Lsi06G006920 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G006920
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Basic leucine zipper/W2 domain protein
Location	chr06: 10952620 .. 10952844 (-)
RNA-Seq Expression	Lsi06G006920
Synteny	Lsi06G006920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGAGAGAAGAGCACTGGCTTAAAGGTCCTCTGGGTTTGGACTCTTGGCACTGCCGCCATTCTCGTTACAAGCTTTGTTCGGATGAGAATGAGAGATATGGAGAACATAATCAACTCCGATCAACAACCATCGCTTAACCACCAACAAACGTCTTCCACCGATTCCTTTCCCATCACCGATTCGTTTTCCGTCGATGAAGGAGACGCTTCACAGGTTTAG

mRNA sequence

ATGGCGAGAGAGAAGAGCACTGGCTTAAAGGTCCTCTGGGTTTGGACTCTTGGCACTGCCGCCATTCTCGTTACAAGCTTTGTTCGGATGAGAATGAGAGATATGGAGAACATAATCAACTCCGATCAACAACCATCGCTTAACCACCAACAAACGTCTTCCACCGATTCCTTTCCCATCACCGATTCGTTTTCCGTCGATGAAGGAGACGCTTCACAGGTTTAG

Coding sequence (CDS)

ATGGCGAGAGAGAAGAGCACTGGCTTAAAGGTCCTCTGGGTTTGGACTCTTGGCACTGCCGCCATTCTCGTTACAAGCTTTGTTCGGATGAGAATGAGAGATATGGAGAACATAATCAACTCCGATCAACAACCATCGCTTAACCACCAACAAACGTCTTCCACCGATTCCTTTCCCATCACCGATTCGTTTTCCGTCGATGAAGGAGACGCTTCACAGGTTTAG

Protein sequence

MAREKSTGLKVLWVWTLGTAAILVTSFVRMRMRDMENIINSDQQPSLNHQQTSSTDSFPITDSFSVDEGDASQV

Homology

[Close]

BLAST of Lsi06G006920 vs. ExPASy TrEMBL
Match: A0A1S3B9D1 (uncharacterized protein LOC103487223 OS=Cucumis melo OX=3656 GN=LOC103487223 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.9e-23
Identity = 62/76 (81.58%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1  MAREKSTGLKVLWVWTLGTAAILVTSFVRMRMRDMENII--NSDQQPSLNHQQTSSTDSF 60
          M REKS GLK+LWVWTLGTAAIL TS VRMR+RDMEN I  NSDQQPSL+HQQTSSTDSF
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60

Query: 61 PITDSFSVDEGDASQV 75
          PI DSFSVD+ D SQV
Sbjct: 61 PIPDSFSVDDADKSQV 76

[Close]

BLAST of Lsi06G006920 vs. ExPASy TrEMBL
Match: A0A5D3E426 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00800 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.4e-23
Identity = 61/75 (81.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 1  MAREKSTGLKVLWVWTLGTAAILVTSFVRMRMRDMENII--NSDQQPSLNHQQTSSTDSF 60
          M REKS GLK+LWVWTLGTAAIL TS VRMR+RDMEN I  NSDQQPSL+HQQTSSTDSF
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60

Query: 61 PITDSFSVDEGDASQ 74
          PI DSFSVD+ D SQ
Sbjct: 61 PIPDSFSVDDADKSQ 75

[Close]

BLAST of Lsi06G006920 vs. ExPASy TrEMBL
Match: A0A6J1JH17 (uncharacterized protein LOC111485045 OS=Cucurbita maxima OX=3661 GN=LOC111485045 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-20
Identity = 57/73 (78.08%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MAREKSTGLKVLWVWTLGTAAILVTSFVRMRMRDMENIINSDQQPSLNHQQTSSTDSFPI 60
          MAR+KS G+K+LWVWTLGTAAILVTS  R RMRDMEN+INSDQQPSL+HQQTSS      
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSS------ 60

Query: 61 TDSFSVDEGDASQ 74
          TDSFSVDEGD SQ
Sbjct: 61 TDSFSVDEGDVSQ 67

[Close]

BLAST of Lsi06G006920 vs. ExPASy TrEMBL
Match: A0A0A0LY21 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G656450 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.4e-17
Identity = 54/76 (71.05%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 1  MAREKSTGLKVLWVWTLGTAAILVTSFVRMRMRDMENII--NSDQQPSLNHQQTSSTDSF 60
          M REKS GLK+LWVWTLGTAAIL TS VRMR+RDMEN +  NSDQQ SL+HQQTSS    
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLHHQQTSS---- 60

Query: 61 PITDSFSVDEGDASQV 75
            TDSFS+D+ D SQV
Sbjct: 61 --TDSFSLDDADKSQV 70

[Close]

BLAST of Lsi06G006920 vs. ExPASy TrEMBL
Match: A0A6J1EZE2 (uncharacterized protein LOC111440489 OS=Cucurbita moschata OX=3662 GN=LOC111440489 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.0e-15
Identity = 49/73 (67.12%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 1  MAREKSTGLKVLWVWTLGTAAILVTSFVRMRMRDMENIINSDQQPSLNHQQTSSTDSFPI 60
          MAREKS GLK+LWVWTLGTAAILVTS  RMRMRDME+II SDQQ    HQQ  ++     
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSS---- 60

Query: 61 TDSFSVDEGDASQ 74
          TDSF V EG+ S+
Sbjct: 61 TDSFFVGEGETSE 69

[Close]

BLAST of Lsi06G006920 vs. NCBI nr
Match: XP_038878707.1 (uncharacterized protein LOC120070883 [Benincasa hispida])

HSP 1 Score: 134.8 bits (338), Expect = 3.0e-28
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MAREKSTGLKVLWVWTLGTAAILVTSFVRMRMRDMENIINSDQQPSLNHQQTSSTDSFPI 60
          MAREKS GLK+LWVWTLGTAAIL+TS  RMRMRDMENIINSDQQPSL+HQQTSSTDSFPI
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILITSVARMRMRDMENIINSDQQPSLHHQQTSSTDSFPI 60

Query: 61 TDSFSVDEGDASQV 75
          TDSFSVDEGDASQV
Sbjct: 61 TDSFSVDEGDASQV 74

[Close]

BLAST of Lsi06G006920 vs. NCBI nr
Match: XP_008443690.1 (PREDICTED: uncharacterized protein LOC103487223 [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 3.8e-23
Identity = 62/76 (81.58%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1  MAREKSTGLKVLWVWTLGTAAILVTSFVRMRMRDMENII--NSDQQPSLNHQQTSSTDSF 60
          M REKS GLK+LWVWTLGTAAIL TS VRMR+RDMEN I  NSDQQPSL+HQQTSSTDSF
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60

Query: 61 PITDSFSVDEGDASQV 75
          PI DSFSVD+ D SQV
Sbjct: 61 PIPDSFSVDDADKSQV 76

[Close]

BLAST of Lsi06G006920 vs. NCBI nr
Match: KAA0038255.1 (hypothetical protein E6C27_scaffold270G001040 [Cucumis melo var. makuwa] >TYK30654.1 hypothetical protein E5676_scaffold84664G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 61/75 (81.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 1  MAREKSTGLKVLWVWTLGTAAILVTSFVRMRMRDMENII--NSDQQPSLNHQQTSSTDSF 60
          M REKS GLK+LWVWTLGTAAIL TS VRMR+RDMEN I  NSDQQPSL+HQQTSSTDSF
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLHHQQTSSTDSF 60

Query: 61 PITDSFSVDEGDASQ 74
          PI DSFSVD+ D SQ
Sbjct: 61 PIPDSFSVDDADKSQ 75

[Close]

BLAST of Lsi06G006920 vs. NCBI nr
Match: XP_023516467.1 (uncharacterized protein LOC111780326 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-20
Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MAREKSTGLKVLWVWTLGTAAILVTSFVRMRMRDMENIINSDQQPSLNHQQTSSTDSFPI 60
          MAR+KS G+K+LWVWTLGTAAILVTS  R RMRDMEN+INSDQQPSL+HQQTSS      
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSS------ 60

Query: 61 TDSFSVDEGDASQ 74
          TDSFSVDEGDASQ
Sbjct: 61 TDSFSVDEGDASQ 67

[Close]

BLAST of Lsi06G006920 vs. NCBI nr
Match: XP_022987500.1 (uncharacterized protein LOC111485045 [Cucurbita maxima] >KAG7023767.1 hypothetical protein SDJN02_14793, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.8 bits (268), Expect = 4.0e-20
Identity = 57/73 (78.08%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MAREKSTGLKVLWVWTLGTAAILVTSFVRMRMRDMENIINSDQQPSLNHQQTSSTDSFPI 60
          MAR+KS G+K+LWVWTLGTAAILVTS  R RMRDMEN+INSDQQPSL+HQQTSS      
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLHHQQTSS------ 60

Query: 61 TDSFSVDEGDASQ 74
          TDSFSVDEGD SQ
Sbjct: 61 TDSFSVDEGDVSQ 67

[Close]

BLAST of Lsi06G006920 vs. TAIR 10
Match: AT1G06010.1 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-12
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 1  MAREKSTGLKVLWVWTLGTAAILVTSFVRMRMRDMENIINSDQ-QPSLNHQQTSSTDSFP 60
          M REKS GLK+LWVWT+GTAAILVTS VR RM+DM+ ++N +Q Q    +Q  S+ DS  
Sbjct: 1  MGREKSPGLKILWVWTIGTAAILVTSVVRTRMQDMQTMMNQNQEQAPKENQNGSAGDSSV 60

Query: 61 ITDSFSVDEGD 71
          + D   + E D
Sbjct: 61 LMDETVLPESD 71

The following BLAST results are available for this feature:

BLAST of Lsi06G006920 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G006920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B9D1	1.9e-23	81.58	uncharacterized protein LOC103487223 OS=Cucumis melo OX=3656 GN=LOC103487223 PE=...	[more]
A0A5D3E426	5.4e-23	81.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1JH17	1.9e-20	78.08	uncharacterized protein LOC111485045 OS=Cucurbita maxima OX=3661 GN=LOC111485045...	[more]
A0A0A0LY21	3.4e-17	71.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G656450 PE=4 SV=1	[more]
A0A6J1EZE2	7.0e-15	67.12	uncharacterized protein LOC111440489 OS=Cucurbita moschata OX=3662 GN=LOC1114404...	[more]

BLAST of Lsi06G006920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878707.1	3.0e-28	91.89	uncharacterized protein LOC120070883 [Benincasa hispida]	[more]
XP_008443690.1	3.8e-23	81.58	PREDICTED: uncharacterized protein LOC103487223 [Cucumis melo]	[more]
KAA0038255.1	1.1e-22	81.33	hypothetical protein E6C27_scaffold270G001040 [Cucumis melo var. makuwa] >TYK306...	[more]
XP_023516467.1	1.4e-20	79.45	uncharacterized protein LOC111780326 [Cucurbita pepo subsp. pepo]	[more]
XP_022987500.1	4.0e-20	78.08	uncharacterized protein LOC111485045 [Cucurbita maxima] >KAG7023767.1 hypothetic...	[more]

BLAST of Lsi06G006920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06010.1	1.9e-12	53.52	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G006920.1	Lsi06G006920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane