Lsi06G012150 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G012150
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L7-2-like
Location	chr06: 22527058 .. 22527889 (-)
RNA-Seq Expression	Lsi06G012150
Synteny	Lsi06G012150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTAGGAGTTTTGGGCCGTCGATGATCAAGGCCCGTTAACAGAGGAAGCTTACAAAACCCTAAAAGCCAGTGTGTTATACCTCTCTTCTCTGCGCTAAGAGCTCCGCAGCCGCTTCGAATATCTGAAGAAAAGGTATGCTTCTCTAGCTCTTCTTTCGTTCTTCTTCATTCATGCCTTCTATTTCGTAATTTATCAGCATCTGTAGTAATCGTGAGTAGTATTGAAGAATGACTATCCTCCGGTGTGCTGCCTTTTGTTTTGTGTTTGATTTAACTTTTGGGATTTTGATCTTATTTTGGTTTCGTTTAGAGACATGAGTGGGGAAGGAGTCAAGGGAGGCCCGGTGGTTCCGGAGTCCGTGTTGAAGAAGCGGAAGAGAAACGAAGAATGGGCCTTGGCTGAGAAACAAGGTCTAGAGGCTGCGAAGAAGAAGAATGCTGAGAACAGAAAACTGATCTATAACAGGGCTAAACTCTATGCCGAAAAGTACGATGAACAGCAAAAGGATCTGATTCGCTTGAAGCGCGAGGCTAAACTCAAGGGTGGATTTTATGTCGACCCTGAAGCCAAACTTCTGTTCATTATCAGGATCCGAGGGTGAGTCATTGGTTTTGAAAGTTTCTTTTTTTTATTTGTTTGAATCGTTGTTGTAAGCGTTTTTATTATGTTTTTCGGTTTTCAGTATCAATGCTATTGACCCAAAGACCAAGAAGATTCTGCAGCTTCTGCGTTTGAGACAGGTAACACATTACTCCATCGATTTCATCTCGCAGACAATGAATTTATACAATTGTTTCAATTTAATCTCACCAAAGATGAATATTTAA

mRNA sequence

ATGGAAGACATGAGTGGGGAAGGAGTCAAGGGAGGCCCGGTGGTTCCGGAGTCCGTGTTGAAGAAGCGGAAGAGAAACGAAGAATGGGCCTTGGCTGAGAAACAAGGTCTAGAGGCTGCGAAGAAGAAGAATGCTGAGAACAGAAAACTGATCTATAACAGGGCTAAACTCTATGCCGAAAAGTACGATGAACAGCAAAAGGATCTGATTCGCTTGAAGCGCGAGGCTAAACTCAAGGGTGGATTTTATGTCGACCCTGAAGCCAAACTTCTGTTCATTATCAGGATCCGAGGTATCAATGCTATTGACCCAAAGACCAAGAAGATTCTGCAGCTTCTGCGTTTGAGACAGGTAACACATTACTCCATCGATTTCATCTCGCAGACAATGAATTTATACAATTGTTTCAATTTAATCTCACCAAAGATGAATATTTAA

Coding sequence (CDS)

ATGGAAGACATGAGTGGGGAAGGAGTCAAGGGAGGCCCGGTGGTTCCGGAGTCCGTGTTGAAGAAGCGGAAGAGAAACGAAGAATGGGCCTTGGCTGAGAAACAAGGTCTAGAGGCTGCGAAGAAGAAGAATGCTGAGAACAGAAAACTGATCTATAACAGGGCTAAACTCTATGCCGAAAAGTACGATGAACAGCAAAAGGATCTGATTCGCTTGAAGCGCGAGGCTAAACTCAAGGGTGGATTTTATGTCGACCCTGAAGCCAAACTTCTGTTCATTATCAGGATCCGAGGTATCAATGCTATTGACCCAAAGACCAAGAAGATTCTGCAGCTTCTGCGTTTGAGACAGGTAACACATTACTCCATCGATTTCATCTCGCAGACAATGAATTTATACAATTGTTTCAATTTAATCTCACCAAAGATGAATATTTAA

Protein sequence

MEDMSGEGVKGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYDEQQKDLIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQVTHYSIDFISQTMNLYNCFNLISPKMNI

Homology

[Close]

BLAST of Lsi06G012150 vs. ExPASy Swiss-Prot
Match: Q9LHP1 (60S ribosomal protein L7-4 OS=Arabidopsis thaliana OX=3702 GN=RPL7D PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-41
Identity = 88/105 (83.81%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 14  VVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYDEQQKDLIRLK 73
           VVPESVLKKRKR EEWALA+KQ LEAAKK+NAE RKLI+NRAK Y+++Y E++++LI+LK
Sbjct: 9   VVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLK 68

Query: 74  REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQ+
Sbjct: 69  REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 113

[Close]

BLAST of Lsi06G012150 vs. ExPASy Swiss-Prot
Match: P60040 (60S ribosomal protein L7-2 OS=Arabidopsis thaliana OX=3702 GN=RPL7B PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 8.3e-41
Identity = 88/110 (80.00%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 9   VKGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYDEQQKD 68
           V+   VVPESVLKKRKR EEWAL +KQ +EAAKKKNAENRKLI+ RA+ Y+++Y E++K+
Sbjct: 2   VESKVVVPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKE 61

Query: 69  LIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           LI LKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQ+
Sbjct: 62  LISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 111

[Close]

BLAST of Lsi06G012150 vs. ExPASy Swiss-Prot
Match: P60039 (60S ribosomal protein L7-3 OS=Arabidopsis thaliana OX=3702 GN=RPL7C PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 9.5e-37
Identity = 83/105 (79.05%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 14  VVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYDEQQKDLIRLK 73
           VVPESVLKK KR EEWALA+K    AAKKK+ E RKLI+ RA+ YA++Y E+  +LIRLK
Sbjct: 7   VVPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLK 66

Query: 74  REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQ+
Sbjct: 67  REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 111

[Close]

BLAST of Lsi06G012150 vs. ExPASy Swiss-Prot
Match: Q6C603 (60S ribosomal protein L7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=RPL7 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.1e-20
Identity = 52/111 (46.85%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 10  KGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYDEQQKDL 69
           K   +VPE++LKKRK  ++   A++      K  NAE  K+I++RA+ Y ++Y E +++ 
Sbjct: 9   KDDVLVPETLLKKRKNADQIRAAKEAAAAEKKAANAEKDKVIFSRAEKYVKEYREAEREQ 68

Query: 70  IRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQVTH 121
           IRL+REAKL G FYV  E KL+F+IRI+GI+ + PK +K+LQLLRL Q+ +
Sbjct: 69  IRLRREAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINN 119

[Close]

BLAST of Lsi06G012150 vs. ExPASy Swiss-Prot
Match: Q7SBD5 (60S ribosomal protein L7 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 3.1e-19
Identity = 55/112 (49.11%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 10  KGGPVVPESVLKKRKRNEEWALAEKQG-LEAAKKKNAENRKLIYNRAKLYAEKYDEQQKD 69
           K   +VPE++LKKRK ++E A AE+Q  +E  K  N E R +I+ RA+ Y ++Y + +++
Sbjct: 8   KNDVLVPETLLKKRK-SQEKARAERQAEIEKKKAANKEKRAVIFKRAETYVKEYRDVERE 67

Query: 70  LIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQVTH 121
            IRL+R AK  G F++  EAKL+F+IRI+GIN I PK +KILQLLRL Q+ +
Sbjct: 68  KIRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINN 118

[Close]

BLAST of Lsi06G012150 vs. ExPASy TrEMBL
Match: A0A5A7U6V9 (60S ribosomal protein L7-4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001640 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.2e-50
Identity = 107/115 (93.04%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 4   MSGEGVKGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYD 63
           MSG+GVKGGPVVPESVLKKRKRN+EWALAEKQGLEAAKKKNAENRKLIYNRAKLYA++YD
Sbjct: 1   MSGDGVKGGPVVPESVLKKRKRNDEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAKEYD 60

Query: 64  EQQKDLIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           EQQK+LI+LKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKT+KILQLLRLRQ+
Sbjct: 61  EQQKELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTRKILQLLRLRQI 115

[Close]

BLAST of Lsi06G012150 vs. ExPASy TrEMBL
Match: A0A1S3AWN7 (60S ribosomal protein L7-4-like OS=Cucumis melo OX=3656 GN=LOC103483589 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.2e-50
Identity = 107/115 (93.04%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 4   MSGEGVKGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYD 63
           MSG+GVKGGPVVPESVLKKRKRN+EWALAEKQGLEAAKKKNAENRKLIYNRAKLYA++YD
Sbjct: 1   MSGDGVKGGPVVPESVLKKRKRNDEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAKEYD 60

Query: 64  EQQKDLIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           EQQK+LI+LKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKT+KILQLLRLRQ+
Sbjct: 61  EQQKELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTRKILQLLRLRQI 115

[Close]

BLAST of Lsi06G012150 vs. ExPASy TrEMBL
Match: A0A6J1ETP4 (60S ribosomal protein L7-2-like OS=Cucurbita moschata OX=3662 GN=LOC111437634 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.5e-50
Identity = 106/115 (92.17%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 4   MSGEGVKGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYD 63
           MS EGVKGGPVVPESVLKKRKRNEEWALAEK+GLEAAKKKNAENRKLI+NRAKLYA++YD
Sbjct: 1   MSSEGVKGGPVVPESVLKKRKRNEEWALAEKKGLEAAKKKNAENRKLIFNRAKLYAKEYD 60

Query: 64  EQQKDLIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           EQQK+L+RLKREA+LKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQ+
Sbjct: 61  EQQKELVRLKREARLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 115

[Close]

BLAST of Lsi06G012150 vs. ExPASy TrEMBL
Match: A0A6J1IG46 (60S ribosomal protein L7-4-like OS=Cucurbita maxima OX=3661 GN=LOC111473079 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.3e-49
Identity = 105/115 (91.30%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 4   MSGEGVKGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYD 63
           MS EGVKGGPVVPESVLKKRKRNEEWALAEK+GLEAAKKKN ENRKLI+NRAKLYA++YD
Sbjct: 1   MSSEGVKGGPVVPESVLKKRKRNEEWALAEKKGLEAAKKKNVENRKLIFNRAKLYAKEYD 60

Query: 64  EQQKDLIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           EQQK+L+RLKREA+LKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQ+
Sbjct: 61  EQQKELVRLKREARLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 115

[Close]

BLAST of Lsi06G012150 vs. ExPASy TrEMBL
Match: A0A6J1C1C8 (60S ribosomal protein L7-2 OS=Momordica charantia OX=3673 GN=LOC111007372 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.7e-49
Identity = 105/115 (91.30%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 4   MSGEGVKGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYD 63
           MSGEGVKGGPVVPESVLKKRKRNEEWALAEK+ LEA+KKK+AENRKLIYNRAKLYA++YD
Sbjct: 1   MSGEGVKGGPVVPESVLKKRKRNEEWALAEKKDLEASKKKSAENRKLIYNRAKLYAKEYD 60

Query: 64  EQQKDLIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           EQQK+LIRLKREAKLKGGFYVDPEAKLLFI+RIRGINAIDPKT+KILQLLRLRQ+
Sbjct: 61  EQQKELIRLKREAKLKGGFYVDPEAKLLFIVRIRGINAIDPKTRKILQLLRLRQI 115

[Close]

BLAST of Lsi06G012150 vs. NCBI nr
Match: XP_038880671.1 (60S ribosomal protein L7-2 [Benincasa hispida])

HSP 1 Score: 214.2 bits (544), Expect = 7.7e-52
Identity = 111/115 (96.52%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 4   MSGEGVKGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYD 63
           MSGEGVKGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYA++YD
Sbjct: 1   MSGEGVKGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAKEYD 60

Query: 64  EQQKDLIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           EQQK+LIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQ+
Sbjct: 61  EQQKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 115

[Close]

BLAST of Lsi06G012150 vs. NCBI nr
Match: KAA0049249.1 (60S ribosomal protein L7-4-like [Cucumis melo var. makuwa] >TYK17309.1 60S ribosomal protein L7-4-like [Cucumis melo var. makuwa])

HSP 1 Score: 209.1 bits (531), Expect = 2.5e-50
Identity = 107/115 (93.04%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 4   MSGEGVKGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYD 63
           MSG+GVKGGPVVPESVLKKRKRN+EWALAEKQGLEAAKKKNAENRKLIYNRAKLYA++YD
Sbjct: 1   MSGDGVKGGPVVPESVLKKRKRNDEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAKEYD 60

Query: 64  EQQKDLIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           EQQK+LI+LKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKT+KILQLLRLRQ+
Sbjct: 61  EQQKELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTRKILQLLRLRQI 115

[Close]

BLAST of Lsi06G012150 vs. NCBI nr
Match: XP_008438517.1 (PREDICTED: 60S ribosomal protein L7-4-like [Cucumis melo])

HSP 1 Score: 209.1 bits (531), Expect = 2.5e-50
Identity = 107/115 (93.04%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 4   MSGEGVKGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYD 63
           MSG+GVKGGPVVPESVLKKRKRN+EWALAEKQGLEAAKKKNAENRKLIYNRAKLYA++YD
Sbjct: 1   MSGDGVKGGPVVPESVLKKRKRNDEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAKEYD 60

Query: 64  EQQKDLIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           EQQK+LI+LKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKT+KILQLLRLRQ+
Sbjct: 61  EQQKELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTRKILQLLRLRQI 115

[Close]

BLAST of Lsi06G012150 vs. NCBI nr
Match: KAG6587726.1 (60S ribosomal protein L7-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207.6 bits (527), Expect = 7.2e-50
Identity = 106/116 (91.38%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 3   DMSGEGVKGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKY 62
           +MS EGVKGGPVVPESVLKKRKRNEEWALAEK+GLEAAKKKNAENRKLI+NRAKLYA++Y
Sbjct: 431 NMSSEGVKGGPVVPESVLKKRKRNEEWALAEKKGLEAAKKKNAENRKLIFNRAKLYAKEY 490

Query: 63  DEQQKDLIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           DEQQK+L+RLKREA+LKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQ+
Sbjct: 491 DEQQKELVRLKREARLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 546

[Close]

BLAST of Lsi06G012150 vs. NCBI nr
Match: KAG7021690.1 (60S ribosomal protein L7-4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207.2 bits (526), Expect = 9.4e-50
Identity = 106/115 (92.17%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 4   MSGEGVKGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYD 63
           MS EGVKGGPVVPESVLKKRKRNEEWALAEK+GLEAAKKKNAENRKLI+NRAKLYA++YD
Sbjct: 18  MSSEGVKGGPVVPESVLKKRKRNEEWALAEKKGLEAAKKKNAENRKLIFNRAKLYAKEYD 77

Query: 64  EQQKDLIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           EQQK+L+RLKREA+LKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQ+
Sbjct: 78  EQQKELVRLKREARLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 132

[Close]

BLAST of Lsi06G012150 vs. TAIR 10
Match: AT3G13580.3 (Ribosomal protein L30/L7 family protein )

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-42
Identity = 88/105 (83.81%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 14  VVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYDEQQKDLIRLK 73
           VVPESVLKKRKR EEWALA+KQ LEAAKK+NAE RKLI+NRAK Y+++Y E++++LI+LK
Sbjct: 9   VVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLK 68

Query: 74  REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQ+
Sbjct: 69  REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 113

[Close]

BLAST of Lsi06G012150 vs. TAIR 10
Match: AT3G13580.2 (Ribosomal protein L30/L7 family protein )

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-42
Identity = 88/105 (83.81%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 14  VVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYDEQQKDLIRLK 73
           VVPESVLKKRKR EEWALA+KQ LEAAKK+NAE RKLI+NRAK Y+++Y E++++LI+LK
Sbjct: 9   VVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLK 68

Query: 74  REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQ+
Sbjct: 69  REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 113

[Close]

BLAST of Lsi06G012150 vs. TAIR 10
Match: AT3G13580.1 (Ribosomal protein L30/L7 family protein )

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-42
Identity = 88/105 (83.81%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 14  VVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYDEQQKDLIRLK 73
           VVPESVLKKRKR EEWALA+KQ LEAAKK+NAE RKLI+NRAK Y+++Y E++++LI+LK
Sbjct: 9   VVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLK 68

Query: 74  REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQ+
Sbjct: 69  REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 113

[Close]

BLAST of Lsi06G012150 vs. TAIR 10
Match: AT2G01250.1 (Ribosomal protein L30/L7 family protein )

HSP 1 Score: 167.9 bits (424), Expect = 5.9e-42
Identity = 88/110 (80.00%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 9   VKGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYDEQQKD 68
           V+   VVPESVLKKRKR EEWAL +KQ +EAAKKKNAENRKLI+ RA+ Y+++Y E++K+
Sbjct: 2   VESKVVVPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKE 61

Query: 69  LIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           LI LKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQ+
Sbjct: 62  LISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 111

[Close]

BLAST of Lsi06G012150 vs. TAIR 10
Match: AT2G01250.2 (Ribosomal protein L30/L7 family protein )

HSP 1 Score: 167.9 bits (424), Expect = 5.9e-42
Identity = 88/110 (80.00%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 9   VKGGPVVPESVLKKRKRNEEWALAEKQGLEAAKKKNAENRKLIYNRAKLYAEKYDEQQKD 68
           V+   VVPESVLKKRKR EEWAL +KQ +EAAKKKNAENRKLI+ RA+ Y+++Y E++K+
Sbjct: 2   VESKVVVPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKE 61

Query: 69  LIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQV 119
           LI LKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQ+
Sbjct: 62  LISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 111

The following BLAST results are available for this feature:

BLAST of Lsi06G012150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHP1	1.7e-41	83.81	60S ribosomal protein L7-4 OS=Arabidopsis thaliana OX=3702 GN=RPL7D PE=2 SV=1	[more]
P60040	8.3e-41	80.00	60S ribosomal protein L7-2 OS=Arabidopsis thaliana OX=3702 GN=RPL7B PE=1 SV=1	[more]
P60039	9.5e-37	79.05	60S ribosomal protein L7-3 OS=Arabidopsis thaliana OX=3702 GN=RPL7C PE=2 SV=1	[more]
Q6C603	8.1e-20	46.85	60S ribosomal protein L7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284...	[more]
Q7SBD5	3.1e-19	49.11	60S ribosomal protein L7 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / ...	[more]

BLAST of Lsi06G012150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U6V9	1.2e-50	93.04	60S ribosomal protein L7-4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3AWN7	1.2e-50	93.04	60S ribosomal protein L7-4-like OS=Cucumis melo OX=3656 GN=LOC103483589 PE=3 SV=...	[more]
A0A6J1ETP4	4.5e-50	92.17	60S ribosomal protein L7-2-like OS=Cucurbita moschata OX=3662 GN=LOC111437634 PE...	[more]
A0A6J1IG46	1.3e-49	91.30	60S ribosomal protein L7-4-like OS=Cucurbita maxima OX=3661 GN=LOC111473079 PE=3...	[more]
A0A6J1C1C8	1.7e-49	91.30	60S ribosomal protein L7-2 OS=Momordica charantia OX=3673 GN=LOC111007372 PE=3 S...	[more]

BLAST of Lsi06G012150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880671.1	7.7e-52	96.52	60S ribosomal protein L7-2 [Benincasa hispida]	[more]
KAA0049249.1	2.5e-50	93.04	60S ribosomal protein L7-4-like [Cucumis melo var. makuwa] >TYK17309.1 60S ribos...	[more]
XP_008438517.1	2.5e-50	93.04	PREDICTED: 60S ribosomal protein L7-4-like [Cucumis melo]	[more]
KAG6587726.1	7.2e-50	91.38	60S ribosomal protein L7-4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7021690.1	9.4e-50	92.17	60S ribosomal protein L7-4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lsi06G012150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13580.3	1.2e-42	83.81	Ribosomal protein L30/L7 family protein	[more]
AT3G13580.2	1.2e-42	83.81	Ribosomal protein L30/L7 family protein	[more]
AT3G13580.1	1.2e-42	83.81	Ribosomal protein L30/L7 family protein	[more]
AT2G01250.1	5.9e-42	80.00	Ribosomal protein L30/L7 family protein	[more]
AT2G01250.2	5.9e-42	80.00	Ribosomal protein L30/L7 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 55..79
None	No IPR available	PANTHER	PTHR11524:SF47	60S RIBOSOMAL PROTEIN L7-RELATED	coord: 7..119
IPR012988	Ribosomal protein L30, N-terminal	PFAM	PF08079	Ribosomal_L30_N	coord: 15..86 e-value: 1.0E-23 score: 83.3
IPR016082	Ribosomal protein L30, ferredoxin-like fold domain	PFAM	PF00327	Ribosomal_L30	coord: 91..120 e-value: 1.3E-9 score: 37.8
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	GENE3D	3.30.1390.20		coord: 90..141 e-value: 9.9E-7 score: 31.3
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	SUPERFAMILY	55129	Ribosomal protein L30p/L7e	coord: 90..123
IPR039699	Ribosomal protein L7/L30	PANTHER	PTHR11524	60S RIBOSOMAL PROTEIN L7	coord: 7..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G012150.1	Lsi06G012150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome