Lsi06G011350 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G011350
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDUF761 domain-containing protein
Locationchr06: 21605353 .. 21605724 (+)
RNA-Seq ExpressionLsi06G011350
SyntenyLsi06G011350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCGAGTAGCTTATTGGGTCGGCTGAGGAACGCCGTGAAGAAGCTTAAATTCATGATGAACTTTAGCATCCAAAGCTGGCGGTTGGCGGCCATGTTGGGGCGGACTTCATCGAGAAATCTCCGCCTTAGCTTCAACGAACGCCCAGGATTAAAGGGCTGTACGGAGGATATTATAGAAGAAGGGTCTGTTTCTTCATCTCGTGGGATACAAAGAACCGCCAGCTACGCTTCTGAAGATGACGTGGACCTGCGAGCGGAGGCTTTCATAGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGGTGTCACTTGAGCTTCAATATTGCCGTGGGAATAGTTTTAATCAACTTATGATTTCTCCTTGA

mRNA sequence

ATGGCGGCGAGTAGCTTATTGGGTCGGCTGAGGAACGCCGTGAAGAAGCTTAAATTCATGATGAACTTTAGCATCCAAAGCTGGCGGTTGGCGGCCATGTTGGGGCGGACTTCATCGAGAAATCTCCGCCTTAGCTTCAACGAACGCCCAGGATTAAAGGGCTGTACGGAGGATATTATAGAAGAAGGGTCTGTTTCTTCATCTCGTGGGATACAAAGAACCGCCAGCTACGCTTCTGAAGATGACGTGGACCTGCGAGCGGAGGCTTTCATAGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGGTGTCACTTGAGCTTCAATATTGCCGTGGGAATAGTTTTAATCAACTTATGATTTCTCCTTGA

Coding sequence (CDS)

ATGGCGGCGAGTAGCTTATTGGGTCGGCTGAGGAACGCCGTGAAGAAGCTTAAATTCATGATGAACTTTAGCATCCAAAGCTGGCGGTTGGCGGCCATGTTGGGGCGGACTTCATCGAGAAATCTCCGCCTTAGCTTCAACGAACGCCCAGGATTAAAGGGCTGTACGGAGGATATTATAGAAGAAGGGTCTGTTTCTTCATCTCGTGGGATACAAAGAACCGCCAGCTACGCTTCTGAAGATGACGTGGACCTGCGAGCGGAGGCTTTCATAGCTAATTTCTATCGCCAGCTCAGAATCGAACGCCAGGTGTCACTTGAGCTTCAATATTGCCGTGGGAATAGTTTTAATCAACTTATGATTTCTCCTTGA

Protein sequence

MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDIIEEGSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFNQLMISP
Homology
BLAST of Lsi06G011350 vs. ExPASy TrEMBL
Match: A0A6J1JIQ4 (uncharacterized protein LOC111484948 OS=Cucurbita maxima OX=3661 GN=LOC111484948 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.5e-46
Identity = 107/126 (84.92%), Postives = 113/126 (89.68%), Query Frame = 0

Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           MAA+SLLGRLRNAV+KLKFMM F+IQSWRLAAMLGRTSSRNLRLSFNE PGLK C EDII
Sbjct: 1   MAATSLLGRLRNAVEKLKFMMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  E--EGSVSSSR-GIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 120
           E  E S SSSR G+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLELQYCRGNS  
Sbjct: 61  ESSEHSNSSSRGGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELQYCRGNSSK 120

Query: 121 QLMISP 124
           QL++SP
Sbjct: 121 QLIVSP 126

BLAST of Lsi06G011350 vs. ExPASy TrEMBL
Match: A0A0A0LUK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423060 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.9e-45
Identity = 103/120 (85.83%), Postives = 108/120 (90.00%), Query Frame = 0

Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           M A SLLGRLR AVKK++FMMNFSIQ WRLAAMLGRTSSRNLRLSF ERPGLK C+EDII
Sbjct: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60

Query: 61  --EEGSV-SSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 118
             EE SV SSSRG+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLELQYCRGNSF+
Sbjct: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120

BLAST of Lsi06G011350 vs. ExPASy TrEMBL
Match: A0A6J1C4F5 (uncharacterized protein LOC111007290 OS=Momordica charantia OX=3673 GN=LOC111007290 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.4e-45
Identity = 101/124 (81.45%), Postives = 110/124 (88.71%), Query Frame = 0

Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           MA SSLLGRLR AV+K++FM+NFSIQSWRLAAM+GRTSSRNLRLSFNERPGLK CTED I
Sbjct: 1   MAGSSLLGRLRKAVRKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTED-I 60

Query: 61  EEGSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSF-NQL 120
            E S   S G+QRTASYASEDDVD RA+ FIANFYRQL+IERQVSLELQYCRGNSF N L
Sbjct: 61  TESSQHYSPGLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFNNHL 120

Query: 121 MISP 124
           +ISP
Sbjct: 121 LISP 123

BLAST of Lsi06G011350 vs. ExPASy TrEMBL
Match: A0A6J1E1K7 (uncharacterized protein LOC111429947 OS=Cucurbita moschata OX=3662 GN=LOC111429947 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.9e-44
Identity = 100/126 (79.37%), Postives = 110/126 (87.30%), Query Frame = 0

Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           MAA+SLLGRLR AV+KLKF+M F+IQSWRLAAMLGRTSSRNLRLSFNE PGLK C EDII
Sbjct: 1   MAATSLLGRLRKAVEKLKFVMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  ---EEGSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 120
              E  + SS RG+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLEL+YCRG+S  
Sbjct: 61  ESSEHSNSSSRRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGSSSK 120

Query: 121 QLMISP 124
           QL++SP
Sbjct: 121 QLIVSP 126

BLAST of Lsi06G011350 vs. ExPASy TrEMBL
Match: A0A5D3CK96 (DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00610 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.2e-44
Identity = 102/120 (85.00%), Postives = 106/120 (88.33%), Query Frame = 0

Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLK-GCTEDI 60
           M A SLLGRLR AVKK+KFMMNFSIQ WRLAAMLGRTSSRNLRLSFNERPGLK  C+EDI
Sbjct: 1   MEAISLLGRLRKAVKKIKFMMNFSIQRWRLAAMLGRTSSRNLRLSFNERPGLKAACSEDI 60

Query: 61  I--EEGSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 118
           I  EE   SSSRG+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLELQYCR NSF+
Sbjct: 61  IMEEEPVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRRNSFD 120

BLAST of Lsi06G011350 vs. NCBI nr
Match: XP_038879799.1 (uncharacterized protein LOC120071543 [Benincasa hispida])

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-52
Identity = 112/123 (91.06%), Postives = 116/123 (94.31%), Query Frame = 0

Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           MAASS+L RLR AVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGL  CTEDII
Sbjct: 1   MAASSVLNRLRKAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLMACTEDII 60

Query: 61  EEGSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFNQLM 120
           EE SVSSSRG+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLELQYCRGNSFN+L+
Sbjct: 61  EEESVSSSRGLQRTTSYASEDDVDKRAEAFIANFYRQLRIERQVSLELQYCRGNSFNKLI 120

Query: 121 ISP 124
           ISP
Sbjct: 121 ISP 123

BLAST of Lsi06G011350 vs. NCBI nr
Match: XP_023515447.1 (uncharacterized protein LOC111779603 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.1 bits (505), Expect = 2.2e-47
Identity = 106/125 (84.80%), Postives = 113/125 (90.40%), Query Frame = 0

Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           MAA+SLLGRLR AV+KLKFMM F+IQSWRLAAMLGRTSSRNLRLSFNE PGLK C EDII
Sbjct: 1   MAATSLLGRLRKAVEKLKFMMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  E--EGSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFNQ 120
           E  E S SSSRG+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLEL+YCRGNSF Q
Sbjct: 61  ESSEHSNSSSRGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELRYCRGNSFKQ 120

Query: 121 LMISP 124
           L++SP
Sbjct: 121 LIVSP 125

BLAST of Lsi06G011350 vs. NCBI nr
Match: XP_022987374.1 (uncharacterized protein LOC111484948 [Cucurbita maxima])

HSP 1 Score: 195.3 bits (495), Expect = 3.1e-46
Identity = 107/126 (84.92%), Postives = 113/126 (89.68%), Query Frame = 0

Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           MAA+SLLGRLRNAV+KLKFMM F+IQSWRLAAMLGRTSSRNLRLSFNE PGLK C EDII
Sbjct: 1   MAATSLLGRLRNAVEKLKFMMKFNIQSWRLAAMLGRTSSRNLRLSFNESPGLKVCKEDII 60

Query: 61  E--EGSVSSSR-GIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 120
           E  E S SSSR G+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLELQYCRGNS  
Sbjct: 61  ESSEHSNSSSRGGLQRTPSYASEDDVDKRAEAFIANFYRQLRIERQVSLELQYCRGNSSK 120

Query: 121 QLMISP 124
           QL++SP
Sbjct: 121 QLIVSP 126

BLAST of Lsi06G011350 vs. NCBI nr
Match: XP_011648497.1 (uncharacterized protein LOC101218317 [Cucumis sativus] >KGN65448.1 hypothetical protein Csa_019865 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.0e-44
Identity = 103/120 (85.83%), Postives = 108/120 (90.00%), Query Frame = 0

Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           M A SLLGRLR AVKK++FMMNFSIQ WRLAAMLGRTSSRNLRLSF ERPGLK C+EDII
Sbjct: 1   MEAISLLGRLRKAVKKIRFMMNFSIQRWRLAAMLGRTSSRNLRLSFTERPGLKACSEDII 60

Query: 61  --EEGSV-SSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSFN 118
             EE SV SSSRG+QRT SYASEDDVD RAEAFIANFYRQLRIERQVSLELQYCRGNSF+
Sbjct: 61  MEEEQSVSSSSRGLQRTTSYASEDDVDSRAEAFIANFYRQLRIERQVSLELQYCRGNSFD 120

BLAST of Lsi06G011350 vs. NCBI nr
Match: XP_022135293.1 (uncharacterized protein LOC111007290 [Momordica charantia])

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44
Identity = 101/124 (81.45%), Postives = 110/124 (88.71%), Query Frame = 0

Query: 1   MAASSLLGRLRNAVKKLKFMMNFSIQSWRLAAMLGRTSSRNLRLSFNERPGLKGCTEDII 60
           MA SSLLGRLR AV+K++FM+NFSIQSWRLAAM+GRTSSRNLRLSFNERPGLK CTED I
Sbjct: 1   MAGSSLLGRLRKAVRKVRFMINFSIQSWRLAAMMGRTSSRNLRLSFNERPGLKACTED-I 60

Query: 61  EEGSVSSSRGIQRTASYASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGNSF-NQL 120
            E S   S G+QRTASYASEDDVD RA+ FIANFYRQL+IERQVSLELQYCRGNSF N L
Sbjct: 61  TESSQHYSPGLQRTASYASEDDVDKRADMFIANFYRQLQIERQVSLELQYCRGNSFNNHL 120

Query: 121 MISP 124
           +ISP
Sbjct: 121 LISP 123

BLAST of Lsi06G011350 vs. TAIR 10
Match: AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 114.4 bits (285), Expect = 6.5e-26
Identity = 72/121 (59.50%), Postives = 90/121 (74.38%), Query Frame = 0

Query: 5   SLLGRLRNAVKKLKFMMNFSIQS-WRLAAMLG-RTSSRNLRLSFNERPGLKGC-TEDIIE 64
           SLL RLR AV K+KF+++F I S W L  MLG  +SS +LRLSFN+RPGL    TE+  E
Sbjct: 8   SLLNRLRQAVNKVKFVLSFKINSLWGLVPMLGSSSSSSSLRLSFNDRPGLTAAFTEN--E 67

Query: 65  EGSVSSSRG-IQRTASY--ASEDDVDLRAEAFIANFYRQLRIERQVSLELQYCRGN--SF 118
             S  SSRG + RT SY  +S++D+D +AE FIANFYRQL+IERQ+SLEL+YC+GN  SF
Sbjct: 68  PDSTGSSRGALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQSF 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JIQ41.5e-4684.92uncharacterized protein LOC111484948 OS=Cucurbita maxima OX=3661 GN=LOC111484948... [more]
A0A0A0LUK44.9e-4585.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423060 PE=4 SV=1[more]
A0A6J1C4F56.4e-4581.45uncharacterized protein LOC111007290 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A6J1E1K71.9e-4479.37uncharacterized protein LOC111429947 OS=Cucurbita moschata OX=3662 GN=LOC1114299... [more]
A0A5D3CK969.2e-4485.00DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
Match NameE-valueIdentityDescription
XP_038879799.11.7e-5291.06uncharacterized protein LOC120071543 [Benincasa hispida][more]
XP_023515447.12.2e-4784.80uncharacterized protein LOC111779603 [Cucurbita pepo subsp. pepo][more]
XP_022987374.13.1e-4684.92uncharacterized protein LOC111484948 [Cucurbita maxima][more]
XP_011648497.11.0e-4485.83uncharacterized protein LOC101218317 [Cucumis sativus] >KGN65448.1 hypothetical ... [more]
XP_022135293.11.3e-4481.45uncharacterized protein LOC111007290 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT5G57510.16.5e-2659.50unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008480Protein of unknown function DUF761, plantPFAMPF05553DUF761coord: 80..111
e-value: 4.5E-12
score: 45.3
NoneNo IPR availablePANTHERPTHR33098COTTON FIBER (DUF761)coord: 1..119
NoneNo IPR availablePANTHERPTHR33098:SF64OS08G0448100 PROTEINcoord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G011350.1Lsi06G011350.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071456 cellular response to hypoxia