Lsi06G010360 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G010360
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr06: 20505108 .. 20509338 (-)
RNA-Seq ExpressionLsi06G010360
SyntenyLsi06G010360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGGTATATCCAAAATCAGATCTACGTCTCCAAATAGAAATCCTCTCCTCACCTGTGTCTTCAGCCTAACCTCCCGCAAGCATAGCATAGTATTAAATTTTCATTGATATGTCGAAATTTCTATCGAAATTTCTATGTTTTCATGGGTTCGATATCAATATGAGGGGTGAATCGATATTTCCATTATATCGTAGAAAAATTCATGAAATACGAAAAATAAGCATCAAAATACCACTTATATAAATATAATATAAATAATAGATTTGTTTACTTATTTGAAAATAATAAACATGTTTATTTACTAATTCAAATTTAACTTTTAAATTTTTTGTTTTTATAATTTTTTTCAGAAATATCCATCGAAATCGATATTTTATCGATATTTCCATCGAATTTTTGATAAAATTAAGATCTCGATATTTTCATCGACAGCGATATTTTAAACATTACCCATCAATGATGTCACTGACTCCTCCTTTAGCAACTCATGCACCCAAAGTGGAGTACCCTTCGCCACCCCTAGTATACAAGGGTCGTCTCAAATACTAATAAAATGGTCATTACCCAAGCGATTGTTAAGCTCTTTTTTTTTTTTTTAAACAATTTTGTTCTTGAAAATTATGTCTTAGTTTCTCTCCCTATTTAATTTCTTTAATTACTATTAATTTCTTTTTTTTTTTTTAAGATAGCATTTGAAATTTATAGTCAAATTCTAAAAACAAAACAAAGCTTTTAAAACTAATTTTCTAGTCTTCAAAATTTAGCTTAAATTTTGAAGGAAAAAAACTGAGAAAGTAGATAATAAAACATTAAAATTTATAAGTTAAATAGTGTTAATAAGTTAACTTTGAAAATAAACAATCATAAAAAATCAATTCGTTGTTAAACCAGGCTTAAATTTTCAATTTAAATTTTATACTTTATGAGCCTAACTTTAATTTGGTTACTGTAATTTTTATTCTTCAAAATACTTAAATACCTAGATTGGTGATGTTATTAATGGTGACCCTTTTGTTTCATTACCATATGAAATTATTTTTCCAAAAAAGAAAAAAAATACTTAAAAAGCTATTTCTACAATTTAGATTCCATAGAATATTTTGTTCCACTATGACTTTTATGCCCTTTAACAGTTTAAAAAGAAAGTTTTTACAAATTTGGTATCTCCATCTCTCCATGAACAACATATGGTAATTAAAATCTGAATCCATCAAATATCTTTTTCACATTTGCTTTTTTTAGTAAGAGACATAATTTTGTTCTGTTAGTCTACGTTTTATTTACATAAAATAGTAAAATTTTTAGATAGTTATGATAGATGCGGATAGAAGTCTATCAAGGTCTATCAATAATAAAAATGATAGAAGTCGATCATTGTAGATGCTGATAGAAGTCTATCAATGTCTATCAATGTCTATCAATGTATTTTTTTTCTATTTTTTATAAATAGTTTGAAATTTTTTTATTTGTAAAAATTTTACTATTTATTATTATTATTATTATTATTATTATTATTATAACTTCAAGCACTACTTAGGATCCGACGTTTACTTCAAAAAGTTAGAGAGGAAATACATGAGATTGAAAACTTTCATTCATTTTGATAGTGTTTACTAAAATGCAATAATAAAAGGAAGGAAAAAAATATGTCTTTCGAGATTTCAAAATATATATTTTTATTTCTCAACTTTTAAAAGATTCTATTTGGTCTTTGGATTTTCAAAGGTTAATTTTTATTCTTTAGTTTTGAGTTTAATTTTCATTTGCTTCCTCAATTTTAATATTTTAATTTTTATTCTCGATTTTTCACAAATGTTCACGTTAGGTCTTTGATATTAATTTTTAATTAATTAATTTAAAATAATTACAATGTGAATTTTTTTTAATTAATTTTAGTAAAGATTGAAAGTTAATGAAAACAAATTTAATTATAAGTATTTTTAATTAATTAATATACAATAACACAAAGAACTAAAAGTATGGTGAAGAATTAAGCGTAAAAGTGTAAATCTTGAGACCTAGAAACGAAATGGAAACAAATTTCAAACTCAAGGGCAAAATAAGCATCTTGAAACCTATGTATCAAATGAAAACTAGCTAGACTTAAAACCTAGGGACCAAAAAAATGAACATAGTTGAACATAAAGTTTGTACTATCCTCGAGGTTAGATGTTCGATTCTCTCATCCACATATATTGTAATTAAAAAAAAAAGGTTTTCTACACATATAACTTAATTAAATAGGCACAATAACAAAAATGTCTTAGACTCCTTATTTTTTTCTTAAATAGCCTAATGAGATGAAATATTACATAAAATCTGGCCCAAATGTCTATATCACCCTCCACAAATTTCAGACAATTGGAAAAAAATATTAATAAAAAAAAGAAATACGAAAAAGATACATATGGAAAAAAATATACCATATTCATGTGCCTTAAATACTTTTTTCAAAACTGTTTTATTTTCAAAACCAAACACAAAAGGAAGTTTTCCTTCATTTGCGAAATTATTCACACATTCAACCAAAATCAATGATTGATGAAGGTTTCAAACAACTTGTTGTTAGGTATATCCAACACAAAACTTAGAACGTCGACAAGGAGAAACTTCTTCAACTGGTAAGGTTTTGAACAACTTGTTGGGTATATTTGGAAACAAAACCCTTATGTCTTCGGTATATTTGACAATCCCTCCTAATTTGTTACCCATTCAAGAATCAAAACTTGGCGTTGGAATTCCCCAAACTTCTACGGCATAGGCAACGTCTAACCCCATCCGTCAGCACATCTTGTTTATATGGGATTTATTTTTACATTTTTGTTTCATTTTCAATTATATATGGGTTTTATTTCAAATAATATGAGGATGTCATCTATCATAGTTTATGTACATGTACATTTATGACAAAGTATGTGGAATATATATCTCAATTTAAAATATATACATATGTATATATGACAAAATATGTGGTATATATATATATATATATATATATATATATATATATATATATATATATATATATCTCAAAATAAACCAGACTCAAATTAAAATATGGAGAACAACCTTAAATCTATACTTGTTCTAAATACATTTGGAATTAATCTTATATATATTTGAAATATAGTTTGGTATATATTTGAACAAACCTCAGATATATACATAAGAAACGAATCACAAATAACATCAAAGATTTGCAATCATAATTTTACATTAAATGCAATCTACCCAATTTGGAAATTTTGAATTTTAAATCAAAATTCCAAAATATGTATAAAAAAATGGGGACTTTTCATAAATAGAAAAAAAATAAAAGTAATTACACATATAGAAAAAAAAGTGGGAAATACAAAAGCATGGGGTGCACTTTTTTCTATATGTATAATTACTTTTGTTTTTTTTCTATACACAACAATTTACCTAAAAAAATTGTAAATAGCTAGAAAACAATATCCTTCAGAAAAAAAAACTCCTAAAATCATGGATACGATACTATGACAAATTTTGCATTAATTGAATATAAAACAAATTTAATAAATGCCACTTTAAAAGTCAAAATTTGGATTGACAAGAATAAGGAAACAAAATAATATTACAAACTTTCAAAAAAAAAAAAATGAAAAAGGTTAATTTTGTCTAAAATTGTGAGTAAATGATCTTAATGAAATAATTCAAACTTATAAGACACTTATGAAATATAAGGTGTAGAGTTTTCGCGTAAAAGTTTTAAAAAAATCAAATTCTAGCATACATCAATAAGAGTTGTTGCTTTCTATTGCCATAAAAGAAAGGTGAACTCCATAACTACCCCTATATAAGAACCTCCACTGATAACAACTTTCTTACACAAACAAAACAAAACTTCTATCATTCTCACCTTCCCAATAATTATTTTTTTTACAAATTAAAGAATGGCGGTCAAGTCACTGAATGCATCCACAATGACGTTAACATTTGTATTCCTTGTCTGCATGGTTATTTTAGCACCATCAACGATGGCTGTAGTGCCATATCCATCAGTGCCACAAAATTTTCCTTTCTCTAGTTGTGTTCCATTTATTTTGGATGCGACATTGTGTGTGGTAGATGTGATCAAGTTTCCAATTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTTGAAGCTTAATGACTGTGCTCCTCAAATTTTCCAAAAGATTCCTCCTGCTGACATGGACGTGATTAAGAAGATTTGTGCTTTATAA

mRNA sequence

ATGCAAAGAATGGCGGTCAAGTCACTGAATGCATCCACAATGACGTTAACATTTGTATTCCTTGTCTGCATGGTTATTTTAGCACCATCAACGATGGCTGTAGTGCCATATCCATCAGTGCCACAAAATTTTCCTTTCTCTAGTTGTGTTCCATTTATTTTGGATGCGACATTGTGTGTGGTAGATGTGATCAAGTTTCCAATTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTTGAAGCTTAATGACTGTGCTCCTCAAATTTTCCAAAAGATTCCTCCTGCTGACATGGACGTGATTAAGAAGATTTGTGCTTTATAA

Coding sequence (CDS)

ATGCAAAGAATGGCGGTCAAGTCACTGAATGCATCCACAATGACGTTAACATTTGTATTCCTTGTCTGCATGGTTATTTTAGCACCATCAACGATGGCTGTAGTGCCATATCCATCAGTGCCACAAAATTTTCCTTTCTCTAGTTGTGTTCCATTTATTTTGGATGCGACATTGTGTGTGGTAGATGTGATCAAGTTTCCAATTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTTGAAGCTTAATGACTGTGCTCCTCAAATTTTCCAAAAGATTCCTCCTGCTGACATGGACGTGATTAAGAAGATTTGTGCTTTATAA

Protein sequence

MQRMAVKSLNASTMTLTFVFLVCMVILAPSTMAVVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL
Homology
[Close]
BLAST of Lsi06G010360 vs. ExPASy TrEMBL
Match: A0A5A7U9A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00160 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 79/108 (73.15%), Postives = 85/108 (78.70%), Query Frame = 0 

Query: 4   MAVKSLNASTMTLTFVFLVCMVILAPS-----TMAVVPYPSVPQNFPFSSCVPFILDATL 63
           MA +SLN S M L  VFLVC+ ILAPS     T A  P PSVPQNFPF  C PFIL+ATL
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 64  CVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL 107
           CV DVIKFPIAPHPSCCKAI KLNDCAP+I+QKIP  DMDVIKKIC+L
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

[Close]
BLAST of Lsi06G010360 vs. ExPASy TrEMBL
Match: A0A5D3CGK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00080 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.2e-29
Identity = 69/98 (70.41%), Postives = 75/98 (76.53%), Query Frame = 0 

Query: 14  MTLTFVFLVCMVILAPS-----TMAVVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPI 73
           M L  VFLVC+ ILAPS     T A  P PSVPQNFPF  C PFIL+ATLCV  VIKFPI
Sbjct: 1   MKLVLVFLVCIAILAPSTTMAGTTAAAPSPSVPQNFPFLKCAPFILEATLCVTGVIKFPI 60

Query: 74  APHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL 107
           APHPSCCKAI KL DCAP I+QKIP +DM+VIKK C+L
Sbjct: 61  APHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTCSL 98

[Close]
BLAST of Lsi06G010360 vs. ExPASy TrEMBL
Match: A0A5A7U2L3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00060 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.5e-26
Identity = 68/108 (62.96%), Postives = 75/108 (69.44%), Query Frame = 0 

Query: 4   MAVKSLNASTMTLTFVFLVCMVILAPSTMA------VVPYPSVPQNFPFSSCVPFILDAT 63
           MAVKSL AS +    VF+V + ILA S  A          PS+ QN  F SC PFI D T
Sbjct: 1   MAVKSLKASPIKSASVFIVSIAILAASVTAGRTVSSTTLDPSMSQNLSFFSCAPFIFDVT 60

Query: 64  LCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICA 106
           LC+VDV KFPI+PHP CCKAI KLNDCAP +FQ IPPADMDVIKKICA
Sbjct: 61  LCLVDVFKFPISPHPLCCKAIFKLNDCAPVVFQTIPPADMDVIKKICA 108

[Close]
BLAST of Lsi06G010360 vs. ExPASy TrEMBL
Match: A0A5D3CGL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00200 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.8e-25
Identity = 69/109 (63.30%), Postives = 81/109 (74.31%), Query Frame = 0 

Query: 5   AVKSLNASTMTLTFVFLVCMVILAPS----TMAVVPYP---SVPQNFPFSSCVPFILDAT 64
           A KS +AST+ L  VFLVC+VILAPS    TMA  P P    + Q+  FS+C PFIL+AT
Sbjct: 3   AAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEAT 62

Query: 65  LCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL 107
           +C+VDVIK P+APHPSCCKAI  LNDCAP+I+Q IP   MDVIKKIC L
Sbjct: 63  MCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIP--GMDVIKKICGL 109

[Close]
BLAST of Lsi06G010360 vs. ExPASy TrEMBL
Match: A0A0A0LTD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.7e-25
Identity = 70/110 (63.64%), Postives = 80/110 (72.73%), Query Frame = 0 

Query: 5   AVKSLNASTMTLTFVFLVCMVILAPS----TMAVVPYPSV----PQNFPFSSCVPFILDA 64
           A KS +AST+ L  VFLVC+VILAPS    TMA  P P +      +  FS+C PFIL+A
Sbjct: 3   ATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEA 62

Query: 65  TLCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL 107
           T+CVVDVIK P+A HPSCCKAI  LNDCAPQI+Q IP  DMDVIKKIC L
Sbjct: 63  TMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIP--DMDVIKKICGL 110

[Close]
BLAST of Lsi06G010360 vs. NCBI nr
Match: KAA0050069.1 (hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK10341.1 hypothetical protein E5676_scaffold367G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 3.1e-34
Identity = 79/108 (73.15%), Postives = 85/108 (78.70%), Query Frame = 0 

Query: 4   MAVKSLNASTMTLTFVFLVCMVILAPS-----TMAVVPYPSVPQNFPFSSCVPFILDATL 63
           MA +SLN S M L  VFLVC+ ILAPS     T A  P PSVPQNFPF  C PFIL+ATL
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 64  CVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL 107
           CV DVIKFPIAPHPSCCKAI KLNDCAP+I+QKIP  DMDVIKKIC+L
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

[Close]
BLAST of Lsi06G010360 vs. NCBI nr
Match: TYK10334.1 (hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.5e-28
Identity = 69/98 (70.41%), Postives = 75/98 (76.53%), Query Frame = 0 

Query: 14  MTLTFVFLVCMVILAPS-----TMAVVPYPSVPQNFPFSSCVPFILDATLCVVDVIKFPI 73
           M L  VFLVC+ ILAPS     T A  P PSVPQNFPF  C PFIL+ATLCV  VIKFPI
Sbjct: 1   MKLVLVFLVCIAILAPSTTMAGTTAAAPSPSVPQNFPFLKCAPFILEATLCVTGVIKFPI 60

Query: 74  APHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL 107
           APHPSCCKAI KL DCAP I+QKIP +DM+VIKK C+L
Sbjct: 61  APHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTCSL 98

[Close]
BLAST of Lsi06G010360 vs. NCBI nr
Match: KAA0050072.1 (hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa] >TYK10333.1 hypothetical protein E5676_scaffold367G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-25
Identity = 68/108 (62.96%), Postives = 75/108 (69.44%), Query Frame = 0 

Query: 4   MAVKSLNASTMTLTFVFLVCMVILAPSTMA------VVPYPSVPQNFPFSSCVPFILDAT 63
           MAVKSL AS +    VF+V + ILA S  A          PS+ QN  F SC PFI D T
Sbjct: 1   MAVKSLKASPIKSASVFIVSIAILAASVTAGRTVSSTTLDPSMSQNLSFFSCAPFIFDVT 60

Query: 64  LCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICA 106
           LC+VDV KFPI+PHP CCKAI KLNDCAP +FQ IPPADMDVIKKICA
Sbjct: 61  LCLVDVFKFPISPHPLCCKAIFKLNDCAPVVFQTIPPADMDVIKKICA 108

[Close]
BLAST of Lsi06G010360 vs. NCBI nr
Match: KAE8653023.1 (hypothetical protein Csa_023561, partial [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 2.0e-25
Identity = 67/107 (62.62%), Postives = 74/107 (69.16%), Query Frame = 0 

Query: 7   KSLNASTMTLTFVFLVCMVILAPSTMA-------VVPYPSVPQNFPFSSCVPFILDATLC 66
           KSL AS M L  VF+V + ILA S  A           PS+ Q+  F SC PFILDATLC
Sbjct: 1   KSLKASPMKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDATLC 60

Query: 67  VVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL 107
           +VDV KFPIAPHP CCKAI KLNDCAP +FQ IP ADMDV+K ICAL
Sbjct: 61  LVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDVVKNICAL 107

[Close]
BLAST of Lsi06G010360 vs. NCBI nr
Match: TYK10344.1 (hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 5.9e-25
Identity = 69/109 (63.30%), Postives = 81/109 (74.31%), Query Frame = 0 

Query: 5   AVKSLNASTMTLTFVFLVCMVILAPS----TMAVVPYP---SVPQNFPFSSCVPFILDAT 64
           A KS +AST+ L  VFLVC+VILAPS    TMA  P P    + Q+  FS+C PFIL+AT
Sbjct: 3   AAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEAT 62

Query: 65  LCVVDVIKFPIAPHPSCCKAILKLNDCAPQIFQKIPPADMDVIKKICAL 107
           +C+VDVIK P+APHPSCCKAI  LNDCAP+I+Q IP   MDVIKKIC L
Sbjct: 63  MCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIP--GMDVIKKICGL 109

The following BLAST results are available for this feature:
BLAST of Lsi06G010360 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi06G010360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U9A11.5e-3473.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CGK97.2e-2970.41Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U2L37.5e-2662.96Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CGL72.8e-2563.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LTD63.7e-2563.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1[more]
BLAST of Lsi06G010360 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050069.13.1e-3473.15hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK1034... [more]
TYK10334.11.5e-2870.41hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa][more]
KAA0050072.11.5e-2562.96hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa] >TYK1033... [more]
KAE8653023.12.0e-2562.62hypothetical protein Csa_023561, partial [Cucumis sativus][more]
TYK10344.15.9e-2563.30hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa][more]
BLAST of Lsi06G010360 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G010360.1Lsi06G010360.1mRNA