Lsi06G011040 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G011040
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Glutamate receptor
Location	chr06: 21288449 .. 21291980 (-)
RNA-Seq Expression	Lsi06G011040
Synteny	Lsi06G011040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTCAAGAAGAAGCAGTGATCAAAGAAACTCAAAGAATTTGTGGAAACTCAAAAAATGAAGGAAAAAAATCATACCATGATCCGTCTTAGAATTAGATGATATCAAAGAATCCTTTGACTCCTTACTAAGGTCGAAACTTATGAAACTAAGAAATGTTAAAGCTAAATTAACGGAAAAAACAATAAAAATTGTTGATCACCCTTACCACTAGGTGGACCCAGGCCAAGGTCAATAAGCCTAAAGTATTGTTCGAACTTTGATCGGGTCAACCCAAATAATTTGGGTTGAACTTTGGATCGACTGTGATTGGATTAGGTCATTGAGTATTAACTATCTTTTTATTTATTTTTTAACAATTTTCTTATTTAACTGTTTTAACTTTTTGAGATGTTTTCAAATATAGCAAAATAAGTTAAAATATTTACAAATATAGACAATGATAGATACAAATAGACTACTGTCATCTATTGGTCTATTATTAGTGATAGACATTGATAGATGACCTAATCTTATCAGTGTCTATCATTGTCCATCACTGATAAATAGTAACATTGTTACATTTTAAAATATTTCCAACAGTTTCTCTATTTAAAATAATTACTTTTTTTAATTTCTACTTTTTATTGAATTTATTTTAAAATAATGGTATTTTAATTACTTTTATTTAATAAAACTATTGATATAATAAAATTTCACTTAGCATATATATATATATATATATATATATATATATATATATATATATATATTAGTTTTTTCACTATTTTAAATATTTTATACTAACTAAAAAAATATCTAAAATATAAAAATAGGGAAAAGTTTACTTTAATATGAAACGTATTAGTGTTTTTTTATTAAACGTGTTTGGTAAATAAATACTAAATCATCGTGTTTTAGATATAATAACTAAAACAACCTAATATTATTGTTTTATAATTTATAATTATTAAATAATAGTTTAAAATAAATCTTAATTTTAAATGATAAAATTAAAAAATTAAATTGTATTAAAAATTGCATGAATCTAAAACGAACTAATTTTAGGAAGGGTGTGAAATGAATGTATAATTTATAAGTGATTTTAATAGATTTAATCCTAATTTGTTTTACCAAACACAAAAATTGGTTAATATTATTTTATTTTCACTGGTCTTTTTCTTAAAATCAACTCCAAATGCAGTCTTAGTAAATTCGGATTTGTTTGGTTCGCACTTTGGATTCTCAGTTCAGCGAATATGTAAATGGCAAACAACTTAAATTCTGTTTCTGGATTCTGTGATTCAAACCGTGTAAATTCTAAAAATAATATTTTTATGTTTTCATTGTATCCAAAATTTGAATTTTAAAATTTAAAATGTTATAGTAAATAATGATAAAAACATTTAGAAATATAGTACGTCATATTATAAACTCAATTCAATTTTTTTAATTAAAATATATATTATGTAATTATTATAAATTAGGTTAAATTCCAAATTTGGTCCCTATGATTTAGATAAAGTTACAAGTTAGTTCATATGGTTTTAAAATTCAGAATTTAGTTTTTATTGTTTGATACAACTTCATATATTGTCTTTATGGGTTGTTAAATCCTCTTAAATAATCTTTTATCATAGGAATTATTTAGGAAGTTTTTATCAAACCACAAAGAGTTATTATTCTAATTATAAACCTTAAAACCTAAATTTTAACTTCTTCCCAACCATAGGGACAAAAGTTTCACTTTATCTCATACATTATATAATATTACAAATTACAAAATAATAATTATACAATTAATTTTCTTCACATAAAACCATATTCATAAATAAATTAATAATAGTTTATTGTCAATTGATATTTAGTGAGTTTACTACAACTAGTTTGCAATTGTTTAAATTAGAATCTAATTTCTAAATTCGGTTACCAAACACATATCTAAAAACATGAAATACAACTGTGTTTTTATTTAATCTTTTTAAATTTGTGTTTTCAGATTCTCTACCAAGCATGTCCTTAGTAACTTTTAGACAACATGGGTTCAATTGTGAAGTTCGTCTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTGAAGAGTCCAATTTAGCTAATTGTGCAACTAATGTATATATAGTATGTATGTGTAATAGTGTGGGTAATGTGCTGACACAGTGTAATTTTGTGTGTGGCCTTGTTTTTCGATAATGCATGTAGTTTTGTTGAGTAAAATATCTTGGAGTGTCGCCCAAATTTTATTGGTTGAGTTGCAGTGTAAGTTGTAACTAATAAACTACCTATATAACCTAAGTTTTCCAACTAAATAAATTTGGCATAAATGCATTATGTAATTTTGGAGAATTCGAGGCCCTTAGCAAGAACCTTGAATTGAAGAATTTTTGTTGGAAGTGGTTGTTGGAGCAATTACCTTTTAGGAGAATTAATAGAATTTTTATCAGAGGGTGGAGCAGTGGTTTCTACACAATTGCAAAATTAGAAAAGAGATATTATTTTGCAAAAATGAAGATGAGGTAATTCAGAATTCAGAGAAGTCTTATTTGATTCTGTTTCGAAAGAAAAAAATATTGCAAAAGAAGCAGATACATAATCTGAAAAATAGTTCATTGTAGAAGAATGAGACTAACAACACAAATTATTTGAAATGAACAAGTGATTTATTTATACCCGATTTCTAATTTGGCTGGATGTGAACACGGAAAAACTTCATTGATGAAGCTGCTTGCAGCACATATACCCGCTTGCAGCACTAACAACCGCATGTTGGACTGAAAGTCGCCTGCGACTAAATGTGTGATAGTTTTCGTAATATCCTGCTAAATATAAATAATCAATCTCTCGATTCAAACTTCTATTTTCTATAAATTTTGTTCTAATAAACTCTCCAAGTTTTAGTTTTGGTTCTTCTGGAATGCACTTGGATTCATCTGTCAATGGACCTAAGGGATCCATCCTCGGTAAGAGCTCTCATTCCCTCATTGCCAAATTGTATTCATATTCTCCTTTTAATTTTGGAGAAATTCCACTTTCTCTTTTTAATTCTGTAGAGAGTCCACTATCAAATTAAAATTCTAAGATGTATTACAGGAAATATGTGTCGTTTCAGTAGCATTCACATCTTGATGAGAAGGACAAGGAAATGGACGACGTGTCGAAATCGTCAGAAGTTGTTTCAGCTGATTCAGATCATGGTTGTCACGATGGAAGTGCTTGTCTCCCAAAATATGTTGAGACCACTAGCTAA

mRNA sequence

ATGAAGTCCAATTTAGCTAATTGTGCAACTAATAGGGTGGAGCAGTGGTTTCTACACAATTGCAAAATTAGAAAAGAGATATTATTTTGCAAAAATGAAGATGAGCATTCACATCTTGATGAGAAGGACAAGGAAATGGACGACGTGTCGAAATCGTCAGAAGTTGTTTCAGCTGATTCAGATCATGGTTGTCACGATGGAAGTGCTTGTCTCCCAAAATATGTTGAGACCACTAGCTAA

Coding sequence (CDS)

ATGAAGTCCAATTTAGCTAATTGTGCAACTAATAGGGTGGAGCAGTGGTTTCTACACAATTGCAAAATTAGAAAAGAGATATTATTTTGCAAAAATGAAGATGAGCATTCACATCTTGATGAGAAGGACAAGGAAATGGACGACGTGTCGAAATCGTCAGAAGTTGTTTCAGCTGATTCAGATCATGGTTGTCACGATGGAAGTGCTTGTCTCCCAAAATATGTTGAGACCACTAGCTAA

Protein sequence

MKSNLANCATNRVEQWFLHNCKIRKEILFCKNEDEHSHLDEKDKEMDDVSKSSEVVSADSDHGCHDGSACLPKYVETTS

Homology

[Close]

BLAST of Lsi06G011040 vs. ExPASy TrEMBL
Match: A0A5A7V8Q7 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold117G00030 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.4e-05
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 35  EHSHLDEKDKEMDDVSKSSEVVSADSDHGCHDGSACLPKYV 76
           E SH D KDKEMDD+SKSSE VSAD+DHGCHDGSA   K+V
Sbjct: 786 EDSHSDVKDKEMDDMSKSSE-VSADADHGCHDGSAGPSKHV 825

[Close]

BLAST of Lsi06G011040 vs. ExPASy TrEMBL
Match: A0A5D3CC94 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00700 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.4e-05
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 35  EHSHLDEKDKEMDDVSKSSEVVSADSDHGCHDGSACLPKYV 76
           E SH D KDKEMDD+SKSSE VSAD+DHGCHDGSA   K+V
Sbjct: 786 EDSHSDVKDKEMDDMSKSSE-VSADADHGCHDGSAGPSKHV 825

[Close]

BLAST of Lsi06G011040 vs. ExPASy TrEMBL
Match: A0A1S3BWV8 (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103494304 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.4e-05
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 35  EHSHLDEKDKEMDDVSKSSEVVSADSDHGCHDGSACLPKYV 76
           E SH D KDKEMDD+SKSSE VSAD+DHGCHDGSA   K+V
Sbjct: 890 EDSHSDVKDKEMDDMSKSSE-VSADADHGCHDGSAGPSKHV 929

[Close]

BLAST of Lsi06G011040 vs. NCBI nr
Match: XP_038880119.1 (glutamate receptor 2.2-like isoform X3 [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 9.1e-07
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 36  HSHLDEKDKEMDDVSKSSEVVSADSDHGCHDGSACLPKYV-ETTS 80
           HSH D KDKEMDD+SKSSE VSAD+DHGCHD SA   K+V ETTS
Sbjct: 788 HSHSDVKDKEMDDMSKSSEAVSADADHGCHDSSAGPAKHVTETTS 832

[Close]

BLAST of Lsi06G011040 vs. NCBI nr
Match: XP_038880117.1 (glutamate receptor 2.2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 9.1e-07
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 36  HSHLDEKDKEMDDVSKSSEVVSADSDHGCHDGSACLPKYV-ETTS 80
           HSH D KDKEMDD+SKSSE VSAD+DHGCHD SA   K+V ETTS
Sbjct: 854 HSHSDVKDKEMDDMSKSSEAVSADADHGCHDSSAGPAKHVTETTS 898

[Close]

BLAST of Lsi06G011040 vs. NCBI nr
Match: XP_038880118.1 (glutamate receptor 2.2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 9.1e-07
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 36  HSHLDEKDKEMDDVSKSSEVVSADSDHGCHDGSACLPKYV-ETTS 80
           HSH D KDKEMDD+SKSSE VSAD+DHGCHD SA   K+V ETTS
Sbjct: 853 HSHSDVKDKEMDDMSKSSEAVSADADHGCHDSSAGPAKHVTETTS 897

[Close]

BLAST of Lsi06G011040 vs. NCBI nr
Match: KAA0063998.1 (glutamate receptor 2.2-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 35  EHSHLDEKDKEMDDVSKSSEVVSADSDHGCHDGSACLPKYV 76
           E SH D KDKEMDD+SKSSE VSAD+DHGCHDGSA   K+V
Sbjct: 786 EDSHSDVKDKEMDDMSKSSE-VSADADHGCHDGSAGPSKHV 825

[Close]

BLAST of Lsi06G011040 vs. NCBI nr
Match: TYK09473.1 (glutamate receptor 2.2-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 35  EHSHLDEKDKEMDDVSKSSEVVSADSDHGCHDGSACLPKYV 76
           E SH D KDKEMDD+SKSSE VSAD+DHGCHDGSA   K+V
Sbjct: 786 EDSHSDVKDKEMDDMSKSSE-VSADADHGCHDGSAGPSKHV 825

The following BLAST results are available for this feature:

BLAST of Lsi06G011040 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G011040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8Q7	5.4e-05	75.61	Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold117G0...	[more]
A0A5D3CC94	5.4e-05	75.61	Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G0...	[more]
A0A1S3BWV8	5.4e-05	75.61	Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103494304 PE=3 SV=1	[more]

BLAST of Lsi06G011040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880119.1	9.1e-07	75.56	glutamate receptor 2.2-like isoform X3 [Benincasa hispida]	[more]
XP_038880117.1	9.1e-07	75.56	glutamate receptor 2.2-like isoform X1 [Benincasa hispida]	[more]
XP_038880118.1	9.1e-07	75.56	glutamate receptor 2.2-like isoform X2 [Benincasa hispida]	[more]
KAA0063998.1	1.1e-04	75.61	glutamate receptor 2.2-like [Cucumis melo var. makuwa]	[more]
TYK09473.1	1.1e-04	75.61	glutamate receptor 2.2-like [Cucumis melo var. makuwa]	[more]

BLAST of Lsi06G011040 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G011040.1	Lsi06G011040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034220	ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015276	ligand-gated ion channel activity