Lsi06G009920 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G009920
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Auxin-responsive protein
Location	chr06: 19935478 .. 19936834 (-)
RNA-Seq Expression	Lsi06G009920
Synteny	Lsi06G009920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATGTGAGTGATAAAAAAGGAACATCAGGGCAACTGGGTCGGCCAAAGCCAGAGCATTGATACGGACATCTTAGACGTTTTTCGCCTCACTCTCCAACACTTTGTCCCCATCCTCATTCTTGTCCCACAGCCCGCACGCACGACCCCTTCTCCTTTTAATCCCCCCCTCTTCCTCATCACCAACAACACCCACATCTCTCTTCAATTCTCTATATTCAATCATCTTTCTTCTTTTCCTGTTACTTAATACATATGTCTATGGAGCTTCAACTGGGCCTTGCTTTAATCCCCACCAATCCCAGCAAACCCTTCGACTTATTAGACACCCATCACACCAATCCCCTTTCTTTCGATTTCCATTCCATCACTCACAAAAAGCGTTCTCGTCATTTCGACTCCTCTGCGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGAATGACCATCCCAATAATGACGATGACGACGATTTTAATGACCCCCATTCCGCTTCCTCTAATGATTCGTATGTTAATATCTCCTACCCTCTTTTCTCTCTTTAATTTGGAATTTGATTTTGATTTGATGGGTGAGTTTTTGTTTGGTTGATGTAACAGAGACGAGGAGGAGGAACGGGAGAATGGGCTTGTGGGATGGCCGCCGCTTAAGAAGAGGAGGAAGAGTCTTTTCATGCAGAAACGCCTCGGACGGGGCACGGTGATCCGACGTCCGGCGGTGGAGAACGGTGGCGGGTTTTACAGAGGATTGAACTCGAATTATTCTCGATACGTGAAGGTGAAGATGGATGGAGTGGGAATTGCTAGGAAGGTTGATTTGAGCCAACATCATTCTTTTGATGCGCTTAGCTCCACTTTGATGAACATGTTTGGTAATCTAAAATCACTTTTAACCACATTTTCATACTATTAACATTGATTTTGAAAATAACAAAAATGGTTTTAGTCATTTCAGAATCACTGGAAACATACCATTATTTTGGATTTTTCTCTTTTTGTGTACTGATTTTGGGGTTGTTTGGATAACAGATGAAACGGATTCCGACGGTTACAGACTCAAATACCAGAATATCGACGGTGACTGGTTACTTGCTGAGAACGTAACTTGGAGGTAAAGCTAAAGATCTCGACATTTTTCATGGATATCAATTTATTTACATGGATTGTTTTAAAAAATTGAGTGGGGGTTTTGATTTTGACAGGGATTTCATCGGAAATGTTCAACGGATCAAACTGGAAAAGAAGAGCGACTGATGAGGGGTTACCGGCGGAGGCGGTCAGAGAATCAGATGCTGTCTAATTAATTAAATAGATTTCTATCTATTTTGTTTTGTTTTGTTTTGTTTTTTTTTTTTTTTT

mRNA sequence

CAATGTGAGTGATAAAAAAGGAACATCAGGGCAACTGGGTCGGCCAAAGCCAGAGCATTGATACGGACATCTTAGACGTTTTTCGCCTCACTCTCCAACACTTTGTCCCCATCCTCATTCTTGTCCCACAGCCCGCACGCACGACCCCTTCTCCTTTTAATCCCCCCCTCTTCCTCATCACCAACAACACCCACATCTCTCTTCAATTCTCTATATTCAATCATCTTTCTTCTTTTCCTGTTACTTAATACATATGTCTATGGAGCTTCAACTGGGCCTTGCTTTAATCCCCACCAATCCCAGCAAACCCTTCGACTTATTAGACACCCATCACACCAATCCCCTTTCTTTCGATTTCCATTCCATCACTCACAAAAAGCGTTCTCGTCATTTCGACTCCTCTGCGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGAATGACCATCCCAATAATGACGATGACGACGATTTTAATGACCCCCATTCCGCTTCCTCTAATGATTCAGACGAGGAGGAGGAACGGGAGAATGGGCTTGTGGGATGGCCGCCGCTTAAGAAGAGGAGGAAGAGTCTTTTCATGCAGAAACGCCTCGGACGGGGCACGGTGATCCGACGTCCGGCGGTGGAGAACGGTGGCGGGTTTTACAGAGGATTGAACTCGAATTATTCTCGATACGTGAAGGTGAAGATGGATGGAGTGGGAATTGCTAGGAAGATGAAACGGATTCCGACGGTTACAGACTCAAATACCAGAATATCGACGGTGACTGGGATTTCATCGGAAATGTTCAACGGATCAAACTGGAAAAGAAGAGCGACTGATGAGGGGTTACCGGCGGAGGCGGTCAGAGAATCAGATGCTGTCTAATTAATTAAATAGATTTCTATCTATTTTGTTTTGTTTTGTTTTGTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGTCTATGGAGCTTCAACTGGGCCTTGCTTTAATCCCCACCAATCCCAGCAAACCCTTCGACTTATTAGACACCCATCACACCAATCCCCTTTCTTTCGATTTCCATTCCATCACTCACAAAAAGCGTTCTCGTCATTTCGACTCCTCTGCGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGAATGACCATCCCAATAATGACGATGACGACGATTTTAATGACCCCCATTCCGCTTCCTCTAATGATTCAGACGAGGAGGAGGAACGGGAGAATGGGCTTGTGGGATGGCCGCCGCTTAAGAAGAGGAGGAAGAGTCTTTTCATGCAGAAACGCCTCGGACGGGGCACGGTGATCCGACGTCCGGCGGTGGAGAACGGTGGCGGGTTTTACAGAGGATTGAACTCGAATTATTCTCGATACGTGAAGGTGAAGATGGATGGAGTGGGAATTGCTAGGAAGATGAAACGGATTCCGACGGTTACAGACTCAAATACCAGAATATCGACGGTGACTGGGATTTCATCGGAAATGTTCAACGGATCAAACTGGAAAAGAAGAGCGACTGATGAGGGGTTACCGGCGGAGGCGGTCAGAGAATCAGATGCTGTCTAA

Protein sequence

MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPPLKKRRKSLFMQKRLGRGTVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKMKRIPTVTDSNTRISTVTGISSEMFNGSNWKRRATDEGLPAEAVRESDAV

Homology

[Close]

BLAST of Lsi06G009920 vs. ExPASy TrEMBL
Match: A0A0A0LWC5 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_1G231530 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.2e-59
Identity = 122/156 (78.21%), Postives = 136/156 (87.18%), Query Frame = 0


Query: 1   MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLL 60
           M+MELQLGLALIPTNP KPFD L+TH+ NP+S  F SI HKKRSRH DS A FR+TLPLL
Sbjct: 83  MAMELQLGLALIPTNPIKPFD-LNTHNNNPISLVFDSINHKKRSRHLDSPATFRQTLPLL 142

Query: 61  LWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPPLKKRRKSLFMQKRLGRGTVI 120
           LWNDHPN+ DDDD NDPHSASSNDSDEEEE ENGLVGWPPLKKRRKSLFM++ +GR  VI
Sbjct: 143 LWNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFMKEGVGRRAVI 202

Query: 121 RRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM 157
           RRPAV+N G F+RGL+ N SRYVKVKM+GVGIARK+
Sbjct: 203 RRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKV 237

[Close]

BLAST of Lsi06G009920 vs. ExPASy TrEMBL
Match: A0A1S3B8T8 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103487427 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 2.1e-56
Identity = 122/158 (77.22%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAF-RRTLPL 60
           M+MELQLGLALIPTNP KPFD L+TH+ NP+S  F SI HKKRSRH DSS  F R TLPL
Sbjct: 1   MAMELQLGLALIPTNPIKPFD-LNTHNNNPISLVFDSINHKKRSRHLDSSPTFPRTTLPL 60

Query: 61  LLWNDHPNNDDDDDFNDPHSASSNDSD-EEEERENGLVGWPPLKKRRKSLFMQKRLGRGT 120
           LLWNDHPN+ D DD NDP SASSNDSD EEEERENGLVGWPPLKKRRKSLFM++ +GR  
Sbjct: 61  LLWNDHPNDGDGDDSNDPLSASSNDSDEEEEERENGLVGWPPLKKRRKSLFMKEGVGRRA 120

Query: 121 VIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM 157
           VIRRPAV+N GGF+RGL+ N SRYVKVKM+GVGIARK+
Sbjct: 121 VIRRPAVKNDGGFWRGLDLNNSRYVKVKMEGVGIARKV 157

[Close]

BLAST of Lsi06G009920 vs. ExPASy TrEMBL
Match: A0A6J1HA19 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111461467 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 5.4e-49
Identity = 109/156 (69.87%), Postives = 122/156 (78.21%), Query Frame = 0


Query: 1   MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLL 60
           M+MELQL LAL PTNP+KPFD L+THH      DF SI+ KKR    D S+AFRRTLPLL
Sbjct: 1   MAMELQLSLALFPTNPTKPFD-LNTHHRALPCLDFDSISRKKRPLDIDPSSAFRRTLPLL 60

Query: 61  LWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPPLKKRRKSLFMQKRLGRGTVI 120
           LWNDHPNN DDD  N P+SASSN  D  EE+E  LVGWPPLKKRRK+LF+QKR+GR   I
Sbjct: 61  LWNDHPNNGDDDPKN-PNSASSNHPDNPEEQEIELVGWPPLKKRRKTLFVQKRIGRAVAI 120

Query: 121 RRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM 157
           RRPA+EN GG YR LNSN SRYVKVKM+GVGI RK+
Sbjct: 121 RRPAMENDGGVYRELNSNNSRYVKVKMEGVGIGRKV 154

[Close]

BLAST of Lsi06G009920 vs. ExPASy TrEMBL
Match: A0A6J1JF88 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111485214 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.0e-47
Identity = 108/156 (69.23%), Postives = 123/156 (78.85%), Query Frame = 0


Query: 1   MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLL 60
           M+MELQLGLAL PTNP+KPF  L+THH      DF SI+ KKR    D S+AFRRTLPLL
Sbjct: 79  MAMELQLGLALFPTNPTKPFH-LNTHHRALPCLDFDSISGKKRPLDIDPSSAFRRTLPLL 138

Query: 61  LWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPPLKKRRKSLFMQKRLGRGTVI 120
           LWNDHP ND DDD NDP+SASSN  D  +E+E  LVGWPPLKKRRK+LF+QKR+ R  VI
Sbjct: 139 LWNDHP-NDGDDDPNDPNSASSNHPDNPKEQEIELVGWPPLKKRRKTLFVQKRIRRAVVI 198

Query: 121 RRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM 157
           RRPA+ENGGG +R LNSN S YVKVKM+GVGI RK+
Sbjct: 199 RRPAMENGGGVHRELNSNNSLYVKVKMEGVGIGRKV 232

[Close]

BLAST of Lsi06G009920 vs. ExPASy TrEMBL
Match: A0A6J1F6G3 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111441247 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 4.0e-36
Identity = 99/156 (63.46%), Postives = 111/156 (71.15%), Query Frame = 0


Query: 3   MELQLGLALIPTNPSKPFDLLDT--HHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLL 62
           MELQLGL+LI   P+KPFDL ++   H      D +S   KKR  H D S AFRRTLPLL
Sbjct: 1   MELQLGLSLI---PAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLL 60

Query: 63  LWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPPLKKRRKSLFMQKRLGRGTVI 122
           LWNDHPNN DDDD NDPHSAS++  +EEEE +N LVGWPPLKKR+    MQKR GRG   
Sbjct: 61  LWNDHPNNGDDDD-NDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRG--- 120

Query: 123 RRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM 157
            RPAV NGGG     NSN SRYVKVKM+GVGI RK+
Sbjct: 121 -RPAV-NGGGL--NWNSN-SRYVKVKMEGVGIGRKV 144

[Close]

BLAST of Lsi06G009920 vs. NCBI nr
Match: XP_038879327.1 (auxin-responsive protein IAA29-like [Benincasa hispida])

HSP 1 Score: 262.7 bits (670), Expect = 2.7e-66
Identity = 134/159 (84.28%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MSMELQLGLALIPTNPSKPFDLLDTHHT---NPLSFDFHSITHKKRSRHFDSSAAFRRTL 60
           M+MELQLGLAL PTNP KPFD L+THH    NPL FDF SITHKKRSR F+ SAAFRRTL
Sbjct: 1   MAMELQLGLALTPTNPIKPFD-LNTHHNNPHNPLCFDFDSITHKKRSRDFNHSAAFRRTL 60

Query: 61  PLLLWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPPLKKRRKSLFMQKRLGRG 120
           PLLLWNDHPN+ DDDD NDPHSASSNDSDEEEERENGLVGWPPLKKRRKSLFM+K +GR 
Sbjct: 61  PLLLWNDHPNDGDDDDSNDPHSASSNDSDEEEERENGLVGWPPLKKRRKSLFMKKHVGRA 120

Query: 121 TVIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM 157
            VIRRP VENGGGFYRGLNSNYSRYVKVKM+GVGIARK+
Sbjct: 121 AVIRRPMVENGGGFYRGLNSNYSRYVKVKMEGVGIARKV 158

[Close]

BLAST of Lsi06G009920 vs. NCBI nr
Match: KGN65132.1 (hypothetical protein Csa_023489 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 2.4e-59
Identity = 122/156 (78.21%), Postives = 136/156 (87.18%), Query Frame = 0


Query: 1   MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLL 60
           M+MELQLGLALIPTNP KPFD L+TH+ NP+S  F SI HKKRSRH DS A FR+TLPLL
Sbjct: 83  MAMELQLGLALIPTNPIKPFD-LNTHNNNPISLVFDSINHKKRSRHLDSPATFRQTLPLL 142

Query: 61  LWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPPLKKRRKSLFMQKRLGRGTVI 120
           LWNDHPN+ DDDD NDPHSASSNDSDEEEE ENGLVGWPPLKKRRKSLFM++ +GR  VI
Sbjct: 143 LWNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFMKEGVGRRAVI 202

Query: 121 RRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM 157
           RRPAV+N G F+RGL+ N SRYVKVKM+GVGIARK+
Sbjct: 203 RRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKV 237

[Close]

BLAST of Lsi06G009920 vs. NCBI nr
Match: XP_004150206.2 (auxin-responsive protein IAA29 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 2.4e-59
Identity = 122/156 (78.21%), Postives = 136/156 (87.18%), Query Frame = 0


Query: 1   MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLL 60
           M+MELQLGLALIPTNP KPFD L+TH+ NP+S  F SI HKKRSRH DS A FR+TLPLL
Sbjct: 1   MAMELQLGLALIPTNPIKPFD-LNTHNNNPISLVFDSINHKKRSRHLDSPATFRQTLPLL 60

Query: 61  LWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPPLKKRRKSLFMQKRLGRGTVI 120
           LWNDHPN+ DDDD NDPHSASSNDSDEEEE ENGLVGWPPLKKRRKSLFM++ +GR  VI
Sbjct: 61  LWNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFMKEGVGRRAVI 120

Query: 121 RRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM 157
           RRPAV+N G F+RGL+ N SRYVKVKM+GVGIARK+
Sbjct: 121 RRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKV 155

[Close]

BLAST of Lsi06G009920 vs. NCBI nr
Match: XP_008443966.1 (PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 4.3e-56
Identity = 122/158 (77.22%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAF-RRTLPL 60
           M+MELQLGLALIPTNP KPFD L+TH+ NP+S  F SI HKKRSRH DSS  F R TLPL
Sbjct: 1   MAMELQLGLALIPTNPIKPFD-LNTHNNNPISLVFDSINHKKRSRHLDSSPTFPRTTLPL 60

Query: 61  LLWNDHPNNDDDDDFNDPHSASSNDSD-EEEERENGLVGWPPLKKRRKSLFMQKRLGRGT 120
           LLWNDHPN+ D DD NDP SASSNDSD EEEERENGLVGWPPLKKRRKSLFM++ +GR  
Sbjct: 61  LLWNDHPNDGDGDDSNDPLSASSNDSDEEEEERENGLVGWPPLKKRRKSLFMKEGVGRRA 120

Query: 121 VIRRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM 157
           VIRRPAV+N GGF+RGL+ N SRYVKVKM+GVGIARK+
Sbjct: 121 VIRRPAVKNDGGFWRGLDLNNSRYVKVKMEGVGIARKV 157

[Close]

BLAST of Lsi06G009920 vs. NCBI nr
Match: XP_023515749.1 (uncharacterized protein LOC111779818 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-49
Identity = 110/156 (70.51%), Postives = 123/156 (78.85%), Query Frame = 0


Query: 1   MSMELQLGLALIPTNPSKPFDLLDTHHTNPLSFDFHSITHKKRSRHFDSSAAFRRTLPLL 60
           M+MELQL LAL PTNP+KPFD L+THH     FDF SI+ KKR    D S+AFRRTLPLL
Sbjct: 1   MAMELQLSLALFPTNPTKPFD-LNTHHRALPCFDFDSISRKKRPLDIDPSSAFRRTLPLL 60

Query: 61  LWNDHPNNDDDDDFNDPHSASSNDSDEEEERENGLVGWPPLKKRRKSLFMQKRLGRGTVI 120
           LWNDHPNNDDDD  NDP+SASSN  +  EE+E  LVGWPPLKKRRK+LF+QKR+GR   I
Sbjct: 61  LWNDHPNNDDDDP-NDPNSASSNHPNNPEEQEIELVGWPPLKKRRKTLFVQKRIGRAVAI 120

Query: 121 RRPAVENGGGFYRGLNSNYSRYVKVKMDGVGIARKM 157
           RRPA EN GG YR LN N SRYVKVKM+GVGI RK+
Sbjct: 121 RRPATENDGGVYRELNPNNSRYVKVKMEGVGIGRKV 154

The following BLAST results are available for this feature:

BLAST of Lsi06G009920 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G009920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWC5	1.2e-59	78.21	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_1G231530 PE=3 SV=1	[more]
A0A1S3B8T8	2.1e-56	77.22	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103487427 PE=3 SV=1	[more]
A0A6J1HA19	5.4e-49	69.87	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111461467 PE=3 SV=1	[more]
A0A6J1JF88	1.0e-47	69.23	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111485214 PE=3 SV=1	[more]
A0A6J1F6G3	4.0e-36	63.46	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111441247 PE=3 SV=1	[more]

BLAST of Lsi06G009920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879327.1	2.7e-66	84.28	auxin-responsive protein IAA29-like [Benincasa hispida]	[more]
KGN65132.1	2.4e-59	78.21	hypothetical protein Csa_023489 [Cucumis sativus]	[more]
XP_004150206.2	2.4e-59	78.21	auxin-responsive protein IAA29 [Cucumis sativus]	[more]
XP_008443966.1	4.3e-56	77.22	PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo]	[more]
XP_023515749.1	1.3e-49	70.51	uncharacterized protein LOC111779818 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi06G009920 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 41..156 e-value: 6.3E-10 score: 39.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..85
None	No IPR available	PANTHER	PTHR31734:SF44	AUXIN-RESPONSIVE PROTEIN IAA29	coord: 3..156
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 3..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G009920.1	Lsi06G009920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006487	protein N-linked glycosylation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003830	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity