Lsi06G006680 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGTCGTCGCCGACGTTCTATGTCATTAATCTGTTCGTCATGTGTCAGGCGTCAGTTCCGTCTGCTCGCTTTGAGGTTCTCTTCTCTGTTCGTTCTCAGATTACTTCATCTAGCGGTGCGCACCCATAATTCCAACTACTATATATTTTTAGATGAATTTAATCTCAAGGGATTAGGGATTTTTGTTGGGAGTGAAAGTGTTAATTAGTCACTTTTTATGAATATCTTAGGTTGTTTTGAGTGTTGAAGTGAAATTTAGGCACTTTTTAGGTAGGTTTGGGAGTCAAAATAATAGTTGTATACTTTTTAGGTTGTTTTAATGGATGAAATTGATAACTAGGCACTTTTTATGATTGTTTTAGCTTGTTTTAAGAGTCAATGTGACACTTTGGAGCTTTTTAGTTTTTGTTTGAAGTCAAAGTGTTAATTAGTCACTTTTTATAAATATCTTAAGTTGTTTTGAGTGTTGAAATGAAAATTATACACTTTTTAAGAACATTTTAGAAGTCAAAATGATTGTTATACACTTTTTAGGTTGTTTTAATGGATGGAATTGATAACTAGGCACTTCTTATGATTGTATTAGCTTGTTTTAAGACTCAAGGTGACACTTTGGAGCTTCCTAGCTTTTGTTGGGAATCAAAGTGTTAGTTAGCCACTTTTTATGAATATCTTAGGTTGTTTTGAGTATTGAAGTGAAATTTAGGCACATTTTAGGAACTTTTTTGGTAGGTTTGGGAGTCAAAATAATTGTTATATACTTTTTAGGTTGTTTTAATGGATGGAATTGATAACTAGACACTTTTTATGATTGTTTTAGCTTATTTTAAGAGTCAATGTGACACTTTGGAGCTTTTTAGTTTTTGTTTGGAGTCAAAGTGTTAATTAGCCACTTTTTATGAATATCTTAAGTTGTTTTTAGCGTTGAAATGAAACTTATACACTTTTTAAGAACTTTTTAGGAGTCAAAATGATTGTTATATACTTTTCAGGTTATTTTAACGGATGGAATTGATAACTAGGCACTTTTTATGATTGTTTTAGCTTGTTTTAAGAGTCAATGTGACACTTTGGAGCTTTTTAGCTTTTTTTTGGAGTCAAAGTGTTAATTAGCCACTTTTTATGAATATCTTAAGTTGTTTTGAGTGTTGAAATGAAACTTATACACTTTTTAAGAACTTTTAGGAGTCAAAATGATTGTTATACACTTTTTAGGTTGTTTTAATGGATGGAATTGATAACTAGAGATTTGGGAACTAAATTATAATACATTTAAGGTTGCCATTTTTAAATGTGATTGGGTTGAGAACAACAATGGTATCAAAACTGACGAGCTTGGTTTTGTGTTAGTTGACTTAAATAGAATAGGCCACAAGTTTGATTCTTTCATACTAGCAACTCAAGCAAGACAAGTGTTTTATGTTGAGGATCCAAGTGATGTTCGATGGTTTATTGTTCTTACTCCACCACAAAGAGATTTTGAGGATCAACACAATGACGACGAACTTGGAGATACTATTCTACATTGTCAAGGAATACCTAATACAATTGGTGTGGATATTGAATCTAGAATTGATTTGGATGAGAACATTTCAACATATGTACGAGTAGATTGTGAGGGCACATGGATTCCTAAAGAGTAAATTTTTTGGTGGGTTTTCACTTACTAAATGTTACAATTTTCTTGTATCTGACATCTAACTTAATTTTATTTTGTTTGTCAGGCTATTTCTTATACCATGGAGCTAGGAAGTCATGAGGACTTGGAGCTCCGTTTGGATGATGTTACTATTGGTGTGGATAATGACAATGTGGAAGTGAAGCAAGATGAAGCACTTGAGAAAAAGAAAAGGCGAACACGAGGACCAACTATTATGCATGTTGTAACAAAAAATAGGAGTGCAGGAGAGAAATGGTTGGTACAATATAATGATGATGGAGTACTGATTGGAGACAATGGATATAAGTTAAAATCTTTATTGGATCTAGTGTCCATCATCACATCCCGATTACATATAAGTCTTGGCAGCATGTACCAACTGAGTTGAAGGAAAAAATATATAATATGGTTGAGGTATGTATACTCTTTGATACTATTGTTGATGTATTTTACTAATATTTTACTTAAATAATAATAATCAAGTTTTTAAATGTGTAGGGTGCCTTCATAATTGATGGTAGAACTAAGAAGGATGTTATCAGAACTGCAGGCATTACATTTCGTCAATTCAAGAGTTGGCTAACGACACAACATATTATCCCTTTTAAGGATGAACTTCAACTTTTGTTACATCCACCATCAATGTACTCCCACATAATTGAAACACATCATTGGCTAGAGTTTGTCAATTCAAGATTATCTCCAAAGTTTGAGTGAGGTATATCCCTTTTCACTTCTAAGAACATCAATATTAGCCACTTTTGTGCCATTTTTAGTTTGAATTATTAAATTTATATAGGAAGTGAGAAGTAAACAACAAGAACGTAGAAAGAAGCATAAGTATGATCATCAGATGTCCAGAAAAGGTTATGCAAATCTTGCCAAAGAAATGGTAAGAATATTACATTATGTTACAAATATTAATTATTAAATATAATTTAAATATTATGTATTTAATGTTATATTTTTTATGCAGAAAACTTCCAACGAAAGTGATTTTGGACGAGCCAATATGTGAAAAAAAAGCTCGGACAAACAAAAAGGGAGAATACGTCAATAAGAGTGTCCAACAAGTAGTCAATCGAATAGTAAGATCAATAGTATTACATTTGAATGAAATTATATTGAATATTGTAATATATATTTAATTTCTTTTTAGGATGAGATCATAAAAAATACAGATCTAGTTGCCAACAAAGATCCTTCACCCAATGATGCTTTGAGTCAAGCTTTGGGTACTCCAGAACAAGGTGGACGAGTACGTGGGGTGGGTGCTTTCCTTACACCTACAATGTACTTTCACACAGCGAAATGGAGTTAAAAAAAAGATGCAAACAAAGAAATTGTTGACGAAAATGAAGCACTTCGTCAACGCATTATGGAATTGGAAGATCAAATTCAAAAGACGCAAGCATCTGAGCAAGGAAGTTGCTCCAAGCATAAAATCGAAGAGAAGCAAACATCAAATAAGGTGAATTCAGTTAGTCCCATGTTCTATCTTATTTGTGAAGTAAAGTTACTATACTTATGAAATTATAACTTGGATAATTTAGGAGAAAGTTCCAAGGAAGATCGCAAAGGAGAAAGAAATTGTTAGTACACCAATAACACATAAGGCAAAAAAGAAGAAAGCTATTAGTGTACCGCCAATAGCTCATGAGGCAATGGAGAAGGAAGCTATAGTGTGCCGCTAA ATGCGTCGTCGCCGACGTTCTATGTCATTAATCTGTTCGTCATGTGTCAGGCGTCAGTTCCGTCTGCTCGCTTTGAGAAAACTTCCAACGAAAGTGATTTTGGACGAGCCAATATGTGAAAAAAAAGCTCGGACAAACAAAAAGGGAGAATACGTCAATAAGAGTGTCCAACAAGTAGTCAATCGAATAGATGAGATCATAAAAAATACAGATCTAGTTGCCAACAAAGATCCTTCACCCAATGATGCTTTGAGTCAAGCTTTGGGTACTCCAGAACAAGGTGGACGAGAGAAAGTTCCAAGGAAGATCGCAAAGGAGAAAGAAATTGTTAGTACACCAATAACACATAAGGCAAAAAAGAAGAAAGCTATTAGTGTACCGCCAATAGCTCATGAGGCAATGGAGAAGGAAGCTATAGTGTGCCGCTAA ATGCGTCGTCGCCGACGTTCTATGTCATTAATCTGTTCGTCATGTGTCAGGCGTCAGTTCCGTCTGCTCGCTTTGAGAAAACTTCCAACGAAAGTGATTTTGGACGAGCCAATATGTGAAAAAAAAGCTCGGACAAACAAAAAGGGAGAATACGTCAATAAGAGTGTCCAACAAGTAGTCAATCGAATAGATGAGATCATAAAAAATACAGATCTAGTTGCCAACAAAGATCCTTCACCCAATGATGCTTTGAGTCAAGCTTTGGGTACTCCAGAACAAGGTGGACGAGAGAAAGTTCCAAGGAAGATCGCAAAGGAGAAAGAAATTGTTAGTACACCAATAACACATAAGGCAAAAAAGAAGAAAGCTATTAGTGTACCGCCAATAGCTCATGAGGCAATGGAGAAGGAAGCTATAGTGTGCCGCTAA MRRRRRSMSLICSSCVRRQFRLLALRKLPTKVILDEPICEKKARTNKKGEYVNKSVQQVVNRIDEIIKNTDLVANKDPSPNDALSQALGTPEQGGREKVPRKIAKEKEIVSTPITHKAKKKKAISVPPIAHEAMEKEAIVCR Homology
BLAST of Lsi06G006680 vs. ExPASy TrEMBL
Match: A0A5A7UBQ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001310 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 4.1e-11 Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 0
BLAST of Lsi06G006680 vs. ExPASy TrEMBL
Match: A0A5A7TM46 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00590 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 6.9e-11 Identity = 46/84 (54.76%), Postives = 57/84 (67.86%), Query Frame = 0
BLAST of Lsi06G006680 vs. ExPASy TrEMBL
Match: A0A5A7TC55 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold540G00090 PE=3 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 4.5e-10 Identity = 41/73 (56.16%), Postives = 48/73 (65.75%), Query Frame = 0
BLAST of Lsi06G006680 vs. ExPASy TrEMBL
Match: A0A5A7U2V5 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00040 PE=3 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08 Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 0
BLAST of Lsi06G006680 vs. ExPASy TrEMBL
Match: A0A5D3CXE6 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00350 PE=4 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08 Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 0
BLAST of Lsi06G006680 vs. NCBI nr
Match: KAA0053313.1 (uncharacterized protein E6C27_scaffold102G001310 [Cucumis melo var. makuwa]) HSP 1 Score: 77.8 bits (190), Expect = 8.4e-11 Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 0
BLAST of Lsi06G006680 vs. NCBI nr
Match: KAA0042505.1 (transposase [Cucumis melo var. makuwa]) HSP 1 Score: 77.0 bits (188), Expect = 1.4e-10 Identity = 46/84 (54.76%), Postives = 57/84 (67.86%), Query Frame = 0
BLAST of Lsi06G006680 vs. NCBI nr
Match: KAA0040673.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa]) HSP 1 Score: 74.3 bits (181), Expect = 9.3e-10 Identity = 41/73 (56.16%), Postives = 48/73 (65.75%), Query Frame = 0
BLAST of Lsi06G006680 vs. NCBI nr
Match: XP_031741710.1 (uncharacterized protein LOC116403905 [Cucumis sativus]) HSP 1 Score: 69.7 bits (169), Expect = 2.3e-08 Identity = 38/63 (60.32%), Postives = 42/63 (66.67%), Query Frame = 0
BLAST of Lsi06G006680 vs. NCBI nr
Match: KAA0049568.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa]) HSP 1 Score: 69.3 bits (168), Expect = 3.0e-08 Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|