Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTGTTTCAAATCCTTGGTTCTTGCTGCTCTGCTTGTTTCGTCTCTTTTTGTTTTATCCCACAGCCGAGTTGCCAGGAAAGACTTGGGCATTGACTTGGGTGGGGTAGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTCGGTGGAAGTGGTTCGGGCTCGGGTTCTGGTTCTGGCTCTGGCTCTGGCTCTGGATCAAGTTCGAGTTCTAGCTCTAGCTCTTCTTCTTCTGGGTCGGGTTCTGACTCTGGATCTGAAGCAGGCTCGTATGCTGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGAGAAGGTGGAGGGTCGGGCTATGGTGGAGGATATGGATCGGGTTATGGAGGAGGACATGGAAAATGA
mRNA sequence
ATGAGTTGTTTCAAATCCTTGGTTCTTGCTGCTCTGCTTGTTTCGTCTCTTTTTGTTTTATCCCACAGCCGAGTTGCCAGGAAAGACTTGGGCATTGACTTGGGTGGGGTAGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTCGGTGGAAGTGGTTCGGGCTCGGGTTCTGGTTCTGGCTCTGGCTCTGGCTCTGGATCAAGTTCGAGTTCTAGCTCTAGCTCTTCTTCTTCTGGGTCGGGTTCTGACTCTGGATCTGAAGCAGGCTCGTATGCTGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGAGAAGGTGGAGGGTCGGGCTATGGTGGAGGATATGGATCGGGTTATGGAGGAGGACATGGAAAATGA
Coding sequence (CDS)
ATGAGTTGTTTCAAATCCTTGGTTCTTGCTGCTCTGCTTGTTTCGTCTCTTTTTGTTTTATCCCACAGCCGAGTTGCCAGGAAAGACTTGGGCATTGACTTGGGTGGGGTAGGCGTTGGGATTGGAGCTGGAATTGGCATTGGACTCGGTGGAAGTGGTTCGGGCTCGGGTTCTGGTTCTGGCTCTGGCTCTGGCTCTGGATCAAGTTCGAGTTCTAGCTCTAGCTCTTCTTCTTCTGGGTCGGGTTCTGACTCTGGATCTGAAGCAGGCTCGTATGCTGGGTCTCGAGCAGGTTCTGGATCGGGTGGTCGAGAAGGTGGAGGGTCGGGCTATGGTGGAGGATATGGATCGGGTTATGGAGGAGGACATGGAAAATGA
Protein sequence
MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYGGGHGK
Homology
BLAST of Lsi06G010950 vs. ExPASy TrEMBL
Match:
A0A6J1E2L6 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430017 PE=4 SV=1)
HSP 1 Score: 146.4 bits (368), Expect = 8.2e-32
Identity = 113/125 (90.40%), Postives = 118/125 (94.40%), Query Frame = 0
Query: 1 MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M +KSL+LAA+LVSSL V+S SRVARKDLG+DLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
Query: 61 GSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYG 120
GSGS S SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR GGGSGYGGGYGSGYG
Sbjct: 61 GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 120
Query: 121 GGHGK 126
GGHGK
Sbjct: 121 GGHGK 125
BLAST of Lsi06G010950 vs. ExPASy TrEMBL
Match:
A0A6J1JMR8 (glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111485795 PE=4 SV=1)
HSP 1 Score: 144.1 bits (362), Expect = 4.1e-31
Identity = 113/125 (90.40%), Postives = 116/125 (92.80%), Query Frame = 0
Query: 1 MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M KSLVLAA+LVSSL V+S SRVARKDLG+DLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1 MGRLKSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
Query: 61 GSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYG 120
GSGS S SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGG GGGSGYGGGYGSGYG
Sbjct: 61 GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGSGGGGSGYGGGYGSGYG 120
Query: 121 GGHGK 126
GGHGK
Sbjct: 121 GGHGK 125
BLAST of Lsi06G010950 vs. ExPASy TrEMBL
Match:
A0A5A7T0K2 (Glycine-rich cell wall structural protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002000 PE=4 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 1.5e-30
Identity = 112/127 (88.19%), Postives = 117/127 (92.13%), Query Frame = 0
Query: 1 MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M KSLVLAALLVSS FV+S SRVARKDLG+DLGGVG+G+G GIGIGLGGSGSGSGSGS
Sbjct: 1 MGSLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLGGSGSGSGSGS 60
Query: 61 GSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR--EGGGSGYGGGYGSG 120
GSGSGS SSSSSSSSSSSSGSGS+SGSEAGSYAGSRAGSGS GR EGGGSGYGGGYGSG
Sbjct: 61 GSGSGSSSSSSSSSSSSSSGSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGGYGSG 120
Query: 121 YGGGHGK 126
YGGGHGK
Sbjct: 121 YGGGHGK 127
BLAST of Lsi06G010950 vs. ExPASy TrEMBL
Match:
A0A1S4DUX4 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC107990650 PE=4 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 1.5e-30
Identity = 112/127 (88.19%), Postives = 117/127 (92.13%), Query Frame = 0
Query: 1 MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M KSLVLAALLVSS FV+S SRVARKDLG+DLGGVG+G+G GIGIGLGGSGSGSGSGS
Sbjct: 1 MGSLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLGGSGSGSGSGS 60
Query: 61 GSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR--EGGGSGYGGGYGSG 120
GSGSGS SSSSSSSSSSSSGSGS+SGSEAGSYAGSRAGSGS GR EGGGSGYGGGYGSG
Sbjct: 61 GSGSGSSSSSSSSSSSSSSGSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGGYGSG 120
Query: 121 YGGGHGK 126
YGGGHGK
Sbjct: 121 YGGGHGK 127
BLAST of Lsi06G010950 vs. ExPASy TrEMBL
Match:
A0A0A0LWP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1)
HSP 1 Score: 137.5 bits (345), Expect = 3.8e-29
Identity = 112/128 (87.50%), Postives = 118/128 (92.19%), Query Frame = 0
Query: 1 MSCFKSLVLAALLVSSLFVL-SHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSG 60
M KSLVLAALLVSSLFV+ S SRVARKDLG+DLGGVG+G+GAG+GIGLGGSGSG+GSG
Sbjct: 1 MGSLKSLVLAALLVSSLFVVSSQSRVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGSG 60
Query: 61 SGSGSG--SGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGS 120
SGSGSG S SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR G GSGYGGGYGS
Sbjct: 61 SGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGEGSGYGGGYGS 120
Query: 121 GYGGGHGK 126
GYGGGHGK
Sbjct: 121 GYGGGHGK 128
BLAST of Lsi06G010950 vs. NCBI nr
Match:
XP_022921886.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata])
HSP 1 Score: 146.4 bits (368), Expect = 1.7e-31
Identity = 113/125 (90.40%), Postives = 118/125 (94.40%), Query Frame = 0
Query: 1 MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M +KSL+LAA+LVSSL V+S SRVARKDLG+DLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
Query: 61 GSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYG 120
GSGS S SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR GGGSGYGGGYGSGYG
Sbjct: 61 GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 120
Query: 121 GGHGK 126
GGHGK
Sbjct: 121 GGHGK 125
BLAST of Lsi06G010950 vs. NCBI nr
Match:
XP_038879831.1 (glycine-rich cell wall structural protein 2 [Benincasa hispida])
HSP 1 Score: 146.4 bits (368), Expect = 1.7e-31
Identity = 116/127 (91.34%), Postives = 118/127 (92.91%), Query Frame = 0
Query: 1 MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M KSLVLAALLVSSLFV+SHSRVARKDLG+DLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1 MGSLKSLVLAALLVSSLFVVSHSRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
Query: 61 GSGSGSG--SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSG 120
GSGSGSG SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGG GGGSGYGGGYG G
Sbjct: 61 GSGSGSGSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGHGGGGSGYGGGYGGG 120
Query: 121 YGGGHGK 126
YGGGH K
Sbjct: 121 YGGGHRK 127
BLAST of Lsi06G010950 vs. NCBI nr
Match:
XP_022988598.1 (glycine-rich cell wall structural protein 2-like [Cucurbita maxima])
HSP 1 Score: 144.1 bits (362), Expect = 8.4e-31
Identity = 113/125 (90.40%), Postives = 116/125 (92.80%), Query Frame = 0
Query: 1 MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M KSLVLAA+LVSSL V+S SRVARKDLG+DLGGVGVGIGAGIGIGLGGSGSGSGSGS
Sbjct: 1 MGRLKSLVLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
Query: 61 GSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYG 120
GSGS S SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGG GGGSGYGGGYGSGYG
Sbjct: 61 GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGSGGGGSGYGGGYGSGYG 120
Query: 121 GGHGK 126
GGHGK
Sbjct: 121 GGHGK 125
BLAST of Lsi06G010950 vs. NCBI nr
Match:
XP_016899784.1 (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo] >KAA0035121.1 glycine-rich cell wall structural protein 2-like [Cucumis melo var. makuwa])
HSP 1 Score: 142.1 bits (357), Expect = 3.2e-30
Identity = 112/127 (88.19%), Postives = 117/127 (92.13%), Query Frame = 0
Query: 1 MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M KSLVLAALLVSS FV+S SRVARKDLG+DLGGVG+G+G GIGIGLGGSGSGSGSGS
Sbjct: 1 MGSLKSLVLAALLVSSFFVVSQSRVARKDLGLDLGGVGIGVGTGIGIGLGGSGSGSGSGS 60
Query: 61 GSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR--EGGGSGYGGGYGSG 120
GSGSGS SSSSSSSSSSSSGSGS+SGSEAGSYAGSRAGSGS GR EGGGSGYGGGYGSG
Sbjct: 61 GSGSGSSSSSSSSSSSSSSGSGSNSGSEAGSYAGSRAGSGSSGRGGEGGGSGYGGGYGSG 120
Query: 121 YGGGHGK 126
YGGGHGK
Sbjct: 121 YGGGHGK 127
BLAST of Lsi06G010950 vs. NCBI nr
Match:
XP_023515822.1 (counting factor 45-1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 139.0 bits (349), Expect = 2.7e-29
Identity = 111/125 (88.80%), Postives = 116/125 (92.80%), Query Frame = 0
Query: 1 MSCFKSLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGS 60
M +KSL+LAA+LVSSL V+S SRVARKDLG+DLGGVGVGIGAGIGIGLG GSGSGSGS
Sbjct: 1 MGSWKSLLLAAMLVSSLLVVSESRVARKDLGLDLGGVGVGIGAGIGIGLG--GSGSGSGS 60
Query: 61 GSGSGSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYG 120
GSGS S SSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR GGGSGYGGGYGSGYG
Sbjct: 61 GSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYGSGYG 120
Query: 121 GGHGK 126
GGHGK
Sbjct: 121 GGHGK 123
BLAST of Lsi06G010950 vs. TAIR 10
Match:
AT4G30460.1 (glycine-rich protein )
HSP 1 Score: 89.0 bits (219), Expect = 3.0e-18
Identity = 84/122 (68.85%), Postives = 97/122 (79.51%), Query Frame = 0
Query: 6 SLVLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLGGSGSGSGSGSGSGSG 65
SL+L L++++ ++S SRVARKDLG+DLGG+G GIG GIGIG GGSGSG+G+GSGSG G
Sbjct: 9 SLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGG 68
Query: 66 ---SGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGREGGGSGYGGGYGSGYGGG 125
S SSSSSSSSSSS G G D+GSEAGSYAGS AGSGSGGR G G G G G G G+GGG
Sbjct: 69 GSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGG 128
BLAST of Lsi06G010950 vs. TAIR 10
Match:
AT4G30450.1 (glycine-rich protein )
HSP 1 Score: 83.6 bits (205), Expect = 1.3e-16
Identity = 70/98 (71.43%), Postives = 85/98 (86.73%), Query Frame = 0
Query: 8 VLAALLVSSLFVLSHSRVARKDLGIDLGGVGVGIGAGIGIGLG---GSGSGSGSGSGSGS 67
+L +++SSL +L+ SR+ARKDLGIDLGG+G+G+G G+GIGLG GSG+G+GSGSGSGS
Sbjct: 9 LLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSGS 68
Query: 68 GSGSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSG 103
S SSSSSSSSSSSSGSG +GS AGS+AGSRAGSGSG
Sbjct: 69 RSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1E2L6 | 8.2e-32 | 90.40 | glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... | [more] |
| A0A6J1JMR8 | 4.1e-31 | 90.40 | glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=... | [more] |
| A0A5A7T0K2 | 1.5e-30 | 88.19 | Glycine-rich cell wall structural protein 2-like OS=Cucumis melo var. makuwa OX=... | [more] |
| A0A1S4DUX4 | 1.5e-30 | 88.19 | glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... | [more] |
| A0A0A0LWP0 | 3.8e-29 | 87.50 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G277980 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_022921886.1 | 1.7e-31 | 90.40 | glycine-rich cell wall structural protein 2-like [Cucurbita moschata] | [more] |
| XP_038879831.1 | 1.7e-31 | 91.34 | glycine-rich cell wall structural protein 2 [Benincasa hispida] | [more] |
| XP_022988598.1 | 8.4e-31 | 90.40 | glycine-rich cell wall structural protein 2-like [Cucurbita maxima] | [more] |
| XP_016899784.1 | 3.2e-30 | 88.19 | PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo] >KAA0... | [more] |
| XP_023515822.1 | 2.7e-29 | 88.80 | counting factor 45-1-like [Cucurbita pepo subsp. pepo] | [more] |
