Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAAGATCACACTCTTCATCTCTCTGAAAAACCCTTTTCATTACTCCAAGCAAATGAATTATTTGTCCACAAAATCCTTTCTAGAAACTCCTCATTTGGCCGCTCTGCCCGTCTCCCTGCCTGTAGCCTGCCCGGTCAAATCCCTTTCAATTGGGAAGCCCAGCCCGGGCTGCCCAAAAACCAACCCTCCCAAATTCTCCCCCCGCTCGACCTCCCGCCGCCGTCACCCTCCGCCGTAGACCTCTCCATAACTCCTCACATTGTCCCCAAGCGACCGCCTGCTAAGATTTGCTTTTGGAAAAAACCGAGGAGAAAATTGAGGCGTGTGGTTAACAAAAACGGTGCGTTTGGATCGTCTCCATCCAGACGACATGTCGATCGTGAGAGTGAGTTTTGTAGGAAATCAAACGACGAGTCGTCATCGTCATCATCGTCTTTGTCTTGTATTTCTTATTCCTTGTCTTCGAATTCTTCTTCTGCTCTTTATAACCGACGGCGCTCTAAACTGGGTAGCCTCGCCAAAAATTTCATTAGGTGGGCCTTCTGA
mRNA sequence
ATGGCAAAAGATCACACTCTTCATCTCTCTGAAAAACCCTTTTCATTACTCCAAGCAAATGAATTATTTGTCCACAAAATCCTTTCTAGAAACTCCTCATTTGGCCGCTCTGCCCGTCTCCCTGCCTGTAGCCTGCCCGGTCAAATCCCTTTCAATTGGGAAGCCCAGCCCGGGCTGCCCAAAAACCAACCCTCCCAAATTCTCCCCCCGCTCGACCTCCCGCCGCCGTCACCCTCCGCCGTAGACCTCTCCATAACTCCTCACATTGTCCCCAAGCGACCGCCTGCTAAGATTTGCTTTTGGAAAAAACCGAGGAGAAAATTGAGGCGTGTGGTTAACAAAAACGGTGCGTTTGGATCGTCTCCATCCAGACGACATGTCGATCGTGAGAGTGAGTTTTGTAGGAAATCAAACGACGAGTCGTCATCGTCATCATCGTCTTTGTCTTGTATTTCTTATTCCTTGTCTTCGAATTCTTCTTCTGCTCTTTATAACCGACGGCGCTCTAAACTGGGTAGCCTCGCCAAAAATTTCATTAGGTGGGCCTTCTGA
Coding sequence (CDS)
ATGGCAAAAGATCACACTCTTCATCTCTCTGAAAAACCCTTTTCATTACTCCAAGCAAATGAATTATTTGTCCACAAAATCCTTTCTAGAAACTCCTCATTTGGCCGCTCTGCCCGTCTCCCTGCCTGTAGCCTGCCCGGTCAAATCCCTTTCAATTGGGAAGCCCAGCCCGGGCTGCCCAAAAACCAACCCTCCCAAATTCTCCCCCCGCTCGACCTCCCGCCGCCGTCACCCTCCGCCGTAGACCTCTCCATAACTCCTCACATTGTCCCCAAGCGACCGCCTGCTAAGATTTGCTTTTGGAAAAAACCGAGGAGAAAATTGAGGCGTGTGGTTAACAAAAACGGTGCGTTTGGATCGTCTCCATCCAGACGACATGTCGATCGTGAGAGTGAGTTTTGTAGGAAATCAAACGACGAGTCGTCATCGTCATCATCGTCTTTGTCTTGTATTTCTTATTCCTTGTCTTCGAATTCTTCTTCTGCTCTTTATAACCGACGGCGCTCTAAACTGGGTAGCCTCGCCAAAAATTTCATTAGGTGGGCCTTCTGA
Protein sequence
MAKDHTLHLSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLPKNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICFWKKPRRKLRRVVNKNGAFGSSPSRRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSALYNRRRSKLGSLAKNFIRWAF
Homology
BLAST of Lsi06G011780 vs. ExPASy TrEMBL
Match:
A0A0A0LWV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423170 PE=4 SV=1)
HSP 1 Score: 267.7 bits (683), Expect = 3.6e-68
Identity = 145/188 (77.13%), Postives = 157/188 (83.51%), Query Frame = 0
Query: 2 AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLP 61
AKDHTLH LSEKPFSLLQAN+LFVHKILSRNSSFGRSARLPAC LPGQ+PFNWEAQPGLP
Sbjct: 3 AKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLP 62
Query: 62 KNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICFWKKPRRKLRRVVNKNGAFGS 121
KNQPS PP+ LPPPS SA+ LS TPH+VPK+ P KI FW K RRK RR V K+GA GS
Sbjct: 63 KNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKSGALGS 122
Query: 122 SPSRRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSLA 181
S RRHVDR+SEFCRK +++ SSSSSSLSCISYS+SSNSSSA NRRR KLGSLA
Sbjct: 123 SSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLA 182
Query: 182 KNFIRWAF 184
K FIRWAF
Sbjct: 183 KEFIRWAF 190
BLAST of Lsi06G011780 vs. ExPASy TrEMBL
Match:
A0A5D3CKX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00370 PE=4 SV=1)
HSP 1 Score: 266.5 bits (680), Expect = 8.0e-68
Identity = 147/189 (77.78%), Postives = 156/189 (82.54%), Query Frame = 0
Query: 2 AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLP 61
AKDHTLH LSEKPFSLLQAN+ FVHKILSRNSSFGRSARLPAC LPGQIPFNWE QPGLP
Sbjct: 3 AKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLP 62
Query: 62 KNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICFWKKPRRKLRRVVNKNGAFGS 121
KNQPS+ PP +LPPPS SA LS TPH+VPK+ P KI FW K RRK RR V KNGA GS
Sbjct: 63 KNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGALGS 122
Query: 122 SPS-RRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSL 181
S S RRHVDRESEFCR+ +++ S SSSSLSCISYSLSSNSSSA NRRRSKLGSL
Sbjct: 123 SSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSL 182
Query: 182 AKNFIRWAF 184
AK FIRWAF
Sbjct: 183 AKEFIRWAF 191
BLAST of Lsi06G011780 vs. ExPASy TrEMBL
Match:
A0A5A7UQX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005980 PE=4 SV=1)
HSP 1 Score: 266.5 bits (680), Expect = 8.0e-68
Identity = 147/189 (77.78%), Postives = 156/189 (82.54%), Query Frame = 0
Query: 2 AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLP 61
AKDHTLH LSEKPFSLLQAN+ FVHKILSRNSSFGRSARLPAC LPGQIPFNWE QPGLP
Sbjct: 3 AKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLP 62
Query: 62 KNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICFWKKPRRKLRRVVNKNGAFGS 121
KNQPS+ PP +LPPPS SA LS TPH+VPK+ P KI FW K RRK RR V KNGA GS
Sbjct: 63 KNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGALGS 122
Query: 122 SPS-RRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSL 181
S S RRHVDRESEFCR+ +++ S SSSSLSCISYSLSSNSSSA NRRRSKLGSL
Sbjct: 123 SSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSL 182
Query: 182 AKNFIRWAF 184
AK FIRWAF
Sbjct: 183 AKEFIRWAF 191
BLAST of Lsi06G011780 vs. ExPASy TrEMBL
Match:
A0A6J1JJ17 (uncharacterized protein LOC111485037 OS=Cucurbita maxima OX=3661 GN=LOC111485037 PE=4 SV=1)
HSP 1 Score: 227.6 bits (579), Expect = 4.1e-56
Identity = 138/189 (73.02%), Postives = 151/189 (79.89%), Query Frame = 0
Query: 1 MAKDHTLHLSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLP 60
M DH LH SE PFSLLQANELFVHKILSRNSS GRSARLPAC LPGQIPF WEAQPGLP
Sbjct: 1 MGNDHRLHPSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLP 60
Query: 61 KNQPSQILPPLDLPPPSPSAVD-LSITPHIVPK-RPPAKICFWKKPRRKLRRVVNKNGAF 120
K++PS+ L PPP P+ VD S TPH VPK + AKI W KPR+KLR VV KNGAF
Sbjct: 61 KDKPSENLH----PPPPPNYVDGTSKTPHQVPKQQEAAKIWSWMKPRKKLRNVVKKNGAF 120
Query: 121 GSSPSRR-HVDRESEFCRKSNDESSSSS--SSLSCISYSLSSNSSSAL-YNRRRSKLGSL 180
GSS S R HV++ESEFCRKSNDESSSS+ SSLSCIS+SLSS+SSS+ Y RRRSKL SL
Sbjct: 121 GSSSSSRPHVNQESEFCRKSNDESSSSTTPSSLSCISHSLSSSSSSSNGYARRRSKLSSL 180
Query: 181 AKNFIRWAF 184
AK F+RWAF
Sbjct: 181 AKGFLRWAF 185
BLAST of Lsi06G011780 vs. ExPASy TrEMBL
Match:
A0A2P5E1Z5 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_235730 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 9.9e-10
Identity = 74/194 (38.14%), Postives = 97/194 (50.00%), Query Frame = 0
Query: 10 SEKP-FSLLQANELFVHKILSRNSSFG---RSARLPACSLPGQIPFNWEAQPGLPKNQPS 69
SEKP S+LQANELFV KILSRNSS G S L ++PF WE+QPG PK+ P
Sbjct: 9 SEKPSVSVLQANELFVKKILSRNSSIGDNTTSHHLSNFKTRAEVPFKWESQPGKPKDPPK 68
Query: 70 QIL-------PPLDLPPPSPSAVDLSITPHIVPKRPPAKICFWKK-PRRKLRRVVNKNGA 129
P +DLP P+ A + P V FWKK +R+ ++VV K
Sbjct: 69 GTAHQLTGSPPAVDLPQPAVVARGVHAPPPAVAPNVSGGRPFWKKLGKRRQKQVVKKVEP 128
Query: 130 FGSSPSRRHVDRESEFCRKSNDESSSSSSSLSCIS----YSLSSNSSSALYN----RRRS 184
G S + R +D + S +SSS SC S S SS++S+ YN + RS
Sbjct: 129 AGPSAAARGLDNSNNNGSNHLTFSVASSSPRSCCSSSSVASASSSASNTSYNNLGVKPRS 188
BLAST of Lsi06G011780 vs. NCBI nr
Match:
KGN65459.1 (hypothetical protein Csa_020126 [Cucumis sativus])
HSP 1 Score: 267.7 bits (683), Expect = 7.4e-68
Identity = 145/188 (77.13%), Postives = 157/188 (83.51%), Query Frame = 0
Query: 2 AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLP 61
AKDHTLH LSEKPFSLLQAN+LFVHKILSRNSSFGRSARLPAC LPGQ+PFNWEAQPGLP
Sbjct: 3 AKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLP 62
Query: 62 KNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICFWKKPRRKLRRVVNKNGAFGS 121
KNQPS PP+ LPPPS SA+ LS TPH+VPK+ P KI FW K RRK RR V K+GA GS
Sbjct: 63 KNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKSGALGS 122
Query: 122 SPSRRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSLA 181
S RRHVDR+SEFCRK +++ SSSSSSLSCISYS+SSNSSSA NRRR KLGSLA
Sbjct: 123 SSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLA 182
Query: 182 KNFIRWAF 184
K FIRWAF
Sbjct: 183 KEFIRWAF 190
BLAST of Lsi06G011780 vs. NCBI nr
Match:
TYK11824.1 (hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa])
HSP 1 Score: 266.5 bits (680), Expect = 1.6e-67
Identity = 147/189 (77.78%), Postives = 156/189 (82.54%), Query Frame = 0
Query: 2 AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLP 61
AKDHTLH LSEKPFSLLQAN+ FVHKILSRNSSFGRSARLPAC LPGQIPFNWE QPGLP
Sbjct: 3 AKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLP 62
Query: 62 KNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICFWKKPRRKLRRVVNKNGAFGS 121
KNQPS+ PP +LPPPS SA LS TPH+VPK+ P KI FW K RRK RR V KNGA GS
Sbjct: 63 KNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGALGS 122
Query: 122 SPS-RRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSL 181
S S RRHVDRESEFCR+ +++ S SSSSLSCISYSLSSNSSSA NRRRSKLGSL
Sbjct: 123 SSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSL 182
Query: 182 AKNFIRWAF 184
AK FIRWAF
Sbjct: 183 AKEFIRWAF 191
BLAST of Lsi06G011780 vs. NCBI nr
Match:
KAA0058272.1 (hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa])
HSP 1 Score: 266.5 bits (680), Expect = 1.6e-67
Identity = 147/189 (77.78%), Postives = 156/189 (82.54%), Query Frame = 0
Query: 2 AKDHTLH-LSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLP 61
AKDHTLH LSEKPFSLLQAN+ FVHKILSRNSSFGRSARLPAC LPGQIPFNWE QPGLP
Sbjct: 3 AKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLP 62
Query: 62 KNQPSQILPPLDLPPPSPSAVDLSITPHIVPKRPPAKICFWKKPRRKLRRVVNKNGAFGS 121
KNQPS+ PP +LPPPS SA LS TPH+VPK+ P KI FW K RRK RR V KNGA GS
Sbjct: 63 KNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGALGS 122
Query: 122 SPS-RRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSA-----LYNRRRSKLGSL 181
S S RRHVDRESEFCR+ +++ S SSSSLSCISYSLSSNSSSA NRRRSKLGSL
Sbjct: 123 SSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSL 182
Query: 182 AKNFIRWAF 184
AK FIRWAF
Sbjct: 183 AKEFIRWAF 191
BLAST of Lsi06G011780 vs. NCBI nr
Match:
XP_022987494.1 (uncharacterized protein LOC111485037 [Cucurbita maxima])
HSP 1 Score: 227.6 bits (579), Expect = 8.5e-56
Identity = 138/189 (73.02%), Postives = 151/189 (79.89%), Query Frame = 0
Query: 1 MAKDHTLHLSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLP 60
M DH LH SE PFSLLQANELFVHKILSRNSS GRSARLPAC LPGQIPF WEAQPGLP
Sbjct: 1 MGNDHRLHPSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLP 60
Query: 61 KNQPSQILPPLDLPPPSPSAVD-LSITPHIVPK-RPPAKICFWKKPRRKLRRVVNKNGAF 120
K++PS+ L PPP P+ VD S TPH VPK + AKI W KPR+KLR VV KNGAF
Sbjct: 61 KDKPSENLH----PPPPPNYVDGTSKTPHQVPKQQEAAKIWSWMKPRKKLRNVVKKNGAF 120
Query: 121 GSSPSRR-HVDRESEFCRKSNDESSSSS--SSLSCISYSLSSNSSSAL-YNRRRSKLGSL 180
GSS S R HV++ESEFCRKSNDESSSS+ SSLSCIS+SLSS+SSS+ Y RRRSKL SL
Sbjct: 121 GSSSSSRPHVNQESEFCRKSNDESSSSTTPSSLSCISHSLSSSSSSSNGYARRRSKLSSL 180
Query: 181 AKNFIRWAF 184
AK F+RWAF
Sbjct: 181 AKGFLRWAF 185
BLAST of Lsi06G011780 vs. NCBI nr
Match:
KAG6589705.1 (Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 219.5 bits (558), Expect = 2.3e-53
Identity = 133/184 (72.28%), Postives = 148/184 (80.43%), Query Frame = 0
Query: 1 MAKDHTLHLSEKPFSLLQANELFVHKILSRNSSFGRSARLPACSLPGQIPFNWEAQPGLP 60
M +H LHLSE PFSLLQANELFVHKILSRNSS GRSARLPAC LPGQIPF WEAQPGLP
Sbjct: 1 MGNEHRLHLSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLP 60
Query: 61 KNQPSQILPPLDLPPPSPSAVD-LSITPHIVP-KRPPAKICFWKKPRRKLRRVVNKNGAF 120
K++PS+ L PPPSP++V S TPH VP ++ AKI FW KPR+KLR VV KNGAF
Sbjct: 61 KDKPSENLQ----PPPSPNSVQGASKTPHQVPEQQEAAKIWFWMKPRKKLRNVVKKNGAF 120
Query: 121 G-SSPSRRHVDRESEFCRKSNDESSSSSSSLSCISYSLSSNSSSAL-YNRRRSKLGSLAK 180
G SS SRRHV++ESEF RKSNDE SSSSLSCIS+SLSS+SSS+ Y RRRSKL SLAK
Sbjct: 121 GSSSSSRRHVNQESEFYRKSNDE---SSSSLSCISHSLSSSSSSSNGYARRRSKLSSLAK 177
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LWV3 | 3.6e-68 | 77.13 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423170 PE=4 SV=1 | [more] |
A0A5D3CKX4 | 8.0e-68 | 77.78 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7UQX0 | 8.0e-68 | 77.78 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A6J1JJ17 | 4.1e-56 | 73.02 | uncharacterized protein LOC111485037 OS=Cucurbita maxima OX=3661 GN=LOC111485037... | [more] |
A0A2P5E1Z5 | 9.9e-10 | 38.14 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_235730 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |
KGN65459.1 | 7.4e-68 | 77.13 | hypothetical protein Csa_020126 [Cucumis sativus] | [more] |
TYK11824.1 | 1.6e-67 | 77.78 | hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa] | [more] |
KAA0058272.1 | 1.6e-67 | 77.78 | hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa] | [more] |
XP_022987494.1 | 8.5e-56 | 73.02 | uncharacterized protein LOC111485037 [Cucurbita maxima] | [more] |
KAG6589705.1 | 2.3e-53 | 72.28 | Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. s... | [more] |
Match Name | E-value | Identity | Description | |