Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAATCAAGTTCCTGGCTGTTGTTCTTTGCTTTTTACTCTCTTTTTCCGCCGTTCTCTCTGAAGGTCGAGTGGCGAGAAAGGATCTCGGCATTGACCTCGGAGGAGTCGGAGTTGGACTTGGAGCTGGAATTGGCTTAGGCTCAGGTGGAAGTGGTTCTGGCTCTGGCTCTGGCTCCGGATCTGGATCGAGTTCGTCTTCATCTTCATCATCATACTCTTCAAGCTCAAGCTCTGGGTCTGGAGCTGGGTCCGACGCTGGCTCATACGCAGGCTCGTATGCAGGGTCTCAGGCAGGCTCAGGTGGAAATAGGAATGGAGGGTTGGGGTCAGGTTCGGGATATGGCGAAGGTTCGGGCAAAGGAAGTGGCAATGGCGGTGGTGAAGGATATGGTGAAGGTCATGGCTATGGGGGAGGCAACTAA
mRNA sequence
ATGGCTTCAATCAAGTTCCTGGCTGTTGTTCTTTGCTTTTTACTCTCTTTTTCCGCCGTTCTCTCTGAAGGTCGAGTGGCGAGAAAGGATCTCGGCATTGACCTCGGAGGAGTCGGAGTTGGACTTGGAGCTGGAATTGGCTTAGGCTCAGGTGGAAGTGGTTCTGGCTCTGGCTCTGGCTCCGGATCTGGATCGAGTTCGTCTTCATCTTCATCATCATACTCTTCAAGCTCAAGCTCTGGGTCTGGAGCTGGGTCCGACGCTGGCTCATACGCAGGCTCGTATGCAGGGTCTCAGGCAGGCTCAGGTGGAAATAGGAATGGAGGGTTGGGGTCAGGTTCGGGATATGGCGAAGGTTCGGGCAAAGGAAGTGGCAATGGCGGTGGTGAAGGATATGGTGAAGGTCATGGCTATGGGGGAGGCAACTAA
Coding sequence (CDS)
ATGGCTTCAATCAAGTTCCTGGCTGTTGTTCTTTGCTTTTTACTCTCTTTTTCCGCCGTTCTCTCTGAAGGTCGAGTGGCGAGAAAGGATCTCGGCATTGACCTCGGAGGAGTCGGAGTTGGACTTGGAGCTGGAATTGGCTTAGGCTCAGGTGGAAGTGGTTCTGGCTCTGGCTCTGGCTCCGGATCTGGATCGAGTTCGTCTTCATCTTCATCATCATACTCTTCAAGCTCAAGCTCTGGGTCTGGAGCTGGGTCCGACGCTGGCTCATACGCAGGCTCGTATGCAGGGTCTCAGGCAGGCTCAGGTGGAAATAGGAATGGAGGGTTGGGGTCAGGTTCGGGATATGGCGAAGGTTCGGGCAAAGGAAGTGGCAATGGCGGTGGTGAAGGATATGGTGAAGGTCATGGCTATGGGGGAGGCAACTAA
Protein sequence
MASIKFLAVVLCFLLSFSAVLSEGRVARKDLGIDLGGVGVGLGAGIGLGSGGSGSGSGSGSGSGSSSSSSSSSYSSSSSSGSGAGSDAGSYAGSYAGSQAGSGGNRNGGLGSGSGYGEGSGKGSGNGGGEGYGEGHGYGGGN
Homology
BLAST of Lsi06G010970 vs. ExPASy TrEMBL
Match:
A0A1S3B9N0 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC103487316 PE=4 SV=1)
HSP 1 Score: 150.2 bits (378), Expect = 6.5e-33
Identity = 122/146 (83.56%), Postives = 129/146 (88.36%), Query Frame = 0
Query: 1 MASIKFLAVVLCFLLSFSAVLSEGRVARKDLGIDLGGVGVGLGAGIGLGSG--GSGSGSG 60
MASIK LA+V+C LLSFS LSEGRVARKDLGIDLGG+GVGLGAGIGLG G GSGSGSG
Sbjct: 1 MASIKSLALVVCLLLSFSVFLSEGRVARKDLGIDLGGLGVGLGAGIGLGIGGSGSGSGSG 60
Query: 61 SGSGSGSSSSSSSSSYSSSSSSGSGAGSDAGSYAGSYAGSQA--GSGGNRNGGLGSGSGY 120
SGSGSGS SSSSSSSYSSSSSSGSGAGS+AGSYAGSYAGS+A GSGGNRNGG G GSGY
Sbjct: 61 SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120
Query: 121 GEGSGKGSGNGGGEGYGEGHGYGGGN 143
G GSG+G NG GEGYGEGHGYG G+
Sbjct: 121 GGGSGRGGSNGNGEGYGEGHGYGEGH 146
BLAST of Lsi06G010970 vs. ExPASy TrEMBL
Match:
A0A0A0LTK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1)
HSP 1 Score: 148.7 bits (374), Expect = 1.9e-32
Identity = 123/146 (84.25%), Postives = 129/146 (88.36%), Query Frame = 0
Query: 1 MASIKFLAVVLCFLLSFSAVLSEGRVARKDLGIDLGGVGVGLGAGIGLGSG--GSGSGSG 60
MASIK LA+V+C LLSFSA+LSEGRVARKDLGIDLGGVGVGLG GIGLG G GSGSGSG
Sbjct: 1 MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60
Query: 61 SGSGSGSSSSSSSSSYSSSSSSGSGAGSDAGSYAGSYAGSQA--GSGGNRNGGLGSGSGY 120
SGSGSGS SSSSSSSYSSSSSSGSGAGS+AGSYAGSYAGS+A GSGGNRNGG G GSGY
Sbjct: 61 SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120
Query: 121 GEGSGKGSG-NGGGEGYGEGHGYGGG 142
G GSG+G G N GEGYGEGHGYG G
Sbjct: 121 GGGSGRGGGSNDNGEGYGEGHGYGEG 146
BLAST of Lsi06G010970 vs. ExPASy TrEMBL
Match:
A0A6J1E521 (putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1)
HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 117/145 (80.69%), Postives = 126/145 (86.90%), Query Frame = 0
Query: 1 MASIKFLAVVLCFLLSFSAVLSEGRVARKDLGIDLGGVGVGLGAGIGLGSG----GSGSG 60
MASI L +V+CFLLSFS +LS+ RVARKDLG+DLGG+GVG+G GIGLG G GSGSG
Sbjct: 1 MASINSL-IVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSG 60
Query: 61 SGSGSGSGSSSSSSSSSYSSSSSSGSGAGSDAGSYAGSYAGSQAGSGGNRNGGLGSGSGY 120
SGSGSGSGSSSSSSSSSYSSSS SGSGAGS+AGSYAGS AGS GSG NRNGG GSGSGY
Sbjct: 61 SGSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGS--GSGPNRNGGSGSGSGY 120
Query: 121 GEGSGKGSGNGGGEGYGEGHGYGGG 142
G GSG+GSGNGGGEGYGEGHGYG G
Sbjct: 121 GGGSGRGSGNGGGEGYGEGHGYGEG 142
BLAST of Lsi06G010970 vs. ExPASy TrEMBL
Match:
A0A6J1E2L1 (cell wall protein IFF6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1)
HSP 1 Score: 135.2 bits (339), Expect = 2.1e-28
Identity = 119/163 (73.01%), Postives = 129/163 (79.14%), Query Frame = 0
Query: 1 MASIKFLAVVLCFLLSFSAVLSEGRVARKDLGIDLGGVGVGLGAGIGLGSG----GSGSG 60
MASI L +V+CFLLSFS +LS+ RVARKDLG+DLGG+GVG+G GIGLG G GSGSG
Sbjct: 1 MASINSL-IVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSG 60
Query: 61 SGSGSGSGSSSSSSSSSYSSSSSSGSGAGSDAGSY----------------AGSYAGSQA 120
SGSGSGSGSSSSSSSSSYSSSS SGSGAGS+AGSY AGSYAGS+A
Sbjct: 61 SGSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGSGAGSEAGSYAGSRA 120
Query: 121 GSGG--NRNGGLGSGSGYGEGSGKGSGNGGGEGYGEGHGYGGG 142
GSG NRNGG GSGSGYG GSG+GSGNGGGEGYGEGHGYG G
Sbjct: 121 GSGSGPNRNGGSGSGSGYGGGSGRGSGNGGGEGYGEGHGYGEG 162
BLAST of Lsi06G010970 vs. ExPASy TrEMBL
Match:
A0A6J1C497 (putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LOC111007250 PE=4 SV=1)
HSP 1 Score: 129.8 bits (325), Expect = 9.0e-27
Identity = 113/145 (77.93%), Postives = 123/145 (84.83%), Query Frame = 0
Query: 1 MASIKFLAVVLCFLLSFSAVLSEGRVARKDLGIDLGGVGVGLGAGIGLGSG-GSGSGSGS 60
MA+I+ AVV L +A++SE RVARKDLGIDLGGVGVGLGAGIGLG G GSGSG+G+
Sbjct: 1 MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGA 60
Query: 61 GSGSGSSSSSSSSSYSSSSSSGSGAGSDAGSYAGSYAGSQAGSGGNRNGGLGSGSGYGEG 120
GSGSGS SSSSSSSYSSSSSSGSGAGS+AGSYAGSYAGS+AGSG N G GSGSGYG G
Sbjct: 61 GSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRGSGSGSGYGGG 120
Query: 121 SGKGSGNGGGE--GYGEGHGYGGGN 143
SG+GSG G GE GYGEGHGYGGGN
Sbjct: 121 SGRGSGEGYGEGHGYGEGHGYGGGN 145
BLAST of Lsi06G010970 vs. NCBI nr
Match:
XP_038879748.1 (glycine-rich cell wall structural protein 2-like [Benincasa hispida])
HSP 1 Score: 162.2 bits (409), Expect = 3.4e-36
Identity = 125/142 (88.03%), Postives = 132/142 (92.96%), Query Frame = 0
Query: 1 MASIKFLAVVLCFLLSFSAVLSEGRVARKDLGIDLGGVGVGLGAGIGLGSGGSGSGSGSG 60
MASIK LAVV+CFLLSFSA+LSEGRVARKDLGIDLGGVGVGLGAGIGLG GGSGSGSGSG
Sbjct: 1 MASIKSLAVVVCFLLSFSAILSEGRVARKDLGIDLGGVGVGLGAGIGLGLGGSGSGSGSG 60
Query: 61 SGSGSSSSSSSSSYSSSSSSGSGAGSDAGSYAGSYAGSQAGSGGNRNGGLGSGSGYGEGS 120
SGS SSSSS SS SSSSSSGSGAGS+AGSYAGSYAGS+AGSGGNRNGG GSG+GYG GS
Sbjct: 61 SGSSSSSSSYSS--SSSSSSGSGAGSEAGSYAGSYAGSRAGSGGNRNGGSGSGTGYGGGS 120
Query: 121 GKGSGNGGGEGYGEGHGYGGGN 143
G+G GNGGGEGYGEGHGYG G+
Sbjct: 121 GRGGGNGGGEGYGEGHGYGEGH 140
BLAST of Lsi06G010970 vs. NCBI nr
Match:
XP_008443813.1 (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])
HSP 1 Score: 150.2 bits (378), Expect = 1.3e-32
Identity = 122/146 (83.56%), Postives = 129/146 (88.36%), Query Frame = 0
Query: 1 MASIKFLAVVLCFLLSFSAVLSEGRVARKDLGIDLGGVGVGLGAGIGLGSG--GSGSGSG 60
MASIK LA+V+C LLSFS LSEGRVARKDLGIDLGG+GVGLGAGIGLG G GSGSGSG
Sbjct: 1 MASIKSLALVVCLLLSFSVFLSEGRVARKDLGIDLGGLGVGLGAGIGLGIGGSGSGSGSG 60
Query: 61 SGSGSGSSSSSSSSSYSSSSSSGSGAGSDAGSYAGSYAGSQA--GSGGNRNGGLGSGSGY 120
SGSGSGS SSSSSSSYSSSSSSGSGAGS+AGSYAGSYAGS+A GSGGNRNGG G GSGY
Sbjct: 61 SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120
Query: 121 GEGSGKGSGNGGGEGYGEGHGYGGGN 143
G GSG+G NG GEGYGEGHGYG G+
Sbjct: 121 GGGSGRGGSNGNGEGYGEGHGYGEGH 146
BLAST of Lsi06G010970 vs. NCBI nr
Match:
XP_004146660.2 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65265.1 hypothetical protein Csa_020101 [Cucumis sativus])
HSP 1 Score: 148.7 bits (374), Expect = 3.9e-32
Identity = 123/146 (84.25%), Postives = 129/146 (88.36%), Query Frame = 0
Query: 1 MASIKFLAVVLCFLLSFSAVLSEGRVARKDLGIDLGGVGVGLGAGIGLGSG--GSGSGSG 60
MASIK LA+V+C LLSFSA+LSEGRVARKDLGIDLGGVGVGLG GIGLG G GSGSGSG
Sbjct: 1 MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60
Query: 61 SGSGSGSSSSSSSSSYSSSSSSGSGAGSDAGSYAGSYAGSQA--GSGGNRNGGLGSGSGY 120
SGSGSGS SSSSSSSYSSSSSSGSGAGS+AGSYAGSYAGS+A GSGGNRNGG G GSGY
Sbjct: 61 SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120
Query: 121 GEGSGKGSG-NGGGEGYGEGHGYGGG 142
G GSG+G G N GEGYGEGHGYG G
Sbjct: 121 GGGSGRGGGSNDNGEGYGEGHGYGEG 146
BLAST of Lsi06G010970 vs. NCBI nr
Match:
KAG6589745.1 (hypothetical protein SDJN03_15168, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 139.8 bits (351), Expect = 1.8e-29
Identity = 118/159 (74.21%), Postives = 129/159 (81.13%), Query Frame = 0
Query: 1 MASIKFLAVVLCFLLSFSAVLSEGRVARKDLGIDLGGVGVGLGAGIGLGSGGSGSGSGSG 60
MASI L +V+CFLLSFS ++S+ RVARKDLG+DLGG+GVG+G GIGLG GGSGSGSGSG
Sbjct: 1 MASINSL-IVVCFLLSFSVIVSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSG 60
Query: 61 SGSGSSSSSSSSSYSSSSSSGSGAGSDAGSY----------------AGSYAGSQAGSGG 120
SGSGSSSSSSSSSYSSSS SGSGAGS+AGSY AGSYAGS+AGSG
Sbjct: 61 SGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGSGAGSEAGSYAGSRAGSGS 120
Query: 121 --NRNGGLGSGSGYGEGSGKGSGNGGGEGYGEGHGYGGG 142
NRNGG GSGSGYG GSG+GSGNGGGEGYGEGHGYG G
Sbjct: 121 GRNRNGGSGSGSGYGGGSGRGSGNGGGEGYGEGHGYGEG 158
BLAST of Lsi06G010970 vs. NCBI nr
Match:
XP_022921883.1 (putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita moschata])
HSP 1 Score: 139.4 bits (350), Expect = 2.4e-29
Identity = 117/145 (80.69%), Postives = 126/145 (86.90%), Query Frame = 0
Query: 1 MASIKFLAVVLCFLLSFSAVLSEGRVARKDLGIDLGGVGVGLGAGIGLGSG----GSGSG 60
MASI L +V+CFLLSFS +LS+ RVARKDLG+DLGG+GVG+G GIGLG G GSGSG
Sbjct: 1 MASINSL-IVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSG 60
Query: 61 SGSGSGSGSSSSSSSSSYSSSSSSGSGAGSDAGSYAGSYAGSQAGSGGNRNGGLGSGSGY 120
SGSGSGSGSSSSSSSSSYSSSS SGSGAGS+AGSYAGS AGS GSG NRNGG GSGSGY
Sbjct: 61 SGSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGS--GSGPNRNGGSGSGSGY 120
Query: 121 GEGSGKGSGNGGGEGYGEGHGYGGG 142
G GSG+GSGNGGGEGYGEGHGYG G
Sbjct: 121 GGGSGRGSGNGGGEGYGEGHGYGEG 142
BLAST of Lsi06G010970 vs. TAIR 10
Match:
AT4G30460.1 (glycine-rich protein )
HSP 1 Score: 87.8 bits (216), Expect = 7.6e-18
Identity = 91/146 (62.33%), Postives = 106/146 (72.60%), Query Frame = 0
Query: 9 VVLCFLLSFSAVLSEGRVARKDLGIDLGGVGVGLGAGIGLGSGGSGSGSGSGSGS-GSSS 68
+++ +L+ S ++SE RVARKDLG+DLGG+G G+G GIG+G GGSGSG+G+GSGS G S
Sbjct: 11 ILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGGGS 70
Query: 69 SSSSSSYSSSSSSGSGAGSDAGSYAGSYAGSQAGSG-GNRNG-----GLGSGSGYGEGSG 128
SSSSSS SSSSSS G G DAGS AGSYAGS AGSG G R+G G G G G+G G G
Sbjct: 71 SSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGGGG 130
Query: 129 KGSGNGG------GEGYGEGHGYGGG 142
G G GG GEGYGEG GYGGG
Sbjct: 131 GGGGRGGGGGSGNGEGYGEGGGYGGG 156
BLAST of Lsi06G010970 vs. TAIR 10
Match:
AT4G30450.1 (glycine-rich protein )
HSP 1 Score: 74.3 bits (181), Expect = 8.7e-14
Identity = 66/104 (63.46%), Postives = 83/104 (79.81%), Query Frame = 0
Query: 1 MASIKFLAVVLCFLLSFSAVLSEGRVARKDLGIDLGGVGVGLGAGIGLG-SGGSGSGSGS 60
MA + L ++ ++S +L+E R+ARKDLGIDLGG+G+GLG G+G+G GGSGSG+G+
Sbjct: 1 MAKAEGLFLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGA 60
Query: 61 GSGSGSSSSSSSSSYSSSSSSGSGAGSDAGSYAGSYAGSQAGSG 104
GSGSGS S SSSSS SSSSSS SG+G AGS AGS+AGS+AGSG
Sbjct: 61 GSGSGSGSRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSG 104
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S3B9N0 | 6.5e-33 | 83.56 | glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... | [more] |
| A0A0A0LTK9 | 1.9e-32 | 84.25 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1 | [more] |
| A0A6J1E521 | 1.1e-29 | 80.69 | putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita mos... | [more] |
| A0A6J1E2L1 | 2.1e-28 | 73.01 | cell wall protein IFF6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11143... | [more] |
| A0A6J1C497 | 9.0e-27 | 77.93 | putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_038879748.1 | 3.4e-36 | 88.03 | glycine-rich cell wall structural protein 2-like [Benincasa hispida] | [more] |
| XP_008443813.1 | 1.3e-32 | 83.56 | PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo] | [more] |
| XP_004146660.2 | 3.9e-32 | 84.25 | glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65265.1 hypoth... | [more] |
| KAG6589745.1 | 1.8e-29 | 74.21 | hypothetical protein SDJN03_15168, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022921883.1 | 2.4e-29 | 80.69 | putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita mosch... | [more] |
