Lsi06G012850 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G012850
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Auxin efflux carrier component
Location	chr06: 23382208 .. 23383577 (+)
RNA-Seq Expression	Lsi06G012850
Synteny	Lsi06G012850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAGCAGCAACAACAACTGCCAAGAAATAGAAGGAGAAAAAGGAGAGAAGACAAAGACAATGCCACCAGCAAGTGTAATGACAAGGCTTATTCTCATAATGGTGTGGAGAAAACTCATAAGAAACCCTAATACTTATTCCAGCTTGATTGGCCTCACTTGGTCTCTTGTTTCATTTAGGTACTTTTTTCCCACTAAAAATATCAAAACGCTGCACCGATGCAACCTATACTTAGCTATTCAACTAAAGTTTGTCACGTGATAGTTTTTTTTTCTTTAAATATTTTTAAGATAGATGCAGTTTAGACTGCATCCAAGTATTTTTTACTCTTTTATGATCAATTGGGTTTTATTTCTTTGTATAGGTGGCATGTTGAAATGCCTGCTATTGTAGCACAATCTATCTCCATCCTCTCCGATGCCGGGCTCGGCATGGCCATGTTCAGTCTCGGTATGGGAAAGTAAAAAATTTTGCTTTGTTTTAAAATATTACGTTCTCATACTAGACGAAGATTCAAATTCAAGTAGAGACTATAGCAACCAAGTATTAAGCTTTGGTTTTGAATGTTGGTGACAGGTTTGTTCATGGCTTTACAACCAAGGATTATAGCATGTGGAAATTCCATAGCAACTTTTGCCATGGCTATTAGATTCCTTACAGGCCCTGCTGTCATGGCAGCTGCTTCAATTGCTGTTGGCCTCAGGGGTGTACTCTTGCATGTTGCCATTGTTCAGGTCCTTTTTTCTCTTTTTAACATATCTCTCATAATATCGAATCGTCGAACTTTGAGTCTAACCCTTTCGTTATAACTTTACTTTTGTAACAGGCAGCTCTTCCTCAAGGGATCGTGCCGTTTGTGTTTGCAAAGGAGTACAGCGTACACCCAGATATTTTGAGCACAGCGTAAGTTAACCCTAACAACAGTTTCGTTTGTTATAATATTACATCACATGTTTATAACAAACGATAAATTATTCGGTGAGACTGTCACAATATGACGGACAGTTTTTTCATCGTATATGATGAATAAGTATTTCAAATTTATATCCCGTAACATCCAACAGTTAACATTTTTTTCTTTTGCAGAGTGATATTTGGGATGTTGATTGCACTGCCAATAACATTGGTGTACTACATTTTGTTGGGACTGTGAAAAGTTTATGTTTAGGTAATATCAAAGATTGCAGAGTTCACTTACAAAAAGCAAATGGAAAAGGGAAGAATCAGAGAGAGCTTTGAACAAGAATTGATAACAACATTATTATTTATTATTAACCAAAATAAAAGAGAATGGGAAAAGATTAAAGAGATTTGAGTTTTTTTTTTTTTTTTTCGACATGAAGTTGTAAAATCATGTTTAATTTGTA

mRNA sequence

ATGAACAGCAGCAACAACAACTGCCAAGAAATAGAAGGAGAAAAAGGAGAGAAGACAAAGACAATGCCACCAGCAAGTGTAATGACAAGGCTTATTCTCATAATGGTGTGGAGAAAACTCATAAGAAACCCTAATACTTATTCCAGCTTGATTGGCCTCACTTGGTGGCATGTTGAAATGCCTGCTATTGTAGCACAATCTATCTCCATCCTCTCCGATGCCGGGCTCGGCATGGCCATGTTCAGTCTCGGTTTGTTCATGGCTTTACAACCAAGGATTATAGCATGTGGAAATTCCATAGCAACTTTTGCCATGGCTATTAGATTCCTTACAGGCCCTGCTGTCATGGCAGCTGCTTCAATTGCTGTTGGCCTCAGGGGTGTACTCTTGCATGTTGCCATTGTTCAGGCAGCTCTTCCTCAAGGGATCGTGCCGTTTGTGTTTGCAAAGGAGTACAGCGTACACCCAGATATTTTGAGCACAGCGTAAGTTAACCCTAACAACAGTTTCGTTTGTTATAATATTACATCACATGTTTATAACAAACGATAAATTATTCGGTGAGACTGTCACAATATGACGGACAGTTTTTTCATCGTATATGATGAATAAGTATTTCAAATTTATATCCCGTAACATCCAACAGTTAACATTTTTTTCTTTTGCAGAGTGATATTTGGGATGTTGATTGCACTGCCAATAACATTGGTGTACTACATTTTGTTGGGACTGTGAAAAGTTTATGTTTAGGTAATATCAAAGATTGCAGAGTTCACTTACAAAAAGCAAATGGAAAAGGGAAGAATCAGAGAGAGCTTTGAACAAGAATTGATAACAACATTATTATTTATTATTAACCAAAATAAAAGAGAATGGGAAAAGATTAAAGAGATTTGAGTTTTTTTTTTTTTTTTTCGACATGAAGTTGTAAAATCATGTTTAATTTGTA

Coding sequence (CDS)

ATGAACAGCAGCAACAACAACTGCCAAGAAATAGAAGGAGAAAAAGGAGAGAAGACAAAGACAATGCCACCAGCAAGTGTAATGACAAGGCTTATTCTCATAATGGTGTGGAGAAAACTCATAAGAAACCCTAATACTTATTCCAGCTTGATTGGCCTCACTTGGTGGCATGTTGAAATGCCTGCTATTGTAGCACAATCTATCTCCATCCTCTCCGATGCCGGGCTCGGCATGGCCATGTTCAGTCTCGGTTTGTTCATGGCTTTACAACCAAGGATTATAGCATGTGGAAATTCCATAGCAACTTTTGCCATGGCTATTAGATTCCTTACAGGCCCTGCTGTCATGGCAGCTGCTTCAATTGCTGTTGGCCTCAGGGGTGTACTCTTGCATGTTGCCATTGTTCAGGCAGCTCTTCCTCAAGGGATCGTGCCGTTTGTGTTTGCAAAGGAGTACAGCGTACACCCAGATATTTTGAGCACAGCGTAA

Protein sequence

MNSSNNNCQEIEGEKGEKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWWHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA

Homology

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BLAST of Lsi06G012850 vs. ExPASy Swiss-Prot
Match: Q67UL3 (Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica OX=39947 GN=PIN1C PE=2 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.6e-64
Identity = 134/163 (82.21%), Postives = 141/163 (86.50%), Query Frame = 0


Query: 11  IEGEKGEKTKT-----MPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW------WHVE 70
           + GE G+   T     MPP SVMTRLILIMVWRKLIRNPNTYSSLIGL W      W+ E
Sbjct: 409 VSGEHGKPGLTPAPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVCFRWNFE 468

Query: 71  MPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPAVMAAA 130
           MPAI+ +SISILSDAGLGMAMFSLGLFMALQPRIIACGN +ATFAMA+RFLTGPAVMAAA
Sbjct: 469 MPAIILKSISILSDAGLGMAMFSLGLFMALQPRIIACGNKVATFAMAVRFLTGPAVMAAA 528

Query: 131 SIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 163
           SIAVGLRG LLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA
Sbjct: 529 SIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 571

[Close]

BLAST of Lsi06G012850 vs. ExPASy Swiss-Prot
Match: Q0IQA5 (Probable auxin efflux carrier component 1d OS=Oryza sativa subsp. japonica OX=39947 GN=PIN1D PE=2 SV=2)

HSP 1 Score: 243.4 bits (620), Expect = 1.7e-63
Identity = 131/166 (78.92%), Postives = 146/166 (87.95%), Query Frame = 0


Query: 4   SNNNCQEIEGEKGE-KTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW------W 63
           SN+  Q    + GE +   MPPASVMTRLILIMVWRKLIRNPNTYSSL+G+ W      W
Sbjct: 372 SNSTAQLRPKDDGEGRAAAMPPASVMTRLILIMVWRKLIRNPNTYSSLLGVIWSLVSYRW 431

Query: 64  HVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPAVM 123
            +EMPAI+A+SISILSDAGLGMAMFSLGLFMALQPRIIACGNS+A++AMA+RFL GPAVM
Sbjct: 432 GIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACGNSLASYAMAVRFLVGPAVM 491

Query: 124 AAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 163
           AAASIAVGLRGVLLH+AIVQAALPQGIVPFVFAKEY+VHP+ILSTA
Sbjct: 492 AAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPNILSTA 537

[Close]

BLAST of Lsi06G012850 vs. ExPASy Swiss-Prot
Match: P0C0X5 (Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica OX=39947 GN=PIN1B PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.9e-63
Identity = 131/166 (78.92%), Postives = 145/166 (87.35%), Query Frame = 0


Query: 4   SNNNCQEIEGEKGE-KTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW------W 63
           SN+  Q    + GE     MPPASVMTRLILIMVWRKLIRNPNTYSSL+G+ W      W
Sbjct: 368 SNSTAQLRPKDDGEGMAAAMPPASVMTRLILIMVWRKLIRNPNTYSSLLGVIWSLVSYRW 427

Query: 64  HVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPAVM 123
            +EMPAI+A+SISILSDAGLGMAMFSLGLFMALQPRIIACGNS+A++AMA+RFL GPAVM
Sbjct: 428 GIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACGNSLASYAMAVRFLVGPAVM 487

Query: 124 AAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 163
           AAASIAVGLRGVLLH+AIVQAALPQGIVPFVFAKEY+VHP+ILSTA
Sbjct: 488 AAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPNILSTA 533

[Close]

BLAST of Lsi06G012850 vs. ExPASy Swiss-Prot
Match: Q9S7Z8 (Auxin efflux carrier component 3 OS=Arabidopsis thaliana OX=3702 GN=PIN3 PE=1 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.3e-62
Identity = 126/155 (81.29%), Postives = 136/155 (87.74%), Query Frame = 0


Query: 13  GEKGEKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW------WHVEMPAIVAQ 72
           G +  + K MPPASVMTRLILIMVWRKLIRNPNTYSSLIGL W      WHV MP I+ Q
Sbjct: 464 GAEASQRKNMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAFRWHVAMPKIIQQ 523

Query: 73  SISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPAVMAAASIAVGLR 132
           SISILSDAGLGMAMFSLGLFMALQP++IACGNS+ATFAMA+RFLTGPAVMA A+IA+GLR
Sbjct: 524 SISILSDAGLGMAMFSLGLFMALQPKLIACGNSVATFAMAVRFLTGPAVMAVAAIAIGLR 583

Query: 133 GVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILST 162
           G LL VAIVQAALPQGIVPFVFAKEY+VHP ILST
Sbjct: 584 GDLLRVAIVQAALPQGIVPFVFAKEYNVHPAILST 618

[Close]

BLAST of Lsi06G012850 vs. ExPASy Swiss-Prot
Match: Q5SMQ9 (Auxin efflux carrier component 1a OS=Oryza sativa subsp. japonica OX=39947 GN=PIN1A PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.6e-61
Identity = 126/147 (85.71%), Postives = 131/147 (89.12%), Query Frame = 0


Query: 22  MPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW------WHVEMPAIVAQSISILSDAG 81
           MPP SVMTRLILIMVWRKLIRNPNTYSSLIGL W      W+ EMPAIV +SISILSDAG
Sbjct: 428 MPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVCFRWNFEMPAIVLKSISILSDAG 487

Query: 82  LGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPAVMAAASIAVGLRGVLLHVAIV 141
           LGMAMFSLGLFMALQP IIACGN +AT+AMA+RFL GPAVMAAAS AVGLRG LLHVAIV
Sbjct: 488 LGMAMFSLGLFMALQPHIIACGNKVATYAMAVRFLAGPAVMAAASFAVGLRGTLLHVAIV 547

Query: 142 QAALPQGIVPFVFAKEYSVHPDILSTA 163
           QAALPQGIVPFVFAKEYSVHP ILSTA
Sbjct: 548 QAALPQGIVPFVFAKEYSVHPSILSTA 574

[Close]

BLAST of Lsi06G012850 vs. ExPASy TrEMBL
Match: A0A0A0LPQ3 (Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=Csa_1G025070 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.4e-77
Identity = 158/168 (94.05%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MNSSNNNCQEIEGEKGEKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW----- 60
           MNSS+NNCQEIEGEKG KTKTMPPASVMTRLILIMVWRKLIRNPNTYSSL+GLTW     
Sbjct: 420 MNSSSNNCQEIEGEKGGKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLVGLTWSLVSF 479

Query: 61  -WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA 120
            WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA
Sbjct: 480 RWHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA 539

Query: 121 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 163
           VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEY+VHPDILSTA
Sbjct: 540 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTA 587

[Close]

BLAST of Lsi06G012850 vs. ExPASy TrEMBL
Match: D7URM3 (Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=CsPIN3 PE=2 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 157/168 (93.45%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MNSSNNNCQEIEGEKGEKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW----- 60
           MNSS+NNCQEIEGEKG KTKTMPPASVMTRLILIMVWRKLIRNPNTYSSL+GLTW     
Sbjct: 421 MNSSSNNCQEIEGEKGGKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLVGLTWSLVSF 480

Query: 61  -WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA 120
            WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA
Sbjct: 481 RWHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA 540

Query: 121 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 163
           VMAAASIAVGLRGVLLHVAIVQAALP+GIVPFVFAKEY+VHPDILSTA
Sbjct: 541 VMAAASIAVGLRGVLLHVAIVQAALPEGIVPFVFAKEYNVHPDILSTA 588

[Close]

BLAST of Lsi06G012850 vs. ExPASy TrEMBL
Match: A0A5A7USK7 (Auxin efflux carrier component OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004490 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 156/168 (92.86%), Postives = 159/168 (94.64%), Query Frame = 0


Query: 1   MNSSNNNCQEIEGEKGEKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW----- 60
           MNSS+NNCQEIEGEKG K KTMPPASVMTRLILIMVWRKLIRNPNTYSSL+GLTW     
Sbjct: 420 MNSSSNNCQEIEGEKGGKIKTMPPASVMTRLILIMVWRKLIRNPNTYSSLVGLTWSLVSF 479

Query: 61  -WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA 120
            WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIA FAMAIRFLTGPA
Sbjct: 480 RWHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFAMAIRFLTGPA 539

Query: 121 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 163
           VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEY+VHPDILSTA
Sbjct: 540 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTA 587

[Close]

BLAST of Lsi06G012850 vs. ExPASy TrEMBL
Match: A0A5D3DY61 (Auxin efflux carrier component OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G001270 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.0e-75
Identity = 156/168 (92.86%), Postives = 159/168 (94.64%), Query Frame = 0


Query: 1   MNSSNNNCQEIEGEKGEKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW----- 60
           MNSS+NN QEIEGEKG KTKTMPPASVMTRLILIMVWRKLIRNPNTYSSL+GLTW     
Sbjct: 420 MNSSSNNRQEIEGEKGGKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLVGLTWSLVSF 479

Query: 61  -WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA 120
            WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIA FAMAIRFLTGPA
Sbjct: 480 RWHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFAMAIRFLTGPA 539

Query: 121 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 163
           VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEY+VHPDILSTA
Sbjct: 540 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTA 587

[Close]

BLAST of Lsi06G012850 vs. ExPASy TrEMBL
Match: A0A1S4DZF4 (Auxin efflux carrier component OS=Cucumis melo OX=3656 GN=LOC103494181 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.0e-75
Identity = 156/168 (92.86%), Postives = 159/168 (94.64%), Query Frame = 0


Query: 1   MNSSNNNCQEIEGEKGEKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW----- 60
           MNSS+NN QEIEGEKG KTKTMPPASVMTRLILIMVWRKLIRNPNTYSSL+GLTW     
Sbjct: 420 MNSSSNNRQEIEGEKGGKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLVGLTWSLVSF 479

Query: 61  -WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA 120
            WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIA FAMAIRFLTGPA
Sbjct: 480 RWHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFAMAIRFLTGPA 539

Query: 121 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 163
           VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEY+VHPDILSTA
Sbjct: 540 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTA 587

[Close]

BLAST of Lsi06G012850 vs. NCBI nr
Match: KGN63875.1 (hypothetical protein Csa_013327 [Cucumis sativus])

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 158/168 (94.05%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MNSSNNNCQEIEGEKGEKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW----- 60
           MNSS+NNCQEIEGEKG KTKTMPPASVMTRLILIMVWRKLIRNPNTYSSL+GLTW     
Sbjct: 420 MNSSSNNCQEIEGEKGGKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLVGLTWSLVSF 479

Query: 61  -WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA 120
            WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA
Sbjct: 480 RWHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA 539

Query: 121 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 163
           VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEY+VHPDILSTA
Sbjct: 540 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTA 587

[Close]

BLAST of Lsi06G012850 vs. NCBI nr
Match: NP_001292667.1 (probable auxin efflux carrier component 1c [Cucumis sativus] >BAJ10463.1 auxin efflux facilitator [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 2.9e-76
Identity = 157/168 (93.45%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MNSSNNNCQEIEGEKGEKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW----- 60
           MNSS+NNCQEIEGEKG KTKTMPPASVMTRLILIMVWRKLIRNPNTYSSL+GLTW     
Sbjct: 421 MNSSSNNCQEIEGEKGGKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLVGLTWSLVSF 480

Query: 61  -WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA 120
            WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA
Sbjct: 481 RWHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA 540

Query: 121 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 163
           VMAAASIAVGLRGVLLHVAIVQAALP+GIVPFVFAKEY+VHPDILSTA
Sbjct: 541 VMAAASIAVGLRGVLLHVAIVQAALPEGIVPFVFAKEYNVHPDILSTA 588

[Close]

BLAST of Lsi06G012850 vs. NCBI nr
Match: XP_038878574.1 (probable auxin efflux carrier component 1c isoform X4 [Benincasa hispida])

HSP 1 Score: 295.0 bits (754), Expect = 3.8e-76
Identity = 158/168 (94.05%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MNSSNNNCQEIEGEKGEKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW----- 60
           MNSS+NNCQEIEGEKG KTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW     
Sbjct: 416 MNSSSNNCQEIEGEKGGKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSF 475

Query: 61  -WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA 120
            WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIA FAMAIRFLTGPA
Sbjct: 476 RWHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFAMAIRFLTGPA 535

Query: 121 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 163
           VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEY+VHPDILSTA
Sbjct: 536 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTA 583

[Close]

BLAST of Lsi06G012850 vs. NCBI nr
Match: XP_038878572.1 (probable auxin efflux carrier component 1c isoform X2 [Benincasa hispida])

HSP 1 Score: 295.0 bits (754), Expect = 3.8e-76
Identity = 158/168 (94.05%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MNSSNNNCQEIEGEKGEKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW----- 60
           MNSS+NNCQEIEGEKG KTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW     
Sbjct: 418 MNSSSNNCQEIEGEKGGKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSF 477

Query: 61  -WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA 120
            WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIA FAMAIRFLTGPA
Sbjct: 478 RWHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFAMAIRFLTGPA 537

Query: 121 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 163
           VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEY+VHPDILSTA
Sbjct: 538 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTA 585

[Close]

BLAST of Lsi06G012850 vs. NCBI nr
Match: XP_038878573.1 (probable auxin efflux carrier component 1c isoform X3 [Benincasa hispida])

HSP 1 Score: 295.0 bits (754), Expect = 3.8e-76
Identity = 158/168 (94.05%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MNSSNNNCQEIEGEKGEKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW----- 60
           MNSS+NNCQEIEGEKG KTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW     
Sbjct: 417 MNSSSNNCQEIEGEKGGKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSF 476

Query: 61  -WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA 120
            WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIA FAMAIRFLTGPA
Sbjct: 477 RWHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFAMAIRFLTGPA 536

Query: 121 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 163
           VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEY+VHPDILSTA
Sbjct: 537 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTA 584

[Close]

BLAST of Lsi06G012850 vs. TAIR 10
Match: AT1G70940.1 (Auxin efflux carrier family protein )

HSP 1 Score: 239.2 bits (609), Expect = 2.3e-63
Identity = 126/155 (81.29%), Postives = 136/155 (87.74%), Query Frame = 0


Query: 13  GEKGEKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW------WHVEMPAIVAQ 72
           G +  + K MPPASVMTRLILIMVWRKLIRNPNTYSSLIGL W      WHV MP I+ Q
Sbjct: 464 GAEASQRKNMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAFRWHVAMPKIIQQ 523

Query: 73  SISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPAVMAAASIAVGLR 132
           SISILSDAGLGMAMFSLGLFMALQP++IACGNS+ATFAMA+RFLTGPAVMA A+IA+GLR
Sbjct: 524 SISILSDAGLGMAMFSLGLFMALQPKLIACGNSVATFAMAVRFLTGPAVMAVAAIAIGLR 583

Query: 133 GVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILST 162
           G LL VAIVQAALPQGIVPFVFAKEY+VHP ILST
Sbjct: 584 GDLLRVAIVQAALPQGIVPFVFAKEYNVHPAILST 618

[Close]

BLAST of Lsi06G012850 vs. TAIR 10
Match: AT5G57090.1 (Auxin efflux carrier family protein )

HSP 1 Score: 235.3 bits (599), Expect = 3.4e-62
Identity = 122/157 (77.71%), Postives = 138/157 (87.90%), Query Frame = 0


Query: 12  EGEKGEKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW------WHVEMPAIVA 71
           +G  G + + MPPASVMTRLILIMVWRKLIRNPNTYSSL GL W      W+++MP I++
Sbjct: 470 DGGPGPRKQQMPPASVMTRLILIMVWRKLIRNPNTYSSLFGLAWSLVSFKWNIKMPTIMS 529

Query: 72  QSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPAVMAAASIAVGL 131
            SISILSDAGLGMAMFSLGLFMALQP+IIACG S+A FAMA+RFLTGPAV+AA SIA+G+
Sbjct: 530 GSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVAGFAMAVRFLTGPAVIAATSIAIGI 589

Query: 132 RGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 163
           RG LLH+AIVQAALPQGIVPFVFAKEY+VHPDILSTA
Sbjct: 590 RGDLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTA 626

[Close]

BLAST of Lsi06G012850 vs. TAIR 10
Match: AT1G73590.1 (Auxin efflux carrier family protein )

HSP 1 Score: 231.1 bits (588), Expect = 6.3e-61
Identity = 121/154 (78.57%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 15  KGEKTKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW------WHVEMPAIVAQSI 74
           K  + K MPP SVMTRLILIMVWRKLIRNPN+YSSL G+TW      W++EMPA++A+SI
Sbjct: 448 KTTQAKVMPPTSVMTRLILIMVWRKLIRNPNSYSSLFGITWSLISFKWNIEMPALIAKSI 507

Query: 75  SILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPAVMAAASIAVGLRGV 134
           SILSDAGLGMAMFSLGLFMAL PRIIACGN  A FA A+RF+ GPAVM  AS AVGLRGV
Sbjct: 508 SILSDAGLGMAMFSLGLFMALNPRIIACGNRRAAFAAAMRFVVGPAVMLVASYAVGLRGV 567

Query: 135 LLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTA 163
           LLHVAI+QAALPQGIVPFVFAKEY+VHPDILSTA
Sbjct: 568 LLHVAIIQAALPQGIVPFVFAKEYNVHPDILSTA 601

[Close]

BLAST of Lsi06G012850 vs. TAIR 10
Match: AT2G01420.1 (Auxin efflux carrier family protein )

HSP 1 Score: 230.7 bits (587), Expect = 8.3e-61
Identity = 126/167 (75.45%), Postives = 139/167 (83.23%), Query Frame = 0


Query: 5   NNNCQEIE---GEKGEKTKT-MPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW----- 64
           +N+  E+E   G+ G    T MPP SVMTRLILIMVWRKLIRNPNTYSSLIGL W     
Sbjct: 424 SNSTAELEAAGGDGGGNNGTHMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAY 483

Query: 65  -WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA 124
            WHV MP I+ QSISILSDAGLGMAMFSLGLFMALQP+IIACGNS+ATFAMA+RF+TGPA
Sbjct: 484 RWHVAMPKILQQSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFAMAVRFITGPA 543

Query: 125 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILST 162
           +MA A IA+GL G LL +AIVQAALPQGIVPFVFAKEY+VHP ILST
Sbjct: 544 IMAVAGIAIGLHGDLLRIAIVQAALPQGIVPFVFAKEYNVHPTILST 590

[Close]

BLAST of Lsi06G012850 vs. TAIR 10
Match: AT2G01420.2 (Auxin efflux carrier family protein )

HSP 1 Score: 230.7 bits (587), Expect = 8.3e-61
Identity = 126/167 (75.45%), Postives = 139/167 (83.23%), Query Frame = 0


Query: 5   NNNCQEIE---GEKGEKTKT-MPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTW----- 64
           +N+  E+E   G+ G    T MPP SVMTRLILIMVWRKLIRNPNTYSSLIGL W     
Sbjct: 428 SNSTAELEAAGGDGGGNNGTHMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAY 487

Query: 65  -WHVEMPAIVAQSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFAMAIRFLTGPA 124
            WHV MP I+ QSISILSDAGLGMAMFSLGLFMALQP+IIACGNS+ATFAMA+RF+TGPA
Sbjct: 488 RWHVAMPKILQQSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFAMAVRFITGPA 547

Query: 125 VMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYSVHPDILST 162
           +MA A IA+GL G LL +AIVQAALPQGIVPFVFAKEY+VHP ILST
Sbjct: 548 IMAVAGIAIGLHGDLLRIAIVQAALPQGIVPFVFAKEYNVHPTILST 594

The following BLAST results are available for this feature:

BLAST of Lsi06G012850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q67UL3	1.6e-64	82.21	Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica OX=39...	[more]
Q0IQA5	1.7e-63	78.92	Probable auxin efflux carrier component 1d OS=Oryza sativa subsp. japonica OX=39...	[more]
P0C0X5	3.9e-63	78.92	Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica OX=39...	[more]
Q9S7Z8	3.3e-62	81.29	Auxin efflux carrier component 3 OS=Arabidopsis thaliana OX=3702 GN=PIN3 PE=1 SV...	[more]
Q5SMQ9	1.6e-61	85.71	Auxin efflux carrier component 1a OS=Oryza sativa subsp. japonica OX=39947 GN=PI...	[more]

BLAST of Lsi06G012850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPQ3	6.4e-77	94.05	Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=Csa_1G025070 PE=3 S...	[more]
D7URM3	1.4e-76	93.45	Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=CsPIN3 PE=2 SV=1	[more]
A0A5A7USK7	1.2e-75	92.86	Auxin efflux carrier component OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DY61	6.0e-75	92.86	Auxin efflux carrier component OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S4DZF4	6.0e-75	92.86	Auxin efflux carrier component OS=Cucumis melo OX=3656 GN=LOC103494181 PE=3 SV=1	[more]

BLAST of Lsi06G012850 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63875.1	1.3e-76	94.05	hypothetical protein Csa_013327 [Cucumis sativus]	[more]
NP_001292667.1	2.9e-76	93.45	probable auxin efflux carrier component 1c [Cucumis sativus] >BAJ10463.1 auxin e...	[more]
XP_038878574.1	3.8e-76	94.05	probable auxin efflux carrier component 1c isoform X4 [Benincasa hispida]	[more]
XP_038878572.1	3.8e-76	94.05	probable auxin efflux carrier component 1c isoform X2 [Benincasa hispida]	[more]
XP_038878573.1	3.8e-76	94.05	probable auxin efflux carrier component 1c isoform X3 [Benincasa hispida]	[more]

BLAST of Lsi06G012850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70940.1	2.3e-63	81.29	Auxin efflux carrier family protein	[more]
AT5G57090.1	3.4e-62	77.71	Auxin efflux carrier family protein	[more]
AT1G73590.1	6.3e-61	78.57	Auxin efflux carrier family protein	[more]
AT2G01420.1	8.3e-61	75.45	Auxin efflux carrier family protein	[more]
AT2G01420.2	8.3e-61	75.45	Auxin efflux carrier family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004776	Membrane transport protein	PFAM	PF03547	Mem_trans	coord: 11..162 e-value: 3.1E-63 score: 213.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR31752	AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED	coord: 12..161
None	No IPR available	PANTHER	PTHR31752:SF60	AUXIN EFFLUX CARRIER COMPONENT 3	coord: 12..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G012850.1	Lsi06G012850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010315	auxin efflux
biological_process	GO:0010252	auxin homeostasis
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0010329	auxin efflux transmembrane transporter activity