Lsi06G007440 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G007440
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionATP synthase subunit alpha, chloroplastic
Locationchr06: 13440963 .. 13442018 (+)
RNA-Seq ExpressionLsi06G007440
SyntenyLsi06G007440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTGTTGTAGGCATTCGAGGAAAGTGGTTGAAGAGGTTAAAAGAGAGAGAGGGCAGAGATTCTGATGGTCTATTGACGTGTTGTAGGTGCTGGAGGAATGGAGTTGACGGTGGCACTTTGTTGTATTCACCAATGGAGATTGTAGCACCAGGTGCATTGAGTATATTGATTAAATTGATTTTTGCTTCCATTTTTACGCAATAGAATGATTTTATTTAAATCGAAACTATTTTGAATTGGTAATGCTATTGTATTTATGGATGTTTGACTGCATTCATTGAGATTATAATCAATATGATTAGGAAATGAAGAGATGGTAATATTCTAATGTCGAATGAATTGTAAACGTACTTGGAAATGTGCATAGCTACCTCTGAATCTTGAAATTCGTATACCGACTTTGAAAATGAAGTTCATTGAGTTCATAAGATAGCAAACTTTGATTGAAATTATTGCAAACGTACTTAACTTCATATGATCTATTTTATGGGTTGATGTAGGTCATGTTTGTTGGAATAATTGGTATGTGACCATTCGTGTAGAGTTATATTGTCTTGTGAATGAACATGTTTTTTCATTCCAAATTGAAGAAAAGACATGATTATTCCAATGGTCACGAATTAGTCTATAAATATGTCTCTTCTTCTGAGTAGCTTTATCGAGATTAGGAGCGAATTGCACAAAGGCTTCTAATTTGGCAAATTGAGCCAATTCCAATTTTGATTTGTTGGCTACTTGTTTCATGGCTTTAATTTAAGCTGTAGATCCTACCCTGGAGATGGAAATACCCACATTAATAGCAGGTTTGATTCTAGAATTAAATAGATCGGCAAATAAGAAATGTGTCCATTGGTAATGGAAATTACATTAGTAGGAATATAAACTGAAACATATATTTTGATTCATTAGAAATTGGACAAGTAAGGAAATTTCTCGTTGAGTTACGTACTTACGTAAAAACGAATAAACCTCAGTTTCAAGAAATCATATCTTCCACGAAGACATTCACCAATGAAGCAGAAGCCCTTTTGAAAAAATCTATTCAGGAATAG

mRNA sequence

ATGACGTGCTGGAGGAATGGAGTTGACGGTGGCACTTTGTTGTATTCACCAATGGAGATTGTAGCACCAGAAATTGGACAAGTAAGGAAATTTCTCGTTGAGTTACGTACTTACGTAAAAACGAATAAACCTCAGTTTCAAGAAATCATATCTTCCACGAAGACATTCACCAATGAAGCAGAAGCCCTTTTGAAAAAATCTATTCAGGAATAG

Coding sequence (CDS)

ATGACGTGCTGGAGGAATGGAGTTGACGGTGGCACTTTGTTGTATTCACCAATGGAGATTGTAGCACCAGAAATTGGACAAGTAAGGAAATTTCTCGTTGAGTTACGTACTTACGTAAAAACGAATAAACCTCAGTTTCAAGAAATCATATCTTCCACGAAGACATTCACCAATGAAGCAGAAGCCCTTTTGAAAAAATCTATTCAGGAATAG

Protein sequence

MTCWRNGVDGGTLLYSPMEIVAPEIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE
Homology
[Close]
BLAST of Lsi06G007440 vs. ExPASy Swiss-Prot
Match: Q49L13 (ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=atpA PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-16
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFT EAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTEEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. ExPASy Swiss-Prot
Match: Q09X32 (ATP synthase subunit alpha, chloroplastic OS=Morus indica OX=248361 GN=atpA PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.4e-16
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTY+KTNKPQFQEIISSTKTFT EAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTKEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. ExPASy Swiss-Prot
Match: Q8S8Y3 (ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna OX=33113 GN=atpA PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.8e-16
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           E+GQVRKFLVELRTY+KTNKPQFQEIISSTKTFT EAEALLK++IQE
Sbjct: 450 EVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. ExPASy Swiss-Prot
Match: Q3C1H4 (ATP synthase subunit alpha, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=atpA PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.8e-16
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           E+GQVRKFLVELRTY+KTNKPQFQEIISSTKTFT EAEALLK++IQE
Sbjct: 450 EVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. ExPASy Swiss-Prot
Match: Q33C53 (ATP synthase subunit alpha, chloroplastic OS=Nicotiana tomentosiformis OX=4098 GN=atpA PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.8e-16
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           E+GQVRKFLVELRTY+KTNKPQFQEIISSTKTFT EAEALLK++IQE
Sbjct: 450 EVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. ExPASy TrEMBL
Match: A0A1P8LFL2 (ATP synthase subunit alpha OS=Citrullus mucosospermus OX=519315 GN=atpA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. ExPASy TrEMBL
Match: A0A2Z2CGF6 (ATP synthase subunit alpha, chloroplastic OS=Coccinia grandis OX=387127 GN=atpA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. ExPASy TrEMBL
Match: X2F439 (ATP synthase subunit alpha, chloroplastic OS=Lagenaria siceraria OX=3668 GN=atpA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. ExPASy TrEMBL
Match: A0A1P8LD69 (ATP synthase subunit alpha OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=atpA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. ExPASy TrEMBL
Match: A0A7T3USX6 (ATP synthase CF1 alpha subunit OS=Benincasa hispida OX=102211 GN=atpA PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. NCBI nr
Match: YP_009456131.1 (ATP synthase CF1 alpha subunit [Lagenaria siceraria] >QNM38516.1 ATP synthase CF1 alpha subunit [Lagenaria siceraria var. microcarpa] >AHM88686.1 ATP synthase CF1 alpha subunit [Lagenaria siceraria] >AHM88918.1 ATP synthase CF1 alpha subunit [Lagenaria siceraria] >AHM88976.1 ATP synthase CF1 alpha subunit [Lagenaria siceraria] >AHM89035.1 ATP synthase CF1 alpha subunit [Lagenaria siceraria])

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. NCBI nr
Match: YP_009317371.1 (ATP synthase CF1 alpha subunit [Coccinia grandis] >AOX48726.1 ATP synthase CF1 alpha subunit [Coccinia grandis] >AOX48811.1 ATP synthase CF1 alpha subunit [Coccinia grandis])

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. NCBI nr
Match: AHM90571.1 (ATP synthase CF1 alpha subunit [Lagenaria siceraria])

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. NCBI nr
Match: YP_010131079.1 (ATP synthase CF1 alpha subunit [Benincasa hispida] >QPZ75726.1 ATP synthase CF1 alpha subunit [Benincasa hispida] >QSQ72295.1 CF1 subunit alpha [Benincasa hispida])

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. NCBI nr
Match: YP_009325974.1 (ATP synthase CF1 alpha subunit [Citrullus lanatus] >YP_009348016.1 ATP synthase CF1 alpha subunit [Citrullus mucosospermus] >YP_009431542.1 ATP synthase CF1 alpha subunit [Citrullus amarus] >APW82446.1 ATP synthase CF1 alpha subunit [Citrullus lanatus subsp. vulgaris] >APD52465.1 ATP synthase CF1 alpha subunit [Citrullus lanatus] >APW82531.1 ATP synthase CF1 alpha subunit [Citrullus lanatus subsp. vulgaris] >APW82616.1 ATP synthase CF1 alpha subunit [Citrullus lanatus subsp. vulgaris] >APW82701.1 ATP synthase CF1 alpha subunit [Citrullus mucosospermus])

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLK++IQE
Sbjct: 450 EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKEAIQE 496

[Close]
BLAST of Lsi06G007440 vs. TAIR 10
Match: ATCG00120.1 (ATP synthase subunit alpha )

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-14
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 0 

Query: 24  EIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTNEAEALLKKSIQE 71
           EIGQVRKFLV+LRTY+KTNKPQFQEII+STKT T EAE+ LK+ IQE
Sbjct: 450 EIGQVRKFLVQLRTYLKTNKPQFQEIIASTKTLTAEAESFLKEGIQE 496

The following BLAST results are available for this feature:
BLAST of Lsi06G007440 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q49L132.0e-1693.62ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus... [more]
Q09X324.4e-1691.49ATP synthase subunit alpha, chloroplastic OS=Morus indica OX=248361 GN=atpA PE=3... [more]
Q8S8Y35.8e-1689.36ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna OX=33113 GN=atpA ... [more]
Q3C1H45.8e-1689.36ATP synthase subunit alpha, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=atp... [more]
Q33C535.8e-1689.36ATP synthase subunit alpha, chloroplastic OS=Nicotiana tomentosiformis OX=4098 G... [more]
BLAST of Lsi06G007440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1P8LFL21.5e-1495.74ATP synthase subunit alpha OS=Citrullus mucosospermus OX=519315 GN=atpA PE=3 SV=... [more]
A0A2Z2CGF61.5e-1495.74ATP synthase subunit alpha, chloroplastic OS=Coccinia grandis OX=387127 GN=atpA ... [more]
X2F4391.5e-1495.74ATP synthase subunit alpha, chloroplastic OS=Lagenaria siceraria OX=3668 GN=atpA... [more]
A0A1P8LD691.5e-1495.74ATP synthase subunit alpha OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=atp... [more]
A0A7T3USX61.5e-1495.74ATP synthase CF1 alpha subunit OS=Benincasa hispida OX=102211 GN=atpA PE=4 SV=1[more]
BLAST of Lsi06G007440 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009456131.13.1e-1495.74ATP synthase CF1 alpha subunit [Lagenaria siceraria] >QNM38516.1 ATP synthase CF... [more]
YP_009317371.13.1e-1495.74ATP synthase CF1 alpha subunit [Coccinia grandis] >AOX48726.1 ATP synthase CF1 a... [more]
AHM90571.13.1e-1495.74ATP synthase CF1 alpha subunit [Lagenaria siceraria][more]
YP_010131079.13.1e-1495.74ATP synthase CF1 alpha subunit [Benincasa hispida] >QPZ75726.1 ATP synthase CF1 ... [more]
YP_009325974.13.1e-1495.74ATP synthase CF1 alpha subunit [Citrullus lanatus] >YP_009348016.1 ATP synthase ... [more]
BLAST of Lsi06G007440 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00120.11.1e-1480.85ATP synthase subunit alpha [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038376ATP synthase, alpha subunit, C-terminal domain superfamilyGENE3D1.20.150.20coord: 18..70
e-value: 8.8E-9
score: 37.4
NoneNo IPR availablePANTHERPTHR48082ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIALcoord: 24..70
NoneNo IPR availablePANTHERPTHR48082:SF6ATP SYNTHASE SUBUNIT ALPHA, CHLOROPLASTICcoord: 24..70
NoneNo IPR availableSUPERFAMILY47917C-terminal domain of alpha and beta subunits of F1 ATP synthasecoord: 24..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G007440.1Lsi06G007440.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0005524 ATP binding
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism