Lsi06G012510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G012510
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTetratricopeptide repeat protein 27-like protein
Locationchr06: 23103726 .. 23105219 (-)
RNA-Seq ExpressionLsi06G012510
SyntenyLsi06G012510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGGTTACAACAACTGTGCAAAAGATAAGAGCATTAAAATGTTTAGTTACAAAAACCTAAGGGGAAGAATTATACTAAACGGACAAGTTGCTCTTTGTTTTTTTTTTTTTCTTTTTTGAAGGCTGCAAAGGAGTGAGATATCCCATAATGAGCTGTCCTTGGGGTAGTAAAGTTTTACTCAAACATCCAGATCAATTTCCACTTATTTATATATGATTAGCAGCTCCTCTTCTTGACATACAAGGACGGTACTATAAGGTTGAAGAACTATGGGTGGGTTTCCAATATTATGATCTTATAATTAGTGCTAGGTTCTCAACCACCTCATGACTAATGGTTAACAATGGTAATTTAAATATAAGAGTTTCGAGGGCATGGATTCATGGTGGTTAACTACTTAAGATTCAATATCCTAGGACTTTCTTTTTTTTTGTTAAGATTGTTCGACGTGGGACTAGAGCAGACATATGGGGCATATATGCAAGGTGGCATAAAATTAAAGGAGACTTCACAATGTGCTTCGAGGCCCTTCTAAAGCAAGTTAGATCATATTAGGTATGGACTATAAAGCATGAAATCTACAATGGCTAATGTCTTTTTAAACAGATAGATGTAGCAACTCCTATTTGTCTCGCGAACTAGTAATTGATCTCATGTACCCTTTTCAATTATGGAGCATAAGCGTTGGTTTCAAATTCTTGTTTCTTACGAACGAAAGACATTTTTATCCCCTTCACCCTCTTATTTGTGATTGTTTTTTCCTTGGGGTGTCTTGAATGAGATTATCTTCATAATACACATTTACTCTGACTTGATGCAACAGGTTTTGTGCACTACCAAACAATCTGTACCATTCAAAGTGGTTTGTGGAAGGCTATCGAGTCAAACATCTTCGTCCCATTGTCATACCTCTACAAAGACCATTGTTATGTGTTATATTGAATTCTTAGAAATATACATCTCTTTAGGAATTGAAGAATCTGTTTATATTTAGGAGGATGTGCAAGTTAGTTTATATTTAGGAGGATGTGCAAGTTAGTTCTTCTTTTTTGCTGATGAAATCAACTACTTTCATTGAGAAAAAATGAAAAAATTTAGTTTGTCTTCTTTAATCTATGACGTGTCTCAAGTCCTAGACTACTTTGTTATATCGCATGTTCTAAACTCGCCTCTATAGTGATGCCACCTGAGATCTATTCTACAACTTTAAGAATTCTTTAGAAATAAGGAGCCCTTAAACTTCCTTTCATGCTTCATTGGTGCATTTGTGTCTTATACTACCTCTAAATCTTCATAATGGCTTTAGGTGTCCTTATGTTTGACGTGTTTTCAAAAACATATGTCAAGAAATTACCATTGGGATCAATTAATCATACTCGACCTTTTCAAGGTTCTGATCTTTGGAAAGATAAGGATAAGTTCATGAAGTTTGCACGAGCTTCATTAGAACTTAGCAGGGTCTTCATGCATATACCATCAACTACGAATAG

mRNA sequence

ATGCCGGGCTGCAAAGGAGTGAGATATCCCATAATGAGCTGTCCTTGGGGTAGTAAAATTGTTCGACGTGGGACTAGAGCAGACATATGGGGCATATATGCAAGGTGGCATAAAATTAAAGGAGACTTCACAATGTGCTTCGAGGCCCTTCTAAAGCAAGGTCTTCATGCATATACCATCAACTACGAATAG

Coding sequence (CDS)

ATGCCGGGCTGCAAAGGAGTGAGATATCCCATAATGAGCTGTCCTTGGGGTAGTAAAATTGTTCGACGTGGGACTAGAGCAGACATATGGGGCATATATGCAAGGTGGCATAAAATTAAAGGAGACTTCACAATGTGCTTCGAGGCCCTTCTAAAGCAAGGTCTTCATGCATATACCATCAACTACGAATAG

Protein sequence

MPGCKGVRYPIMSCPWGSKIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQGLHAYTINYE
Homology
[Close]
BLAST of Lsi06G012510 vs. ExPASy TrEMBL
Match: A0A0A0LQK0 (TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G424730 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-09
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 19  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ 54
           +IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Sbjct: 775 QIVRGGTGADIWGIYARWHKIKGDFTMCSEALLKQ 809

[Close]
BLAST of Lsi06G012510 vs. ExPASy TrEMBL
Match: A0A1S3C1C8 (tetratricopeptide repeat protein 27 homolog OS=Cucumis melo OX=3656 GN=LOC103495916 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-09
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 19  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ 54
           +IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Sbjct: 773 QIVRVGTGADIWGIYARWHKIKGDFTMCSEALLKQ 807

[Close]
BLAST of Lsi06G012510 vs. ExPASy TrEMBL
Match: A0A5D3BH33 (Tetratricopeptide repeat protein 27-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00800 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-09
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 19  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ 54
           +IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Sbjct: 773 QIVRVGTGADIWGIYARWHKIKGDFTMCSEALLKQ 807

[Close]
BLAST of Lsi06G012510 vs. ExPASy TrEMBL
Match: A0A5A7ST37 (Tetratricopeptide repeat protein 27-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold465G00260 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-09
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 19  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ 54
           +IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Sbjct: 773 QIVRVGTGADIWGIYARWHKIKGDFTMCSEALLKQ 807

[Close]
BLAST of Lsi06G012510 vs. ExPASy TrEMBL
Match: A0A6J1EWM5 (tetratricopeptide repeat protein 27 homolog OS=Cucurbita moschata OX=3662 GN=LOC111437201 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.9e-09
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 19  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ 54
           +IVR GT ADIWGIYARWHKIKGD+TMC EALLKQ
Sbjct: 775 QIVRGGTGADIWGIYARWHKIKGDYTMCSEALLKQ 809

[Close]
BLAST of Lsi06G012510 vs. NCBI nr
Match: XP_031736747.1 (tetratricopeptide repeat protein 27 homolog isoform X1 [Cucumis sativus] >XP_031736748.1 tetratricopeptide repeat protein 27 homolog isoform X1 [Cucumis sativus] >XP_031736749.1 tetratricopeptide repeat protein 27 homolog isoform X1 [Cucumis sativus] >XP_031736750.1 tetratricopeptide repeat protein 27 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0 

Query: 12  MSCPWGSKIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ 54
           +SC   ++IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Sbjct: 788 LSCKEKNRIVRGGTGADIWGIYARWHKIKGDFTMCSEALLKQ 829

[Close]
BLAST of Lsi06G012510 vs. NCBI nr
Match: XP_038879571.1 (tetratricopeptide repeat protein 27 homolog [Benincasa hispida])

HSP 1 Score: 70.9 bits (172), Expect = 4.6e-09
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 19  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ 54
           +IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Sbjct: 775 QIVRGGTGADIWGIYARWHKIKGDFTMCSEALLKQ 809

[Close]
BLAST of Lsi06G012510 vs. NCBI nr
Match: XP_011650024.1 (tetratricopeptide repeat protein 27 homolog isoform X2 [Cucumis sativus] >KGN63294.1 hypothetical protein Csa_022588 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 4.6e-09
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 19  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ 54
           +IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Sbjct: 775 QIVRGGTGADIWGIYARWHKIKGDFTMCSEALLKQ 809

[Close]
BLAST of Lsi06G012510 vs. NCBI nr
Match: TYJ98349.1 (tetratricopeptide repeat protein 27-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 6.0e-09
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 19  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ 54
           +IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Sbjct: 773 QIVRVGTGADIWGIYARWHKIKGDFTMCSEALLKQ 807

[Close]
BLAST of Lsi06G012510 vs. NCBI nr
Match: XP_008455815.1 (PREDICTED: tetratricopeptide repeat protein 27 homolog [Cucumis melo] >XP_008455817.1 PREDICTED: tetratricopeptide repeat protein 27 homolog [Cucumis melo] >XP_008455818.1 PREDICTED: tetratricopeptide repeat protein 27 homolog [Cucumis melo] >XP_008455819.1 PREDICTED: tetratricopeptide repeat protein 27 homolog [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 6.0e-09
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 19  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ 54
           +IVR GT ADIWGIYARWHKIKGDFTMC EALLKQ
Sbjct: 773 QIVRVGTGADIWGIYARWHKIKGDFTMCSEALLKQ 807

[Close]
BLAST of Lsi06G012510 vs. TAIR 10
Match: AT5G17270.1 (Protein prenylyltransferase superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-08
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 19  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ 54
           +IV+  + A+IWG+YARW +IKGD T+C EALLKQ
Sbjct: 772 QIVKTESTAEIWGLYARWSRIKGDLTVCSEALLKQ 806

[Close]
BLAST of Lsi06G012510 vs. TAIR 10
Match: AT5G37130.1 (Protein prenylyltransferase superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 3.0e-06
Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 0 

Query: 19  KIVRRGTRADIWGIYARWHKIKGDFTMCFEALLKQ 54
           +IV+  +  + WG+YARW +I GD T+C EALLKQ
Sbjct: 751 QIVKTESTFENWGLYARWSRINGDLTICSEALLKQ 785

The following BLAST results are available for this feature:
BLAST of Lsi06G012510 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi06G012510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQK02.2e-0988.57TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G424730 ... [more]
A0A1S3C1C82.9e-0988.57tetratricopeptide repeat protein 27 homolog OS=Cucumis melo OX=3656 GN=LOC103495... [more]
A0A5D3BH332.9e-0988.57Tetratricopeptide repeat protein 27-like protein OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7ST372.9e-0988.57Tetratricopeptide repeat protein 27-like protein OS=Cucumis melo var. makuwa OX=... [more]
A0A6J1EWM54.9e-0985.71tetratricopeptide repeat protein 27 homolog OS=Cucurbita moschata OX=3662 GN=LOC... [more]
BLAST of Lsi06G012510 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031736747.11.9e-1078.57tetratricopeptide repeat protein 27 homolog isoform X1 [Cucumis sativus] >XP_031... [more]
XP_038879571.14.6e-0988.57tetratricopeptide repeat protein 27 homolog [Benincasa hispida][more]
XP_011650024.14.6e-0988.57tetratricopeptide repeat protein 27 homolog isoform X2 [Cucumis sativus] >KGN632... [more]
TYJ98349.16.0e-0988.57tetratricopeptide repeat protein 27-like protein [Cucumis melo var. makuwa][more]
XP_008455815.16.0e-0988.57PREDICTED: tetratricopeptide repeat protein 27 homolog [Cucumis melo] >XP_008455... [more]
BLAST of Lsi06G012510 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G17270.12.4e-0862.86Protein prenylyltransferase superfamily protein [more]
AT5G37130.13.0e-0654.29Protein prenylyltransferase superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G012510.1Lsi06G012510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane