Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGGAAAAGAGAAAGGGGCGGCCGGAGAACAGCGGCGGAATTTATGAAAAGAAGATCAAGAAGGACGAGAAGGCGGCCACGGCGGAGGAGCCGACCGACGAGGAGGTGGAAGAGTTCTATTTGATACTGCGGCGGATGAAGCAAGCGGCGGAATATTTTGGAGTGGAAAAGGGGATGTGGACGAAGAGTTTCAGTGCGGTGGTTGCTGCGGCGGTGGATCGGGAAGAGAAAGAGGAGGAGGAGGAGGAGAAGGGACTGGTCACGGCGGCTCCGGGGCCGGCGGAGGTGAAACGGCTAGGGAAGGGGAAGGAAGTGGTGGAGGAAAATGGGTTGCGGTTGGATTTGAATATAGCGGTGGCTATACAGAGCGACGGCCAGTGA
mRNA sequence
ATGGGAAGGGAAAAGAGAAAGGGGCGGCCGGAGAACAGCGGCGGAATTTATGAAAAGAAGATCAAGAAGGACGAGAAGGCGGCCACGGCGGAGGAGCCGACCGACGAGGAGGTGGAAGAGTTCTATTTGATACTGCGGCGGATGAAGCAAGCGGCGGAATATTTTGGAGTGGAAAAGGGGATGTGGACGAAGAGTTTCAGTGCGGTGGTTGCTGCGGCGGTGGATCGGGAAGAGAAAGAGGAGGAGGAGGAGGAGAAGGGACTGGTCACGGCGGCTCCGGGGCCGGCGGAGGTGAAACGGCTAGGGAAGGGGAAGGAAGTGGTGGAGGAAAATGGGTTGCGGTTGGATTTGAATATAGCGGTGGCTATACAGAGCGACGGCCAGTGA
Coding sequence (CDS)
ATGGGAAGGGAAAAGAGAAAGGGGCGGCCGGAGAACAGCGGCGGAATTTATGAAAAGAAGATCAAGAAGGACGAGAAGGCGGCCACGGCGGAGGAGCCGACCGACGAGGAGGTGGAAGAGTTCTATTTGATACTGCGGCGGATGAAGCAAGCGGCGGAATATTTTGGAGTGGAAAAGGGGATGTGGACGAAGAGTTTCAGTGCGGTGGTTGCTGCGGCGGTGGATCGGGAAGAGAAAGAGGAGGAGGAGGAGGAGAAGGGACTGGTCACGGCGGCTCCGGGGCCGGCGGAGGTGAAACGGCTAGGGAAGGGGAAGGAAGTGGTGGAGGAAAATGGGTTGCGGTTGGATTTGAATATAGCGGTGGCTATACAGAGCGACGGCCAGTGA
Protein sequence
MGREKRKGRPENSGGIYEKKIKKDEKAATAEEPTDEEVEEFYLILRRMKQAAEYFGVEKGMWTKSFSAVVAAAVDREEKEEEEEEKGLVTAAPGPAEVKRLGKGKEVVEENGLRLDLNIAVAIQSDGQ
Homology
BLAST of Lsi06G013360 vs. ExPASy TrEMBL
Match:
A0A5D3DYW7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00500 PE=4 SV=1)
HSP 1 Score: 150.2 bits (378), Expect = 5.8e-33
Identity = 91/131 (69.47%), Postives = 106/131 (80.92%), Query Frame = 0
Query: 1 MGREKRKGRPENSGGIYEKKIKKDEKAAT--AEEPTDEEVEEFYLILRRMKQAAEYFGVE 60
MG+EKRK + E+ I+EKK + D+ A+ AEEPTDEEVEEFY+ILRRMKQ AEYFGVE
Sbjct: 1 MGKEKRKRQLESRVRIHEKKTENDDSTASPAAEEPTDEEVEEFYMILRRMKQMAEYFGVE 60
Query: 61 KGMWTKSFSAVVAAAVDREEKEEEEEEKGLVTAAPGPAEVKRLGKG-KEVVEENGLR-LD 120
+GM TKS SAVVAAA +++EK +EEEKGL TAAP PAE + GK KEVVEENGLR LD
Sbjct: 61 RGMLTKSLSAVVAAAANQQEK--KEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRLLD 120
Query: 121 LNIAVAIQSDG 128
LNIAVA+QSDG
Sbjct: 121 LNIAVAVQSDG 129
BLAST of Lsi06G013360 vs. ExPASy TrEMBL
Match:
A0A5A7USD1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003770 PE=4 SV=1)
HSP 1 Score: 150.2 bits (378), Expect = 5.8e-33
Identity = 91/131 (69.47%), Postives = 106/131 (80.92%), Query Frame = 0
Query: 1 MGREKRKGRPENSGGIYEKKIKKDEKAAT--AEEPTDEEVEEFYLILRRMKQAAEYFGVE 60
MG+EKRK + E+ I+EKK + D+ A+ AEEPTDEEVEEFY+ILRRMKQ AEYFGVE
Sbjct: 1 MGKEKRKRQLESRVPIHEKKTENDDSTASPAAEEPTDEEVEEFYMILRRMKQMAEYFGVE 60
Query: 61 KGMWTKSFSAVVAAAVDREEKEEEEEEKGLVTAAPGPAEVKRLGKG-KEVVEENGLR-LD 120
+GM TKS SAVVAAA +++EK +EEEKGL TAAP PAE + GK KEVVEENGLR LD
Sbjct: 61 RGMLTKSLSAVVAAAANQQEK--KEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRLLD 120
Query: 121 LNIAVAIQSDG 128
LNIAVA+QSDG
Sbjct: 121 LNIAVAVQSDG 129
BLAST of Lsi06G013360 vs. ExPASy TrEMBL
Match:
A0A6M2ET95 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)
HSP 1 Score: 60.5 bits (145), Expect = 6.1e-06
Identity = 54/137 (39.42%), Postives = 72/137 (52.55%), Query Frame = 0
Query: 2 GREKRKGRPENSGGIYEKKIKKDE------KAATAEE----PTDEEVEEFYLILRRMKQA 61
G+EKRK R + S +KK++ E AT EE T+EEVEEF+ ILRRM++A
Sbjct: 20 GKEKRKRRDKESEQGRKKKVRGGEGKEEVVTVATEEEVVTVATEEEVEEFFAILRRMQEA 79
Query: 62 AEYFGVEKGM-WTKSFSAVVAAAVDREEKEEEEEEKGLVTAAPGPAEVKRLGKGKEVVEE 121
A+YFG G W + A V +D EEE + + G EV + V EE
Sbjct: 80 AKYFGKGSGEGWRAAVEAEVVEVIDGGGNNEEEN----MIQSSGAEEVAAV-----VEEE 139
Query: 122 NGLRLDLNIAVAIQSDG 128
NG+ LDLN ++SDG
Sbjct: 140 NGV-LDLNATPVVESDG 146
BLAST of Lsi06G013360 vs. ExPASy TrEMBL
Match:
A0A3N7G0A2 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G054350 PE=4 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 2.3e-05
Identity = 54/137 (39.42%), Postives = 74/137 (54.01%), Query Frame = 0
Query: 2 GREKRKGRPENSGGIYEKKIK----KDE--KAATAEE----PTDEEVEEFYLILRRMKQA 61
G+EKRK + S +KK++ K+E AT EE T+EEVEEF+ ILRRM++A
Sbjct: 19 GKEKRKRGDKESEQGRKKKVRGREGKEEVVTVATEEEVVTVATEEEVEEFFAILRRMQEA 78
Query: 62 AEYFGVEKGM-WTKSFSAVVAAAVDREEKEEEEEEKGLVTAAPGPAEVKRLGKGKEVVEE 121
A+YFG G W + A V +D EEE ++ + G EV + E EE
Sbjct: 79 AKYFGKGSGEGWRAAVEAKVVEVIDGGGNNEEE----IMIQSSGAEEVAAV---VEEEEE 138
Query: 122 NGLRLDLNIAVAIQSDG 128
NG+ LDLN ++SDG
Sbjct: 139 NGV-LDLNATPVVESDG 147
BLAST of Lsi06G013360 vs. ExPASy TrEMBL
Match:
A0A3N7FGA1 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_T172014 PE=4 SV=1)
HSP 1 Score: 55.8 bits (133), Expect = 1.5e-04
Identity = 51/137 (37.23%), Postives = 71/137 (51.82%), Query Frame = 0
Query: 2 GREKRKGRPENSGGIYEKKIK----KDEKAATAEE------PTDEEVEEFYLILRRMKQA 61
G+EKR+ + S +KK++ K+E A E T+EEVEEF+ ILRRM++A
Sbjct: 19 GKEKRRRGDKESEQGRKKKVRGQEGKEEVVTVATEDEVVTVATEEEVEEFFAILRRMQEA 78
Query: 62 AEYFGVEKGM-WTKSFSAVVAAAVDREEKEEEEEEKGLVTAAPGPAEVKRLGKGKEVVEE 121
A+YFG G W + A V +D EEE + + G EV + E EE
Sbjct: 79 AKYFGKGSGEGWRAAVEAKVVEVIDGGGNNEEEN----MIQSSGAEEVAAV---VEEEEE 138
Query: 122 NGLRLDLNIAVAIQSDG 128
NG+ LDLN ++SDG
Sbjct: 139 NGV-LDLNATPVVESDG 147
BLAST of Lsi06G013360 vs. NCBI nr
Match:
KAE8652459.1 (hypothetical protein Csa_013196 [Cucumis sativus])
HSP 1 Score: 162.9 bits (411), Expect = 1.8e-36
Identity = 95/131 (72.52%), Postives = 106/131 (80.92%), Query Frame = 0
Query: 1 MGREKRKGRPENSGGIYEKKIKKDE-KAATAEEPTDEEVEEFYLILRRMKQAAEYFGVEK 60
MG+EKRK + EN I+EKK K D+ AEEPTDEEVEEFY+ILRRMKQ AEYFGVE+
Sbjct: 1 MGKEKRKRQMENRAEIHEKKTKNDDTPTPAAEEPTDEEVEEFYMILRRMKQMAEYFGVER 60
Query: 61 GMWTKSFSAVVAAAVDREEK--EEEEEEKGLVTAAPGPAEVKRLGKGKEVVEENGLRLDL 120
GM KS SAVVAAA D++EK EEEEE+KGL AAP PAEV R GKGKEVVEENGLRLDL
Sbjct: 61 GMLAKSLSAVVAAAADQQEKKEEEEEEKKGLSMAAPSPAEVSRRGKGKEVVEENGLRLDL 120
Query: 121 NIAVAI-QSDG 128
NIA+A+ QSDG
Sbjct: 121 NIALAVQQSDG 131
BLAST of Lsi06G013360 vs. NCBI nr
Match:
KAA0058070.1 (hypothetical protein E6C27_scaffold274G003770 [Cucumis melo var. makuwa])
HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 91/131 (69.47%), Postives = 106/131 (80.92%), Query Frame = 0
Query: 1 MGREKRKGRPENSGGIYEKKIKKDEKAAT--AEEPTDEEVEEFYLILRRMKQAAEYFGVE 60
MG+EKRK + E+ I+EKK + D+ A+ AEEPTDEEVEEFY+ILRRMKQ AEYFGVE
Sbjct: 1 MGKEKRKRQLESRVPIHEKKTENDDSTASPAAEEPTDEEVEEFYMILRRMKQMAEYFGVE 60
Query: 61 KGMWTKSFSAVVAAAVDREEKEEEEEEKGLVTAAPGPAEVKRLGKG-KEVVEENGLR-LD 120
+GM TKS SAVVAAA +++EK +EEEKGL TAAP PAE + GK KEVVEENGLR LD
Sbjct: 61 RGMLTKSLSAVVAAAANQQEK--KEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRLLD 120
Query: 121 LNIAVAIQSDG 128
LNIAVA+QSDG
Sbjct: 121 LNIAVAVQSDG 129
BLAST of Lsi06G013360 vs. NCBI nr
Match:
TYK28420.1 (hypothetical protein E5676_scaffold629G00500 [Cucumis melo var. makuwa])
HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 91/131 (69.47%), Postives = 106/131 (80.92%), Query Frame = 0
Query: 1 MGREKRKGRPENSGGIYEKKIKKDEKAAT--AEEPTDEEVEEFYLILRRMKQAAEYFGVE 60
MG+EKRK + E+ I+EKK + D+ A+ AEEPTDEEVEEFY+ILRRMKQ AEYFGVE
Sbjct: 1 MGKEKRKRQLESRVRIHEKKTENDDSTASPAAEEPTDEEVEEFYMILRRMKQMAEYFGVE 60
Query: 61 KGMWTKSFSAVVAAAVDREEKEEEEEEKGLVTAAPGPAEVKRLGKG-KEVVEENGLR-LD 120
+GM TKS SAVVAAA +++EK +EEEKGL TAAP PAE + GK KEVVEENGLR LD
Sbjct: 61 RGMLTKSLSAVVAAAANQQEK--KEEEKGLSTAAPAPAEANQRGKDQKEVVEENGLRLLD 120
Query: 121 LNIAVAIQSDG 128
LNIAVA+QSDG
Sbjct: 121 LNIAVAVQSDG 129
BLAST of Lsi06G013360 vs. NCBI nr
Match:
KAG6589551.1 (hypothetical protein SDJN03_14974, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 143.3 bits (360), Expect = 1.5e-30
Identity = 86/129 (66.67%), Postives = 95/129 (73.64%), Query Frame = 0
Query: 1 MGREKRKGRPENSGGIYEKKIKKDEKAATAE-EPTDEEVEEFYLILRRMKQAAEYFGVEK 60
M R KRK + EN G EKK K DE A AE EPTDEEVEEFY ILRRMK+AAEYFGVEK
Sbjct: 1 MVRGKRKCQSENDGKFCEKKTKNDETTAAAEKEPTDEEVEEFYSILRRMKRAAEYFGVEK 60
Query: 61 GMWTKSFSAVVAAAVDREEKEEEEEEKGLVTAAPGPAEVKRLGKGKEVVEENGLRLDLNI 120
GM TKS V AAA DREEKEEE++ A A +K+ GKGKEVV ENGLRLDLNI
Sbjct: 61 GMLTKSLRDVAAAAADREEKEEEKKGVKRAEAETDVARMKQGGKGKEVVAENGLRLDLNI 120
Query: 121 AVAIQSDGQ 129
AVA++SDG+
Sbjct: 121 AVAVESDGR 129
BLAST of Lsi06G013360 vs. NCBI nr
Match:
RQP00627.1 (hypothetical protein POPTR_015G054350 [Populus trichocarpa])
HSP 1 Score: 58.5 bits (140), Expect = 4.8e-05
Identity = 54/137 (39.42%), Postives = 74/137 (54.01%), Query Frame = 0
Query: 2 GREKRKGRPENSGGIYEKKIK----KDE--KAATAEE----PTDEEVEEFYLILRRMKQA 61
G+EKRK + S +KK++ K+E AT EE T+EEVEEF+ ILRRM++A
Sbjct: 19 GKEKRKRGDKESEQGRKKKVRGREGKEEVVTVATEEEVVTVATEEEVEEFFAILRRMQEA 78
Query: 62 AEYFGVEKGM-WTKSFSAVVAAAVDREEKEEEEEEKGLVTAAPGPAEVKRLGKGKEVVEE 121
A+YFG G W + A V +D EEE ++ + G EV + E EE
Sbjct: 79 AKYFGKGSGEGWRAAVEAKVVEVIDGGGNNEEE----IMIQSSGAEEVAAV---VEEEEE 138
Query: 122 NGLRLDLNIAVAIQSDG 128
NG+ LDLN ++SDG
Sbjct: 139 NGV-LDLNATPVVESDG 147
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DYW7 | 5.8e-33 | 69.47 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7USD1 | 5.8e-33 | 69.47 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A6M2ET95 | 6.1e-06 | 39.42 | Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1 | [more] |
A0A3N7G0A2 | 2.3e-05 | 39.42 | Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G054350 PE=4 ... | [more] |
A0A3N7FGA1 | 1.5e-04 | 37.23 | Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_T172014 PE=4 SV=... | [more] |
Match Name | E-value | Identity | Description | |
KAE8652459.1 | 1.8e-36 | 72.52 | hypothetical protein Csa_013196 [Cucumis sativus] | [more] |
KAA0058070.1 | 1.2e-32 | 69.47 | hypothetical protein E6C27_scaffold274G003770 [Cucumis melo var. makuwa] | [more] |
TYK28420.1 | 1.2e-32 | 69.47 | hypothetical protein E5676_scaffold629G00500 [Cucumis melo var. makuwa] | [more] |
KAG6589551.1 | 1.5e-30 | 66.67 | hypothetical protein SDJN03_14974, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
RQP00627.1 | 4.8e-05 | 39.42 | hypothetical protein POPTR_015G054350 [Populus trichocarpa] | [more] |
Match Name | E-value | Identity | Description | |