCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGATATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTGATGGGGGATTCTTTCAAGGTCCCAGTTCTCCAGTTTGCAGTTGCTGAATGTTATCCTTTTAGTTTTAATCTTACCTACAAATAGAATGGCTGTTATCATTTTACCCTATTTATGTTTGGTTTTAGTGACAACCTTGTCCAAGACATTTTTGGTTCTAAGCATGAATACGTGAACTGGATGAGTTATTTAATTGAGTTTTGAAACGATCAAATTTTCTTATATGGAGTTTCTGTAAAATTTTGTGGTCATTTGCCAACTGCTTAATATTTTTGGTGTTATCACTTTCTTGG

Coding sequence (CDS)

ATTTTCCTCGGTGTCTTGGGTCATAATATTGCAGTAATTAGAATTGTAATTCGCATATCTTCTGAAAAAGATGGAATGGAATCCCAGATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGGCAAGTGACTCAAGTGAGAGTTAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGATATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTGA

Protein sequence

IFLGVLGHNIAVIRIVIRISSEKDGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Homology

[Close]

BLAST of Lsi06G013460 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.8e-25
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 26 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 85
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 86 ARRLR 91
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Lsi06G013460 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 26 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 85
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 86 ARRLR 91
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Lsi06G013460 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.5e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 26 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 85
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 86 ARRLR 91
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Lsi06G013460 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 30 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 89
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 90 R 91
          R
Sbjct: 69 R 69

[Close]

BLAST of Lsi06G013460 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 30 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 89
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 90 R 91
          R
Sbjct: 69 R 69

[Close]

BLAST of Lsi06G013460 vs. ExPASy TrEMBL
Match: A0A1R3HEK0 (Ribosomal protein S28e OS=Corchorus olitorius OX=93759 GN=COLO4_29444 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.5e-27
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 18  RISSEKDGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 77
           R+SS +  M+S IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL
Sbjct: 71  RLSSRRPRMDSTIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 130

Query: 78  TLLESEREARRLR 91
           TLLESEREARRLR
Sbjct: 131 TLLESEREARRLR 143

[Close]

BLAST of Lsi06G013460 vs. ExPASy TrEMBL
Match: A0A6J1E226 (40S ribosomal protein S28-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430126 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.5e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 25  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 84
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 41  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 100

Query: 85  EARRLR 91
           EARRLR
Sbjct: 101 EARRLR 106

[Close]

BLAST of Lsi06G013460 vs. ExPASy TrEMBL
Match: A0A6J1E336 (40S ribosomal protein S28-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430126 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.5e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 25  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 84
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 44  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 103

Query: 85  EARRLR 91
           EARRLR
Sbjct: 104 EARRLR 109

[Close]

BLAST of Lsi06G013460 vs. ExPASy TrEMBL
Match: W9RZ99 (Nicotinamide mononucleotide adenylyltransferase 1 OS=Morus notabilis OX=981085 GN=L484_004025 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 72/91 (79.12%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 5   VLGHNIAVIRIV-----IRISSEKDGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQ 64
           +L  N   IRIV      +ISS +  MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQ
Sbjct: 185 ILNENRDNIRIVDELIPNQISSTRVRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQ 244

Query: 65  NRYIMRNVKGPVREGDILTLLESEREARRLR 91
           NR+IMRNVKGPVREGDILTLLESEREARRLR
Sbjct: 245 NRFIMRNVKGPVREGDILTLLESEREARRLR 275

[Close]

BLAST of Lsi06G013460 vs. ExPASy TrEMBL
Match: A0A6J1HTG7 (40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.7e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 26 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 85
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 86 ARRLR 91
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Lsi06G013460 vs. NCBI nr
Match: XP_022922061.1 (40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 25  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 84
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 44  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 103

Query: 85  EARRLR 91
           EARRLR
Sbjct: 104 EARRLR 109

[Close]

BLAST of Lsi06G013460 vs. NCBI nr
Match: KAG7023246.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 25 GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 84
          GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 34 GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 93

Query: 85 EARRLR 91
          EARRLR
Sbjct: 94 EARRLR 99

[Close]

BLAST of Lsi06G013460 vs. NCBI nr
Match: KAG7027430.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 25  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 84
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 52  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 111

Query: 85  EARRLR 91
           EARRLR
Sbjct: 112 EARRLR 117

[Close]

BLAST of Lsi06G013460 vs. NCBI nr
Match: XP_022922062.1 (40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 25  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 84
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 41  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 100

Query: 85  EARRLR 91
           EARRLR
Sbjct: 101 EARRLR 106

[Close]

BLAST of Lsi06G013460 vs. NCBI nr
Match: OMO68734.1 (Ribosomal protein S28e [Corchorus olitorius])

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 18  RISSEKDGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 77
           R+SS +  M+S IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL
Sbjct: 71  RLSSRRPRMDSTIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 130

Query: 78  TLLESEREARRLR 91
           TLLESEREARRLR
Sbjct: 131 TLLESEREARRLR 143

[Close]

BLAST of Lsi06G013460 vs. TAIR 10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 26 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 85
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 86 ARRLR 91
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Lsi06G013460 vs. TAIR 10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 26 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 85
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 86 ARRLR 91
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Lsi06G013460 vs. TAIR 10
Match: AT5G64140.1 (ribosomal protein S28 )

HSP 1 Score: 110.9 bits (276), Expect = 5.3e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 26 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 85
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 86 ARRLR 91
          ARRLR
Sbjct: 61 ARRLR 64

The following BLAST results are available for this feature:

BLAST of Lsi06G013460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46302	8.8e-25	90.77	40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1	[more]
Q9SR73	2.0e-24	92.31	40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1	[more]
P34789	7.5e-24	89.23	40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1	[more]
Q6PBK3	1.5e-19	80.33	40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1	[more]
Q90YP3	1.5e-19	80.33	40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1	[more]

BLAST of Lsi06G013460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1R3HEK0	7.5e-27	90.41	Ribosomal protein S28e OS=Corchorus olitorius OX=93759 GN=COLO4_29444 PE=3 SV=1	[more]
A0A6J1E226	7.5e-27	100.00	40S ribosomal protein S28-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1E336	7.5e-27	100.00	40S ribosomal protein S28-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
W9RZ99	1.3e-26	79.12	Nicotinamide mononucleotide adenylyltransferase 1 OS=Morus notabilis OX=981085 G...	[more]
A0A6J1HTG7	3.7e-26	100.00	40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=...	[more]

BLAST of Lsi06G013460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922061.1	1.5e-26	100.00	40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata]	[more]
KAG7023246.1	1.5e-26	100.00	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7027430.1	1.5e-26	100.00	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022922062.1	1.5e-26	100.00	40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata]	[more]
OMO68734.1	1.5e-26	90.41	Ribosomal protein S28e [Corchorus olitorius]	[more]

BLAST of Lsi06G013460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10090.1	1.4e-25	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	1.4e-25	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	5.3e-25	89.23	ribosomal protein S28	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 23..90 e-value: 1.3E-36 score: 126.2
None	No IPR available	PANTHER	PTHR10769:SF6	40S RIBOSOMAL PROTEIN S28-1	coord: 26..90
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 29..89 e-value: 3.4E-32 score: 110.2
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 26..90
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 19..90 score: 21.55209
IPR000289	Ribosomal protein S28e	CDD	cd04457	S1_S28E	coord: 31..90 e-value: 7.55353E-32 score: 103.869
IPR028626	Ribosomal protein S28e conserved site	PROSITE	PS00961	RIBOSOMAL_S28E	coord: 81..89
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 26..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G013460.1	Lsi06G013460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0006508	proteolysis
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0003735	structural constituent of ribosome