Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCCATCAAAGCTATTTCTGTTCTTTGTTTAGTACTCTGTATGTCTGTGATTGAATCACAAGCAAGGCGTGTGGCCAGGAAGGACCTCGGCCTTGATCTTGGTGGCTTGGGAGCTGGCCTTGGCATTGGCTTGGGCTTGGGCTTAGGCGGTGGAAGTGGGTCGGGTGCTGGAGCCGGGTCTGGATCCGGATCCGGTTCTGGTTCCTATTCTTCTTCGTCGTCACACTCATCTAGCTCTAGCTATGGAGGCTCCGGCGCAGGCTCTGAAGCTGGTTCCTACGCTGGGTCTTACGCAGGGTCACGTGCTGGCTCAGGTTCCGGCAGAGGAAACGGCGGCGGAGAGGGTCATGGCTACGGCGAGGGACGTGGTTACGGTGAAGGTGGCAACAATTAA
mRNA sequence
ATGGCCTCCATCAAAGCTATTTCTGTTCTTTGTTTAGTACTCTGTATGTCTGTGATTGAATCACAAGCAAGGCGTGTGGCCAGGAAGGACCTCGGCCTTGATCTTGGTGGCTTGGGAGCTGGCCTTGGCATTGGCTTGGGCTTGGGCTTAGGCGGTGGAAGTGGGTCGGGTGCTGGAGCCGGGTCTGGATCCGGATCCGGTTCTGGTTCCTATTCTTCTTCGTCGTCACACTCATCTAGCTCTAGCTATGGAGGCTCCGGCGCAGGCTCTGAAGCTGGTTCCTACGCTGGGTCTTACGCAGGGTCACGTGCTGGCTCAGGTTCCGGCAGAGGAAACGGCGGCGGAGAGGGTCATGGCTACGGCGAGGGACGTGGTTACGGTGAAGGTGGCAACAATTAA
Coding sequence (CDS)
ATGGCCTCCATCAAAGCTATTTCTGTTCTTTGTTTAGTACTCTGTATGTCTGTGATTGAATCACAAGCAAGGCGTGTGGCCAGGAAGGACCTCGGCCTTGATCTTGGTGGCTTGGGAGCTGGCCTTGGCATTGGCTTGGGCTTGGGCTTAGGCGGTGGAAGTGGGTCGGGTGCTGGAGCCGGGTCTGGATCCGGATCCGGTTCTGGTTCCTATTCTTCTTCGTCGTCACACTCATCTAGCTCTAGCTATGGAGGCTCCGGCGCAGGCTCTGAAGCTGGTTCCTACGCTGGGTCTTACGCAGGGTCACGTGCTGGCTCAGGTTCCGGCAGAGGAAACGGCGGCGGAGAGGGTCATGGCTACGGCGAGGGACGTGGTTACGGTGAAGGTGGCAACAATTAA
Protein sequence
MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGRGNGGGEGHGYGEGRGYGEGGNN
Homology
BLAST of Lsi06G010960 vs. ExPASy TrEMBL
Match:
A0A0A0LW94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278490 PE=4 SV=1)
HSP 1 Score: 176.4 bits (446), Expect = 7.8e-41
Identity = 124/134 (92.54%), Postives = 127/134 (94.78%), Query Frame = 0
Query: 1 MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA 60
MASIKAI+VLCLVLCMSVIES+A RVARKDLGLDLGGLG GLG+GLGLGLGGGSGSGAGA
Sbjct: 1 MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGAGA 60
Query: 61 GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGRGNG--GGEGH 120
GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSG NG GGEGH
Sbjct: 61 GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASGGEGH 120
Query: 121 GYGEGRGYGEGGNN 133
GYGEG GYGEGGNN
Sbjct: 121 GYGEGHGYGEGGNN 134
BLAST of Lsi06G010960 vs. ExPASy TrEMBL
Match:
A0A5A7SV53 (Glycine-rich protein DOT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00240 PE=4 SV=1)
HSP 1 Score: 165.2 bits (417), Expect = 1.8e-37
Identity = 121/136 (88.97%), Postives = 125/136 (91.91%), Query Frame = 0
Query: 1 MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA 60
MASIKAI VLCLVLCMSVIES+A RVARK+LGLDLGGLG GLG+GLGLG+GGGSGSGAGA
Sbjct: 1 MASIKAIGVLCLVLCMSVIESEAGRVARKNLGLDLGGLGVGLGLGLGLGVGGGSGSGAGA 60
Query: 61 --GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGRGNG--GGE 120
GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGS R NG GGE
Sbjct: 61 GSGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSDRRNGASGGE 120
Query: 121 GHGYGEGRGYGEGGNN 133
HGYGEG GYGEGGNN
Sbjct: 121 AHGYGEGHGYGEGGNN 136
BLAST of Lsi06G010960 vs. ExPASy TrEMBL
Match:
A0A1S3B9P9 (glycine-rich protein DOT1-like OS=Cucumis melo OX=3656 GN=LOC103487317 PE=4 SV=1)
HSP 1 Score: 165.2 bits (417), Expect = 1.8e-37
Identity = 121/136 (88.97%), Postives = 125/136 (91.91%), Query Frame = 0
Query: 1 MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA 60
MASIKAI VLCLVLCMSVIES+A RVARK+LGLDLGGLG GLG+GLGLG+GGGSGSGAGA
Sbjct: 1 MASIKAIGVLCLVLCMSVIESEAGRVARKNLGLDLGGLGVGLGLGLGLGVGGGSGSGAGA 60
Query: 61 --GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGRGNG--GGE 120
GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGS R NG GGE
Sbjct: 61 GSGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSDRRNGASGGE 120
Query: 121 GHGYGEGRGYGEGGNN 133
HGYGEG GYGEGGNN
Sbjct: 121 AHGYGEGHGYGEGGNN 136
BLAST of Lsi06G010960 vs. ExPASy TrEMBL
Match:
A0A6J1E720 (glycine-rich protein DOT1-like OS=Cucurbita moschata OX=3662 GN=LOC111430016 PE=4 SV=1)
HSP 1 Score: 143.3 bits (360), Expect = 7.3e-31
Identity = 112/139 (80.58%), Postives = 119/139 (85.61%), Query Frame = 0
Query: 1 MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA 60
M SI+AI+VLC V+CMS IESQ RVARKDLGLDLGGLG GLG+GLGLGLGGGSGSG+G+
Sbjct: 1 MTSIRAIAVLCFVVCMSAIESQG-RVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGS 60
Query: 61 GSGSGSGSGSYSS--SSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGR-----GNG 120
GSGSGSGSGS S SSS SSSSSYGGSGAGSEAGSYAGSYAGSR GS SGR G+G
Sbjct: 61 GSGSGSGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGSG 120
Query: 121 GGEGHGYGEGRGYGEGGNN 133
GEG GYGEGRGYGEGGNN
Sbjct: 121 YGEGRGYGEGRGYGEGGNN 138
BLAST of Lsi06G010960 vs. ExPASy TrEMBL
Match:
A0A6J1C269 (glycine-rich cell wall structural protein 2-like OS=Momordica charantia OX=3673 GN=LOC111007265 PE=4 SV=1)
HSP 1 Score: 139.8 bits (351), Expect = 8.1e-30
Identity = 114/152 (75.00%), Postives = 121/152 (79.61%), Query Frame = 0
Query: 1 MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA 60
MASI+AI+ +C V+C IESQA RVARKDLGLDLGGLG GLG G+GLG+GGGSGSGAGA
Sbjct: 1 MASIRAIAFVCFVVCFCAIESQA-RVARKDLGLDLGGLGIGLGAGIGLGIGGGSGSGAGA 60
Query: 61 GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGS-------------- 120
GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGS AGS +GS
Sbjct: 61 GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSRAGSGSGSGRNYRNGGSGSGSG 120
Query: 121 ---GSGRGNGG--GEGHGYGEGRGY-GEGGNN 133
GSGRGNG GEGHGYGEGRGY GEGGNN
Sbjct: 121 YGEGSGRGNGEGYGEGHGYGEGRGYGGEGGNN 151
BLAST of Lsi06G010960 vs. NCBI nr
Match:
XP_038880102.1 (glycine-rich cell wall structural protein 2-like [Benincasa hispida])
HSP 1 Score: 181.0 bits (458), Expect = 6.6e-42
Identity = 126/134 (94.03%), Postives = 129/134 (96.27%), Query Frame = 0
Query: 1 MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA 60
MA+IKAI+VLCLVLCMSVIES A RVARKDLGLDLGGLG GLG+GLGLGLGGGSGSGAGA
Sbjct: 1 MATIKAIAVLCLVLCMSVIESGAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGAGA 60
Query: 61 GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGRGN--GGGEGH 120
GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGRGN GGGEGH
Sbjct: 61 GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGRGNGRGGGEGH 120
Query: 121 GYGEGRGYGEGGNN 133
GYGEGRGYGEGGNN
Sbjct: 121 GYGEGRGYGEGGNN 134
BLAST of Lsi06G010960 vs. NCBI nr
Match:
XP_011656027.1 (glycine-rich protein DOT1 [Cucumis sativus] >KGN65264.1 hypothetical protein Csa_020034 [Cucumis sativus])
HSP 1 Score: 176.4 bits (446), Expect = 1.6e-40
Identity = 124/134 (92.54%), Postives = 127/134 (94.78%), Query Frame = 0
Query: 1 MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA 60
MASIKAI+VLCLVLCMSVIES+A RVARKDLGLDLGGLG GLG+GLGLGLGGGSGSGAGA
Sbjct: 1 MASIKAIAVLCLVLCMSVIESEAGRVARKDLGLDLGGLGVGLGLGLGLGLGGGSGSGAGA 60
Query: 61 GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGRGNG--GGEGH 120
GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSG NG GGEGH
Sbjct: 61 GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGSRNGASGGEGH 120
Query: 121 GYGEGRGYGEGGNN 133
GYGEG GYGEGGNN
Sbjct: 121 GYGEGHGYGEGGNN 134
BLAST of Lsi06G010960 vs. NCBI nr
Match:
XP_008443814.1 (PREDICTED: glycine-rich protein DOT1-like [Cucumis melo] >KAA0035122.1 glycine-rich protein DOT1-like [Cucumis melo var. makuwa] >TYJ95958.1 glycine-rich protein DOT1-like [Cucumis melo var. makuwa])
HSP 1 Score: 165.2 bits (417), Expect = 3.7e-37
Identity = 121/136 (88.97%), Postives = 125/136 (91.91%), Query Frame = 0
Query: 1 MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA 60
MASIKAI VLCLVLCMSVIES+A RVARK+LGLDLGGLG GLG+GLGLG+GGGSGSGAGA
Sbjct: 1 MASIKAIGVLCLVLCMSVIESEAGRVARKNLGLDLGGLGVGLGLGLGLGVGGGSGSGAGA 60
Query: 61 --GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGRGNG--GGE 120
GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGS R NG GGE
Sbjct: 61 GSGSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSDRRNGASGGE 120
Query: 121 GHGYGEGRGYGEGGNN 133
HGYGEG GYGEGGNN
Sbjct: 121 AHGYGEGHGYGEGGNN 136
BLAST of Lsi06G010960 vs. NCBI nr
Match:
XP_022921885.1 (glycine-rich protein DOT1-like [Cucurbita moschata])
HSP 1 Score: 143.3 bits (360), Expect = 1.5e-30
Identity = 112/139 (80.58%), Postives = 119/139 (85.61%), Query Frame = 0
Query: 1 MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA 60
M SI+AI+VLC V+CMS IESQ RVARKDLGLDLGGLG GLG+GLGLGLGGGSGSG+G+
Sbjct: 1 MTSIRAIAVLCFVVCMSAIESQG-RVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGS 60
Query: 61 GSGSGSGSGSYSS--SSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGR-----GNG 120
GSGSGSGSGS S SSS SSSSSYGGSGAGSEAGSYAGSYAGSR GS SGR G+G
Sbjct: 61 GSGSGSGSGSGSGSYSSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGSG 120
Query: 121 GGEGHGYGEGRGYGEGGNN 133
GEG GYGEGRGYGEGGNN
Sbjct: 121 YGEGRGYGEGRGYGEGGNN 138
BLAST of Lsi06G010960 vs. NCBI nr
Match:
XP_023515820.1 (putative glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 140.2 bits (352), Expect = 1.3e-29
Identity = 108/140 (77.14%), Postives = 115/140 (82.14%), Query Frame = 0
Query: 1 MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA 60
M SI++I+VLC V+CMS IESQ RVARKDLGLDLGGLG GLG+GLGLGLGGGSGSG+G+
Sbjct: 1 MTSIRSIAVLCFVVCMSAIESQG-RVARKDLGLDLGGLGVGLGVGLGLGLGGGSGSGSGS 60
Query: 61 GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSGR---------- 120
GSGSGSGSGSY SSS SSSSSYGGSGAGSEAGSYAGSYAGSR GS SGR
Sbjct: 61 GSGSGSGSGSY--SSSQSSSSSYGGSGAGSEAGSYAGSYAGSRGGSDSGRNYRNGGSGYG 120
Query: 121 -GNGGGEGHGYGEGRGYGEG 130
G GGG G GYGEGRGYGEG
Sbjct: 121 GGGGGGRGEGYGEGRGYGEG 137
BLAST of Lsi06G010960 vs. TAIR 10
Match:
AT4G30460.1 (glycine-rich protein )
HSP 1 Score: 94.0 bits (232), Expect = 9.8e-20
Identity = 89/131 (67.94%), Postives = 104/131 (79.39%), Query Frame = 0
Query: 6 AISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGAGSGSG 65
++ ++ L+L SV+ S++ RVARKDLGLDLGG+GAG+GIG+G+G GGGSGSGAGAGSGSG
Sbjct: 9 SLILITLILATSVLVSES-RVARKDLGLDLGGIGAGIGIGIGIG-GGGSGSGAGAGSGSG 68
Query: 66 SGSGSYSSSSSHSSSSSYGGSG--AGSEAGSYAGSYAGS----RAGSGSGRGNGGGEGHG 125
G S SSSSS SSSSS GG G AGSEAGSYAGS+AGS R+GSG GRG+GGG GHG
Sbjct: 69 GGGSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHG 128
Query: 126 YGEGRGYGEGG 131
G G G G GG
Sbjct: 129 GGGGGGGGRGG 137
BLAST of Lsi06G010960 vs. TAIR 10
Match:
AT4G30450.1 (glycine-rich protein )
HSP 1 Score: 88.6 bits (218), Expect = 4.1e-18
Identity = 74/109 (67.89%), Postives = 87/109 (79.82%), Query Frame = 0
Query: 1 MASIKAISVLCLVLCMSVIESQARRVARKDLGLDLGGLGAGLGIGLGLGLGGGSGSGAGA 60
MA + + +L LV+ S++ R+ARKDLG+DLGG+G GLG+GLG+GLGGGSGSGAGA
Sbjct: 1 MAKAEGLFLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGA 60
Query: 61 GSGSGSGSGSYSSSSSHSSSSSYGGSGAGSEAGSYAGSYAGSRAGSGSG 110
GSGSGSGS S SSSSS SSSSS SG+G AGS AGS+AGSRAGSGSG
Sbjct: 61 GSGSGSGSRSSSSSSSSSSSSS---SGSGGSAGSSAGSFAGSRAGSGSG 106
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LW94 | 7.8e-41 | 92.54 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278490 PE=4 SV=1 | [more] |
| A0A5A7SV53 | 1.8e-37 | 88.97 | Glycine-rich protein DOT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
| A0A1S3B9P9 | 1.8e-37 | 88.97 | glycine-rich protein DOT1-like OS=Cucumis melo OX=3656 GN=LOC103487317 PE=4 SV=1 | [more] |
| A0A6J1E720 | 7.3e-31 | 80.58 | glycine-rich protein DOT1-like OS=Cucurbita moschata OX=3662 GN=LOC111430016 PE=... | [more] |
| A0A6J1C269 | 8.1e-30 | 75.00 | glycine-rich cell wall structural protein 2-like OS=Momordica charantia OX=3673 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_038880102.1 | 6.6e-42 | 94.03 | glycine-rich cell wall structural protein 2-like [Benincasa hispida] | [more] |
| XP_011656027.1 | 1.6e-40 | 92.54 | glycine-rich protein DOT1 [Cucumis sativus] >KGN65264.1 hypothetical protein Csa... | [more] |
| XP_008443814.1 | 3.7e-37 | 88.97 | PREDICTED: glycine-rich protein DOT1-like [Cucumis melo] >KAA0035122.1 glycine-r... | [more] |
| XP_022921885.1 | 1.5e-30 | 80.58 | glycine-rich protein DOT1-like [Cucurbita moschata] | [more] |
| XP_023515820.1 | 1.3e-29 | 77.14 | putative glycine-rich cell wall structural protein 1 [Cucurbita pepo subsp. pepo... | [more] |
