Lsi06G007760 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G007760
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionexportin-4 isoform X1
Locationchr06: 15379151 .. 15389450 (+)
RNA-Seq ExpressionLsi06G007760
SyntenyLsi06G007760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAAAAGAAAAAAAAAAAAAACCATAAATCCCGTGAATCACCAAATGACCAAATTGCATTTATCTCAGTCCCCTTCATTTTCGTCAAAAACCCAATGATTTGGCGTGTTCTCCTAAGAAAACACACCACGGCGCGCTTCCTCGCATGTTCATAAACTGCCAATCTATTTCAATCTTTGAGTCAAATTCAAAGAGATTTCCCTTTACTCTCAACTTTCTTCCATCCCCATTTCTCTTCTAAATCCGTTCTTTCTATCTCTCAACAATCAATTTTTCCGTAACCATTGAGTATTACAAGAAAATTTTAATCCGGACCTCTGACCTGAGGTCCTCCGGTATTGAATCTACTGTACGAAGATGCAATGTTTTCAAGATGCCAGTGGCCCTCCAAACTTGGCTCAACTTCAGGCCACCATGCAAGCCATTGAGCTTGCCTGCAGTTCCATACAGGTTTTACTCACTCTGACTACTGTTTTTTGGTTGCTTGGAAAAGATCAGATGTGGGAACTGAATAGAAAGAAGGGGATTTTATAACCATATGACTTTCCCCAGAATGTTCGATTGGATGAAATCTCTTGTAACTGTAAAGGGAAGTAAAAACATTTTGAAGTAAACCCATTTGCCCATGCGTTGATGTTATAATCTCTATGAATACTAAGCCCAATTGTAGTCTTGTGAATGAGAAAAGACAACGCAGTTCTTTTGTTTCTGATAAATATTGGTAATTATTACAAGTTTTCAACTAGAGAAGAATCTGTTAACTTGTTGGGTGAACTCGTTTATTACCATGAGTCTAATAATAAACGATTTAAAAGAGGCTGTAAAGATATAGGATTACTTTCTATTTCCTGGACAAGTTAAAAGAGGCTTGATACTCTAGAAGTGAGGCGCTCTGGAACTCTGTTACAAAATTTTCAATAATTTTGGCATAGATAACATCGGAACTCTGAGCCAAAACAGTTTTTAATTATTTTTCTGGTGAAGTTGTCTTGAAAACTTATGATAGTTCCAGAAAAGCTTTTGTGCACCTTTATGGCCTTTTCAATTGCACCTGTTTGTGATTTGTTGAATTCCAACATGGTACTTTTGGTGTCTCTGTGATTGTCAGTTTTTAGCCAAAATAGAGTCTTTAATTCCTTTGATACTTAGAAAGAAATTTGCATATAATTTGGATCTTGTGTGCTTGAGAGCTTATGATAGTTTCAGAAACGTCCATTGAGCTACTGAGGAACAACGGTAAATTAGGTCTTAGCTTTTGCGGCACTGTTATGTCCTTTAGAACTGACTAAACCTGTTTTATATATATATATATATATATATATTCCAAAATGCTACTTTTAACGTTCTTTGTGAACATGCATCAATGGCCATGCTAATGCTGTTATATAAGCCTTTTTTGTTATACTGTTTGCTCAATCCATCATCTTGGGAACACAATTTTTTATGCATATTGTTTCTTAGATGCACATCAACCCATCTGCAGCAGAGGCAACTATTCTATCACTTCGCCAGGCGCCTCATCCATATCAAACATGCCAGTTCATTCTTGGTAAGTTGATTCGCTGAAGAAATTTTGAATTGTAATAAATTTGAAGCCTATGAACTACAAAACTTTTATGCTAAATTGTACAAATCGAATATGGTATGGGGCTGCAAAAATACAAGTTTTGATAAATTTATTCCTCTACATGACTCAAGAGACCGAGCTTCCTTAACTCAAAGTTGTACAAATCTAGGCTTTCCAAACCCATAGCCAATTGACCTCTGAATTTACCAAAAGGGACCTTTGTTACCATCAATAGAAGAGGCACCATAATCACAAAAAACTGGCAAAAACTTTATAGTACTGACTAGGCTAGAATGGAAGATTCCTTTATGAATTTTTGATCTCCTAGTATTTGCAAGATAGCATGTTGCTGCTGCAAGGAGAAGTGATAGCTACGGAATATTTTAGAAGCATATCTCTTTTTATTTATTTATTTTTAGAAACAATTACTCATTAAGAAGAGATGAAAGAATACAGGAGTGTACAAAAAACATAGCCTACAAAAATCCCTTTAAAGAAAGGGGTTCCAACTTAGTAAAATGTTGCCTATAAAATAATTACAAAAAGTTTTCGAAATCGAAACCCAAAGAGAAACATGGAACCTCACTGAGGACCAAACGTCACTAAGGTCCCTCTCTACATCTCTATACATTTTGCCATTTCTCTTCATCCAAAAATCCCATAACAAAGCACACACCCCAACAAACCACAAAAAACAACATTTTTCTCTAAAAGGCGGATGGAGGAAGAACTCCCTCAACGACGCTTTAACATCTCTTTGACGGGCAAGAACAAAACCAACCTCCTAAAGAAGTGGTTCCACACAGACCTCACAAACTCACTACACCAAAGAAGGTGATCCAAGTCTTCCTCTATCTTCCGACAAAGAGTACAATAAAATGAGCCCATTAACGAGAGAATCTTTCTCAAAACCTATCCATAGTGTTCACACGACCGAGTAAAACTTGCCAGGTAAAGAACTTAACTTTCTTAGGAATTTTAATCCTCTTCAAAACATCAATGACCGACTTAATAACGGGACAAAGATCCAATAAATACCGAAAGAATGACTTACAAGAGAATCCCTCTAAAGGATTGGAACTCCAAACACAAACATCCCTTCTCCTAAACTTAAAATTAAACTCTTAAATCCAAGACAAAAAAGAGGCAACCTTCATCATTTTCCTATCGAACGACGATTTACGGAAACTAAGCGAGAAAGAAACTCCCCCACCAAACCAAAAATCAGAGACCAAACGATTTTTATGGGAAGACAAATGATATAACCAAGGAAACGTAAAGTAGAGGGGTCTATCCTCCACCCATTTTCCTTCCCAAAAATACGTTTCCTTACCTTCCCCCCACCACACAATGAAAAAGTTGGGACAAGGAAGGGAGCTCAAGAGAAATATCCTTCCACAAATTTCGGTATGTGCCTTTTAACCCTACTCAAAGAACATTCAAAGGGGTGGGGCCCATGCTTACTAGCAATAATCCTATGCCATAAAGATTTAGGTTCAAGGGAGAAACACCAAAGCCATTTAGTCAAAAAAGCTTTGCTTTGAAACCATAAATTCCCAAGCTTTAACCCCTAATTCACAAATCTCCCTGTGACCTCCTAGCTAACCAGATGCGAACCCTTCCCTTCATCCTCCCCTTCTCATAGAAAATCCAGAAAATCCCATATAAGCTTCTGGATACTATTGCAAACCGAACAAAGGGCTTGAAAAGGGGAAAAATAATAATGAGAATGCCACTCAGCATCAACCTTATCCACTTTCATCTCTGGAGAAGAAACACTTCTTCCCAATTTCTTCCTCACTTTTTCAACTATCGGGTCCCATAAAAAGATAGGCTTTGGGTTTCCTCCAAGAGAAAGGCCAAAGTAGGAGGAGGGAAATGAGCCAATATCACAACCAACCAAATTTGTGCAACTCCAAAGCTTCTATTGATTGCAATTGAGACCCAAAATATGACATTTCCTTCGATTAATTTTGAGCCAGACGGGCCTCAAAGAACCCCAACATATGGAGGTCAACATGTTGCCCACTTAATTATTTAGCATTTTACTGCATAAACAACTATGTAACCTCACAAAGTAACCACTTGTGACATCTGAATTAGTATATTGTAAACACTTTTCATTTCTATTATTATTAGAGTGAACAGGTTGATTCACGTGGGTGACCTTTTTTCATATAGGATTGTTTGAGATGACGTTTGGTCTAGTCTATCTACTTGATTTTACTAAATTTTGTATAATTATCAAAGTCCTATCCCAATTTCAGTCTAGTATGTGTCTTATGAATTATTTTGCAAAGGAGAGAATTGATCAAATTTGCAAGTGAGGCACAACATTAAAGATATGTGTTGATGTAAGCTTAGTAAAAGATAGGCTGCAATTTTGACCATTAAGCTATTATATGTTAATTTGGATGCATTTGGAGTTTGTCATGATCATGAATTTGTTAGGAATCTTATAAGATAAATATTAGAAATATTTTTAGGATTGTAGAGGCATATTTGTCATTAGTTAAGGAGTTAGTTATGAAGAGTGGTTTTGAATAGAGCAAGCGAGGAGGGTGAAGAAGGCAGTTTTCTAGACATAGTTTATGTGAGAATCCATGTCTTTCAAAGTATTTGGCGAACTTGTTGGTTTCTTTTTAATATTATTAATATTTCCATTAATTTTTAGTTCCCATCAGAATGGTTCTGTTAGAATTTTTATGTTTATAAACTTTTTCCAATAGTGTTTATGTGGTGGACAAGAAGCTAAGGACTTGATCTTGCTTCTTGTCAATATGTTATGTAATATCTGGTGGTCCTTTCAGTTGGAAGGATTAATTGATGAACTATTAGATATGAACTCTACTTGGTTTATCAAGTACACACGTGGAGTATTAGAGATGCAATCAATTTTCTGAGTAAATTGTAGCGGTGATTATTATTCTTAATCAACAAGAAGATTTTCCTCCTTTTAAAGGATAATTTTTTTTTCAATTCTTCGTGGTTTTTTCATAAAAAAAAAAATTTGATTTGACCATGTTTGTATGCTAGCTCTATTTATGATCTTCCTGCCTCCCTCCCTCTATTTTTTTTGTTGAGTCTGTGCATGTTCTTCAAAGCACTATGAAAAATTATAGATTCACGAATCTTTTGCTTTCTTATTATGGTGCAAAAGATGATCTCTCAGGTTTTAGTGCTGATCTTGGCTGTTGATGTCTTATCCAGAAAATTCTCAGGTAGCTAATGCACGATTTCAAGCTGCTGCTGCAATTCGAGATGCTGCTATTAGGGAGTGGAGTTTTCTTACTGCTGATGTCAAGAGAACTTTAATTAGGTCATTTTTACTTCTATGAAATAATTTACTTTTTGGTTTCTTTTTTCAGTGCAATATGTTTTCATAACTGCTAGACGCACTGAAAGGAAAAAAGGAATTGTTAATTTACTTATGTTATTTTGGCAATACTTTGAGGCACTTGATGGTTGATAAATGCAAAACAGCTAGGAGGTGTGGGATTTAGAAACAAAATATTGGGGTATGACAGAAGAAATTTGAAGGAAGAGGAGGAGAGTGAGCTGAGTTTGATTTTGGAAATGTTTAGTTCTTGAAATGGCCATTTCATGGTTAGATCTCTAGTTCATAAATTGAATGATGATGATAGACTTCTGGATTTAATTTGTTTTCAAAGATTTGGGAAGGAACTCGCTCAAAAAGGGTAAGATGTTCATTTGGTTGGTTTGAAGAGTCTCAATTTGAAGATTTGAAGATGTCCTTTGTGTGGCTTAAAATCATTCTCAATGTTGGTCAAGTTTGGTGGATGGCAAAAATTTGTTTCATATGCTTTATTAGAGGAGGTTGTGGAATCAACCATCTACTGAATTTGGTGGGCCTATCATGAGTTTTCATCATTTAACCAGTAAAAGTGTGAAATAATTGTTATGTGGGAATCAACCACCCTGGATTCGCTTTGTGCCATTAAGGCATGTGAAAGAAGTAAAAGAAACTATGGGGGAATAAGATTAAACTTATGGTGGCCTGGCCACCTATGTAGGATATCAAGATTTTATGAGTTTTCTTTGATAATTAAATGTGCTTGGATAAGATAATTATCCTGTAGCACGTAGCTGGTTTGAATACTTATAGATATCATAAAAGAAAAATTGTTATGTGGGTATACATTGAAATGGAAAGCAAGAAAGCTGTGAATTAATACCGTAAACTCTTTTTTGTGGAATATGTGGCTGGAAAGGAATCAGAAGTGTTTAACACGGTGGTGAGAGAATGGGAGGAGGTGTTAGCTTGTGCTAAGCTAATTGTTCTTTGTGGGTATCATATTTTCTTGGATTGCTCCTATGCTTCCTCATATCATGTTGGATCAAGCTCTTCTCAGAATTTTCAACTTACAGTGGGTTTTCTCCAATACTTTGAAAGCCAATGTTTTACAACTTCTTTTGGGTTCTCAATTGGCTCCAGTGGCAAATCTTCTCTTGATTAATGTTGCTAAAGCTCTTCTATTAGAATTTTGGTTGGAAAGAAATCAGAAATTTAAAAAATTCTTCTCTTCTCACCTTCATCGTTTGATTCATAAAACACATCTCAAAGATTTTTATTGGTGTTCGTTATCAAAGCTTTCAGTGGTTTTTCCGTTCAAGATATCTCTCGAAGCTGGGATGCTTCATTTCCCCTTTTTAAAAGTTTTATTAGTCTTGGTGTTCCTTCTCCTTTCTAGTTTTGTCTTGTCTTTTATTTGTACTGAGGTTCTTTTTTCATCCGTTTGTTTTTATCCGGGTGCATTTTTAGTAGAGTATCTTTTCATCTACTTAATGAAAAGTTTTGTATTTTCTTCTTTTAAAAGGTATCTTAAGATATGAAGTTTGAGGGACATTCTGTTTTGTTTTGAATTATAATTGGGAAGGCGTTTAATAAGTTCATTGAAGATAGTGGGTTGTTTGATCCTCCTCTGATTGATGATAAGTTTACCTAGGCCAATAGCAGAGCTGCTACAAGGATTGATAGATTTCTTTTGACTAAGGATTGGATTGATAGGTTTGGAAATCTGAGGCAGACGAGAGGGCCAAGAGTTACGTCGGATCATTGGCCCATTATCCTGACTTCAGGATTTCTGAACTGGGCCCGAGCCCATTTCGTTTTGAGAATATATGGCTTGATCATTCGTCTTTTAAGGCTAATATTTCGTCTTGGTGGAGTACGACGATCTAAGGAAAATGGGAAAGCTATCGTCTGATGGGAAAGCTGAGGGTGTTAAACGGAAACCTTAGAGTGTGGAATAGAGAAGTCTTTGGAGATATCCGAATTAAGAAGAAAGAGATCTTAGCTAGAATTGATGAGATTGACGCTCTCGAGCTGGAAGGTCCTCTTGTCGGCACTCTGATTCTTGAGAATGGGGTGTATACCAGTAATGACAAGGAGATTGAGGAGGAAATTCTTTTGGCCTTCTCTAAGCTTTATAGTCCGACTATTCAGGAGAAACCGTTTGTGGAAGGCATTGATTGGAGCCCATTTCTTCTAGGGAGGATGAGGAGCTAGTGGCTCCGTCTACGTTGGAGGAAATTAGAAAGGTTGTTTTTGGCCGTGATAGGAATAAATCCCTAGGCCCAGATGGCTTTACCATGGCTTTCTTCCAGGACAATTGGAATCTTGTTAAGAGTGATTTGGAGGGAGTTTTAAAGAGTTCTTCGAAAGAGGTATTTTGAATCGGTCCTTGGTGGAGACTTATGTGTGTCTAATTCCTAAGAAGGAGAATGCTAAGAGGGTGAAGGAGTTTAGACCTAGTAGTCTAATAACCAGTGTTTATAAGATCATGGCTAAGGTTCTCGCTAATCGGTTAAGGAAAATTATGCCCTCTACCATCTCTAAGGCACACGGAGCTTTTTTGGCTGGAAGGCAGATCTTGGATCAGGCTCTTATAGCTGTTATAATATGTCCTTAATTGTAATTATCTATGTATATTGTCCTTAATTGTAATTTCATATTTTCTAGTTTAGGGTTTCTATCTCGCCTATATATATGTAACTCAAGTCTTATGGAATTGACTTTTGTGAGATTCATTCTCTGAATTATAGAGTACAATAGCCAATGAGGCCATCGAGGATGCTCGCACGAGGAAGAAGGAGGGAGTTGTGCTCAAACTTGACTTTGGAAAGGCCTATGATCATAATACAAATTTGAAAGAAACTAGGCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCAAAAGCTCTCTCCTCTCTCCTCTCGTCTCTCTCACCCTTTCCTCCGACCATCATCTTTCTGTCCGACCAAATTTCCCACCAACTCCAGTGTGGCGTCTTTGAAGACCTTCTCCTGCTTCGACGAGGTAACGGTAGAATTGATTGAAGTTTGCAGATAATCTTTTGAAATCATCCTTTTCTCTTCAATCATGGAAACGAAAAGCTGTAATATCAAAGGAGTCCATTTCTGCTCATGGTTTGACTCAGATACTTTCAAAGTGGAAGATGTGGAGGCTAGCAAACACGTCCCTCTTTCTGGCTCTCATATGTTATGGTTTATTGAGAATATATCTGAATTATCTCAAGGCTCTGCTTCTCGTTATTTCGAGCGAAGTGGTCGTGACATTTCAGGAGTCACAAAATTATCAAAATTCCGTTCAAAGTCAGGGTGGGTTTTACGATGTGTTGTCTGGCCTTCCTATGGGGGTAGATTCTTTATTCATATCCCTCCAGGTGATTCTTTTGAGGGTTGGAAAGTATTCGTACAAATGCTCAGAGACCAATTGTTATACTACAATGTTTCAGAACAACAAGCAACTGCTAGGAGAAGCCTTTTAGCAGTTAAGGAAGTGCTCAGCAAGCAACTGCTAGGAGAAGCCTTTTAGCAGTTAAGGAAGTGCTCATTGGAACAAGAAGTTACGTGGATGTAGTGAAAAAATCAAAGAAATGAGCTATGTTTTAGCTACACAAAAATAGAGCTTTCATTCAGACAGCAACAAGGAAGTGACAAGGAAGTGACATACTCTGTTTCAGAGTTTAAAAAACAGAGCATTGATAACTATTGGGTGATCAAGAATAAAGAGGTTTTCAGAGAAGATTTTAGTAACCTTTGGATAGTTACAAGGCTTTTTGAATTTAATGAGTGGAATGAAATTGCCAATACACTCACTGATTATTTTCAATCCAAAGTCATTATCAACCCTCTATTTACGGAAAATGCGTTAATTAAACTGGACCAAGGCAACTTGGAGGATCTGATAGAAGGCCAAGGGAAATGGCAGGAGTGTGGTTCTTTCCATCTAAAATTCGAAAAATGGAACAAGTTCGTGCATAGCAGACCTTCATTTTCAAAAGGGTATGGAGGATGGATTTCTATCAGAAACCTTCCTTTAGATTATTGGTGCAGGCAAACATTTGAGGCCATAGGTGCTTACTTTGGAGGTTTGGAAGAAATATCATCAGAAACTTTGAATCTACTCAACGTTTCTTCAGCTAAAATTAAAGTCAAGCCAAATCTTTGCGGTTTTATGCCATCTTTCATTGAGATTTTAGATGAGAAACGTGGATTTATCTATTTGAATTTTGGTGATACTGTGGCCTTGGATCCGCCAGCCAAGGTGAAAGAAGATTTATTTGTCAAGGATTTTATTAACCCCATTGATATTGTTCGTTTATCACAAGTAATGCAAGATGAAGGGGTATCCTCTATGCCTATCAATCTTGAGATGAAATTTCTGCTTCCTTTGATGTTCACAAAGAATTAATCTAGAAATCCTTCCGCCAAAATTTTGAAAGAAAAACAAAGCTCGCCGGAATTCATCGATGAATCTATCCATGGCAACGCTCCTACTCAACCGTCGATTGATCAGAGAACTGGAAACTCCATCCGGTTCAATGTGAACGAGGTTCAAGATTTGTTTGAGGTGGAGAAAGAGGACGACATTCCGTTAGAAAGAGAAGGTCATTCCATATCACCAAAAAGTGGCGCCAAAGATAATTTCCGAATGCCAACGTTTGATATCCAAGAATAG

mRNA sequence

TTCAAAAGAAAAAAAAAAAAAACCATAAATCCCGTGAATCACCAAATGACCAAATTGCATTTATCTCAGTCCCCTTCATTTTCGTCAAAAACCCAATGATTTGGCGTGTTCTCCTAAGAAAACACACCACGGCGCGCTTCCTCGCATGTTCATAAACTGCCAATCTATTTCAATCTTTGAGTCAAATTCAAAGAGATTTCCCTTTACTCTCAACTTTCTTCCATCCCCATTTCTCTTCTAAATCCGTTCTTTCTATCTCTCAACAATCAATTTTTCCGTAACCATTGAGTATTACAAGAAAATTTTAATCCGGACCTCTGACCTGAGGTCCTCCGGTATTGAATCTACTGTACGAAGATGCAATGTTTTCAAGATGCCAGTGGCCCTCCAAACTTGGCTCAACTTCAGGCCACCATGCAAGCCATTGAGCTTGCCTGCAGTTCCATACAGATGCACATCAACCCATCTGCAGCAGAGGCAACTATTCTATCACTTCGCCAGGCGCCTCATCCATATCAAACATGCCAGTTCATTCTTGAAAATTCTCAGGTAGCTAATGCACGATTTCAAGCTGCTGCTGCAATTCGAGATGCTGCTATTAGGGAGTGGAGTTTTCTTACTGCTGATGTCAAGAGAACTTTAATTAGAAATCCTTCCGCCAAAATTTTGAAAGAAAAACAAAGCTCGCCGGAATTCATCGATGAATCTATCCATGGCAACGCTCCTACTCAACCGTCGATTGATCAGAGAACTGGAAACTCCATCCGGTTCAATGTGAACGAGGTTCAAGATTTGTTTGAGGTGGAGAAAGAGGACGACATTCCGTTAGAAAGAGAAGGTCATTCCATATCACCAAAAAGTGGCGCCAAAGATAATTTCCGAATGCCAACGTTTGATATCCAAGAATAG

Coding sequence (CDS)

ATGCAATGTTTTCAAGATGCCAGTGGCCCTCCAAACTTGGCTCAACTTCAGGCCACCATGCAAGCCATTGAGCTTGCCTGCAGTTCCATACAGATGCACATCAACCCATCTGCAGCAGAGGCAACTATTCTATCACTTCGCCAGGCGCCTCATCCATATCAAACATGCCAGTTCATTCTTGAAAATTCTCAGGTAGCTAATGCACGATTTCAAGCTGCTGCTGCAATTCGAGATGCTGCTATTAGGGAGTGGAGTTTTCTTACTGCTGATGTCAAGAGAACTTTAATTAGAAATCCTTCCGCCAAAATTTTGAAAGAAAAACAAAGCTCGCCGGAATTCATCGATGAATCTATCCATGGCAACGCTCCTACTCAACCGTCGATTGATCAGAGAACTGGAAACTCCATCCGGTTCAATGTGAACGAGGTTCAAGATTTGTTTGAGGTGGAGAAAGAGGACGACATTCCGTTAGAAAGAGAAGGTCATTCCATATCACCAAAAAGTGGCGCCAAAGATAATTTCCGAATGCCAACGTTTGATATCCAAGAATAG

Protein sequence

MQCFQDASGPPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFILENSQVANARFQAAAAIRDAAIREWSFLTADVKRTLIRNPSAKILKEKQSSPEFIDESIHGNAPTQPSIDQRTGNSIRFNVNEVQDLFEVEKEDDIPLEREGHSISPKSGAKDNFRMPTFDIQE
Homology
BLAST of Lsi06G007760 vs. ExPASy Swiss-Prot
Match: Q9ESJ0 (Exportin-4 OS=Mus musculus OX=10090 GN=Xpo4 PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 4.1e-05
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 0

Query: 7  ASGPPN-LAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFILENSQV 66
          A GPP  +AQL+   + + +A  S+  +     AE   LS R++  P+  C+ ILE S+V
Sbjct: 5  ALGPPEVIAQLENAAKVL-MAPPSMVSNEQRQHAEHIFLSFRKSKSPFAVCRHILETSKV 64

Query: 67 ANARFQAAAAIRDAAIREWSFL 88
              FQAA AI +A +REW  L
Sbjct: 65 DYVLFQAATAIMEAVVREWVLL 85

BLAST of Lsi06G007760 vs. ExPASy Swiss-Prot
Match: Q9C0E2 (Exportin-4 OS=Homo sapiens OX=9606 GN=XPO4 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 5.4e-05
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 0

Query: 7  ASGPPN-LAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFILENSQV 66
          A GPP  +AQL+   + + +A  S+  +     AE   LS R++  P+  C+ ILE S+V
Sbjct: 5  ALGPPEVIAQLENAAKVL-MAPPSMVNNEQRQHAEHIFLSFRKSKSPFAVCKHILETSKV 64

Query: 67 ANARFQAAAAIRDAAIREWSFL 88
              FQAA AI +A +REW  L
Sbjct: 65 DYVLFQAATAIMEAVVREWILL 85

BLAST of Lsi06G007760 vs. ExPASy Swiss-Prot
Match: Q5ZMR9 (Exportin-4 OS=Gallus gallus OX=9031 GN=XPO4 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.7e-04
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 0

Query: 7  ASGPPN-LAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFILENSQV 66
          A G P  +AQL+   + + +A  S+  +     AE   LS R++  P+  C+ ILE S+V
Sbjct: 8  AGGAPEVIAQLENAAKVL-MAPPSMVNNEQRQHAEHIFLSFRKSKSPFAVCKHILETSKV 67

Query: 67 ANARFQAAAAIRDAAIREWSFL 88
              FQAA AI +A +REW  L
Sbjct: 68 DYVLFQAATAIMEAVVREWILL 88

BLAST of Lsi06G007760 vs. ExPASy Swiss-Prot
Match: Q499Y0 (Exportin-4 OS=Xenopus laevis OX=8355 GN=xpo4 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.5e-04
Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 0

Query: 13 LAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFILENSQVANARFQA 72
          +AQL++  + + +A  S+  +     AE   LS R++  P+  C+ ILE S+V    FQA
Sbjct: 11 IAQLESAAKVL-MAPPSMVNNEQRQHAEHVFLSFRKSKSPFAVCKHILETSKVDYVLFQA 70

Query: 73 AAAIRDAAIREWSFL 88
          A AI +A +REW  L
Sbjct: 71 ATAIMEAVVREWILL 84

BLAST of Lsi06G007760 vs. ExPASy Swiss-Prot
Match: Q802D3 (Exportin-4 OS=Danio rerio OX=7955 GN=xpo4 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 6.0e-04
Identity = 28/78 (35.90%), Postives = 43/78 (55.13%), Query Frame = 0

Query: 10 PPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFILENSQVANAR 69
          P  ++QL++  + + +A  S+        AE   LS R++  P+  C+ ILE S+V    
Sbjct: 8  PEVISQLESAAKVL-MAPPSMVSTEQRQHAEHIFLSFRKSKSPFAVCKHILETSKVDYVL 67

Query: 70 FQAAAAIRDAAIREWSFL 88
          FQAA AI +A +REW  L
Sbjct: 68 FQAATAIMEAVVREWILL 84

BLAST of Lsi06G007760 vs. ExPASy TrEMBL
Match: A0A1S3B9L0 (exportin-4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487293 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 7.5e-42
Identity = 93/118 (78.81%), Postives = 101/118 (85.59%), Query Frame = 0

Query: 1   MQCFQDASGPPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFIL 60
           MQ FQDASGPPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQ+PHPY TCQFIL
Sbjct: 1   MQGFQDASGPPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQSPHPYHTCQFIL 60

Query: 61  ENSQVANARFQAAAAIRDAAIREWSFLTADVKRTLIRNPSAKILKEKQSSPEFIDESI 119
           ENSQVANARFQAAAAIRDAAIREWSFLTADVKR+LI      +++   S   ++   +
Sbjct: 61  ENSQVANARFQAAAAIRDAAIREWSFLTADVKRSLISFCLCYVMQHASSPERYVQAKV 118

BLAST of Lsi06G007760 vs. ExPASy TrEMBL
Match: A0A0A0LY17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G680070 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.2e-41
Identity = 92/118 (77.97%), Postives = 100/118 (84.75%), Query Frame = 0

Query: 1   MQCFQDASGPPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFIL 60
           MQ FQDASGPPNLAQLQATMQAIELAC SIQMHINPSAAEATILSLRQ+PHPY TCQFIL
Sbjct: 1   MQDFQDASGPPNLAQLQATMQAIELACGSIQMHINPSAAEATILSLRQSPHPYHTCQFIL 60

Query: 61  ENSQVANARFQAAAAIRDAAIREWSFLTADVKRTLIRNPSAKILKEKQSSPEFIDESI 119
           ENSQVANARFQAAAAIRDAAIREWSFLTADVKR+LI      +++   S   ++   +
Sbjct: 61  ENSQVANARFQAAAAIRDAAIREWSFLTADVKRSLISFCLCYVMQHASSPERYVQAKV 118

BLAST of Lsi06G007760 vs. ExPASy TrEMBL
Match: A0A6J1DX24 (exportin-4 isoform X5 OS=Momordica charantia OX=3673 GN=LOC111024872 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 4.9e-41
Identity = 91/118 (77.12%), Postives = 102/118 (86.44%), Query Frame = 0

Query: 1   MQCFQDASGPPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFIL 60
           MQ FQD+SGPPN+AQLQATMQAIELAC+SIQMHINPSAAEATILSLRQ+PHPYQTCQFIL
Sbjct: 1   MQGFQDSSGPPNVAQLQATMQAIELACASIQMHINPSAAEATILSLRQSPHPYQTCQFIL 60

Query: 61  ENSQVANARFQAAAAIRDAAIREWSFLTADVKRTLIRNPSAKILKEKQSSPEFIDESI 119
           ENS VANARFQAAAAIRDAAIREWSFLTADVK++LIR     I++   S   ++   +
Sbjct: 61  ENSLVANARFQAAAAIRDAAIREWSFLTADVKKSLIRFCLCYIMQHASSPERYVQAKV 118

BLAST of Lsi06G007760 vs. ExPASy TrEMBL
Match: A0A6J1DVW5 (exportin-4 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024872 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 4.9e-41
Identity = 91/118 (77.12%), Postives = 102/118 (86.44%), Query Frame = 0

Query: 1   MQCFQDASGPPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFIL 60
           MQ FQD+SGPPN+AQLQATMQAIELAC+SIQMHINPSAAEATILSLRQ+PHPYQTCQFIL
Sbjct: 1   MQGFQDSSGPPNVAQLQATMQAIELACASIQMHINPSAAEATILSLRQSPHPYQTCQFIL 60

Query: 61  ENSQVANARFQAAAAIRDAAIREWSFLTADVKRTLIRNPSAKILKEKQSSPEFIDESI 119
           ENS VANARFQAAAAIRDAAIREWSFLTADVK++LIR     I++   S   ++   +
Sbjct: 61  ENSLVANARFQAAAAIRDAAIREWSFLTADVKKSLIRFCLCYIMQHASSPERYVQAKV 118

BLAST of Lsi06G007760 vs. ExPASy TrEMBL
Match: A0A6J1E0Q7 (exportin-4 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111024872 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 4.9e-41
Identity = 91/118 (77.12%), Postives = 102/118 (86.44%), Query Frame = 0

Query: 1   MQCFQDASGPPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFIL 60
           MQ FQD+SGPPN+AQLQATMQAIELAC+SIQMHINPSAAEATILSLRQ+PHPYQTCQFIL
Sbjct: 1   MQGFQDSSGPPNVAQLQATMQAIELACASIQMHINPSAAEATILSLRQSPHPYQTCQFIL 60

Query: 61  ENSQVANARFQAAAAIRDAAIREWSFLTADVKRTLIRNPSAKILKEKQSSPEFIDESI 119
           ENS VANARFQAAAAIRDAAIREWSFLTADVK++LIR     I++   S   ++   +
Sbjct: 61  ENSLVANARFQAAAAIRDAAIREWSFLTADVKKSLIRFCLCYIMQHASSPERYVQAKV 118

BLAST of Lsi06G007760 vs. NCBI nr
Match: XP_008443788.1 (PREDICTED: exportin-4 isoform X1 [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-41
Identity = 93/118 (78.81%), Postives = 101/118 (85.59%), Query Frame = 0

Query: 1   MQCFQDASGPPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFIL 60
           MQ FQDASGPPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQ+PHPY TCQFIL
Sbjct: 1   MQGFQDASGPPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQSPHPYHTCQFIL 60

Query: 61  ENSQVANARFQAAAAIRDAAIREWSFLTADVKRTLIRNPSAKILKEKQSSPEFIDESI 119
           ENSQVANARFQAAAAIRDAAIREWSFLTADVKR+LI      +++   S   ++   +
Sbjct: 61  ENSQVANARFQAAAAIRDAAIREWSFLTADVKRSLISFCLCYVMQHASSPERYVQAKV 118

BLAST of Lsi06G007760 vs. NCBI nr
Match: XP_011660266.1 (exportin-4 isoform X1 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 4.5e-41
Identity = 92/118 (77.97%), Postives = 100/118 (84.75%), Query Frame = 0

Query: 1   MQCFQDASGPPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFIL 60
           MQ FQDASGPPNLAQLQATMQAIELAC SIQMHINPSAAEATILSLRQ+PHPY TCQFIL
Sbjct: 1   MQDFQDASGPPNLAQLQATMQAIELACGSIQMHINPSAAEATILSLRQSPHPYHTCQFIL 60

Query: 61  ENSQVANARFQAAAAIRDAAIREWSFLTADVKRTLIRNPSAKILKEKQSSPEFIDESI 119
           ENSQVANARFQAAAAIRDAAIREWSFLTADVKR+LI      +++   S   ++   +
Sbjct: 61  ENSQVANARFQAAAAIRDAAIREWSFLTADVKRSLISFCLCYVMQHASSPERYVQAKV 118

BLAST of Lsi06G007760 vs. NCBI nr
Match: XP_022158373.1 (exportin-4 isoform X6 [Momordica charantia])

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-40
Identity = 91/118 (77.12%), Postives = 102/118 (86.44%), Query Frame = 0

Query: 1   MQCFQDASGPPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFIL 60
           MQ FQD+SGPPN+AQLQATMQAIELAC+SIQMHINPSAAEATILSLRQ+PHPYQTCQFIL
Sbjct: 1   MQGFQDSSGPPNVAQLQATMQAIELACASIQMHINPSAAEATILSLRQSPHPYQTCQFIL 60

Query: 61  ENSQVANARFQAAAAIRDAAIREWSFLTADVKRTLIRNPSAKILKEKQSSPEFIDESI 119
           ENS VANARFQAAAAIRDAAIREWSFLTADVK++LIR     I++   S   ++   +
Sbjct: 61  ENSLVANARFQAAAAIRDAAIREWSFLTADVKKSLIRFCLCYIMQHASSPERYVQAKV 118

BLAST of Lsi06G007760 vs. NCBI nr
Match: XP_038877264.1 (exportin-4 [Benincasa hispida])

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-40
Identity = 92/118 (77.97%), Postives = 100/118 (84.75%), Query Frame = 0

Query: 1   MQCFQDASGPPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFIL 60
           MQ FQDASGP NLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQ+PHPYQTCQFIL
Sbjct: 1   MQGFQDASGPSNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQSPHPYQTCQFIL 60

Query: 61  ENSQVANARFQAAAAIRDAAIREWSFLTADVKRTLIRNPSAKILKEKQSSPEFIDESI 119
           ENSQVANARFQAA AIRDAAIREWSFLTADVKR+LI      +++   S   ++   +
Sbjct: 61  ENSQVANARFQAAGAIRDAAIREWSFLTADVKRSLISFCLCYVMQHASSPERYVQAKV 118

BLAST of Lsi06G007760 vs. NCBI nr
Match: XP_022158368.1 (exportin-4 isoform X1 [Momordica charantia])

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-40
Identity = 91/118 (77.12%), Postives = 102/118 (86.44%), Query Frame = 0

Query: 1   MQCFQDASGPPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFIL 60
           MQ FQD+SGPPN+AQLQATMQAIELAC+SIQMHINPSAAEATILSLRQ+PHPYQTCQFIL
Sbjct: 1   MQGFQDSSGPPNVAQLQATMQAIELACASIQMHINPSAAEATILSLRQSPHPYQTCQFIL 60

Query: 61  ENSQVANARFQAAAAIRDAAIREWSFLTADVKRTLIRNPSAKILKEKQSSPEFIDESI 119
           ENS VANARFQAAAAIRDAAIREWSFLTADVK++LIR     I++   S   ++   +
Sbjct: 61  ENSLVANARFQAAAAIRDAAIREWSFLTADVKKSLIRFCLCYIMQHASSPERYVQAKV 118

BLAST of Lsi06G007760 vs. TAIR 10
Match: AT3G04490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38092.1); Has 75 Blast hits to 64 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). )

HSP 1 Score: 124.8 bits (312), Expect = 7.2e-29
Identity = 66/106 (62.26%), Postives = 82/106 (77.36%), Query Frame = 0

Query: 9   GPPNLAQLQATMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFILENSQVANA 68
           G  +LAQLQ+TM+AIELACS IQ++ NP AAEATILSL Q+P PY+ C++ILENSQVANA
Sbjct: 14  GAEDLAQLQSTMRAIELACSYIQINSNPVAAEATILSLHQSPQPYKACRYILENSQVANA 73

Query: 69  RFQAAAAIRDAAIREWSFLTADVKRTLIRNPSAKILKEKQSSPEFI 115
           RFQAAAAIR++AIREWSFL  D K  LI      +++   SS  ++
Sbjct: 74  RFQAAAAIRESAIREWSFLATDDKGGLISFCLGYVMQHANSSEGYV 119

BLAST of Lsi06G007760 vs. TAIR 10
Match: AT4G38092.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-21
Identity = 52/96 (54.17%), Postives = 69/96 (71.88%), Query Frame = 0

Query: 19  TMQAIELACSSIQMHINPSAAEATILSLRQAPHPYQTCQFILENSQVANARFQAAAAIRD 78
           T   ++++ S +Q++ NP AAEATILSL Q+P PY+ C++ILENSQVANARFQAAAAIR 
Sbjct: 23  TSCVLDISLSFVQINSNPVAAEATILSLHQSPQPYKACRYILENSQVANARFQAAAAIRK 82

Query: 79  AAIREWSFLTADVKRTLIRNPSAKILKEKQSSPEFI 115
           +AIREWSFL  D K  LI      +++   SS  ++
Sbjct: 83  SAIREWSFLATDDKGGLISFCLGYVMQHANSSEGYV 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9ESJ04.1e-0539.02Exportin-4 OS=Mus musculus OX=10090 GN=Xpo4 PE=1 SV=2[more]
Q9C0E25.4e-0539.02Exportin-4 OS=Homo sapiens OX=9606 GN=XPO4 PE=1 SV=2[more]
Q5ZMR92.7e-0437.80Exportin-4 OS=Gallus gallus OX=9031 GN=XPO4 PE=2 SV=1[more]
Q499Y03.5e-0437.33Exportin-4 OS=Xenopus laevis OX=8355 GN=xpo4 PE=2 SV=1[more]
Q802D36.0e-0435.90Exportin-4 OS=Danio rerio OX=7955 GN=xpo4 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A1S3B9L07.5e-4278.81exportin-4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487293 PE=3 SV=1[more]
A0A0A0LY172.2e-4177.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G680070 PE=3 SV=1[more]
A0A6J1DX244.9e-4177.12exportin-4 isoform X5 OS=Momordica charantia OX=3673 GN=LOC111024872 PE=4 SV=1[more]
A0A6J1DVW54.9e-4177.12exportin-4 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024872 PE=3 SV=1[more]
A0A6J1E0Q74.9e-4177.12exportin-4 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111024872 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_008443788.11.6e-4178.81PREDICTED: exportin-4 isoform X1 [Cucumis melo][more]
XP_011660266.14.5e-4177.97exportin-4 isoform X1 [Cucumis sativus][more]
XP_022158373.11.0e-4077.12exportin-4 isoform X6 [Momordica charantia][more]
XP_038877264.11.0e-4077.97exportin-4 [Benincasa hispida][more]
XP_022158368.11.0e-4077.12exportin-4 isoform X1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT3G04490.17.2e-2962.26unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G38092.12.5e-2154.17unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..118
e-value: 2.2E-8
score: 35.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..166
NoneNo IPR availablePANTHERPTHR12596:SF1EXPORTIN-4coord: 9..97
IPR044189Exportin 4/7-likePANTHERPTHR12596EXPORTIN 4,7-RELATEDcoord: 9..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G007760.1Lsi06G007760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051168 nuclear export
biological_process GO:0015031 protein transport
biological_process GO:0051169 nuclear transport
cellular_component GO:0005634 nucleus
molecular_function GO:0005049 nuclear export signal receptor activity