Lsi06G005950 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G005950
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein RALF-like 9
Locationchr06: 8154598 .. 8163741 (+)
RNA-Seq ExpressionLsi06G005950
SyntenyLsi06G005950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCGTATGAGTGTTACTTGCCCCTTGTGTCGGAATTCCCCTGCTCTAACTCTTATTGCTAATCCTTTCTCTAAGATTGTGCCTCTGGCTCCCAATCCCAGGTGATCTTCTTCTTCCTCTTCACAAAATTTTTAGGGTTAGAGTTTATGATTTTTCTCTTTGAATTGGTGCATGTGTTTACTTTTGACCATTGATTTATGATAGATATGGGAACCTCCTGGATTATCTCTAGTGTTTAGTCATTATGTAAAGTTGGAAAAGTTTCTAATAAAGATCGACTCAAACATTTAATTTTGTGTCTGATAAATTAATAACATCGGTTCTTTAATACTTACCTTACATAAAAAGATATAACTGGAGAGCATGTACTTGAATTTTGATTATGATCTTTCTTTACTGATATACCAAGTGAGGTTTATCGGATCTTGGATGTAGTTTAGGCAGACTAGAGAAGTGGTAGGAGGTAAAACTTTCGTCACTTTTGACTTTGATATTGAAGAATGTATTTTATTTCGTTTCATTCATTGCTTTGTTTTTTTGCAAGTTGTGGAGCTACAAAAGCTAATTCTAGCTCATAATAATATTCAATTGTTGAATGAAGAATTGGAGAATTTGTCTTCTCTTGTTGTATATAAAATGTTAGTGACAACAAACTTTCTAAATTACCAGCTGCAATTAGAGAGTGAATTCTGATTTAGTGTTTTCCTTTCTCGTTTCTTAGACAAAATTTTAATATGGTTATATTTTGGTAATGGTTATGTTGTTATTAATGCACTTCTGCAGGGCTTCGATGTTTCCTTCGATTCATTAATGAGAATACTTGAGGAAATTGGATCCACCACTTCACTTGTCAAGTATTCATTTTCCCTTCTACATCTCCCCTGTTGATTAGAATTTATGAAAAGACAATCTAGTAGAATATTTTCTGAAATGGGAGATTGTTGATGAATTCATTTGCTTTAAGTTTGTACTTTTTTTTATTTTATTTTATGAGCATCTAGGGGAATGGTATTACAAGGACATAAGGAGCTGAACTAATTGAAGTCTGCTAAAAACTCAGTTCTTCTTTATTTGAAGTAATTATCAGCTTTGCAACTTTTTTGCAGACTTGTACATACATTATTAATTTTCCTTCCTTCACATAAGTTTTTTCTTTTCTTGACAACAGAAAAAATATGTGATATTTACTATTCCTCCAATTGTTCACTTCTAAATGTAGTTCCTACATGTAAAGAAATCCTTTTTTAGTTTTATAAATCCATCTTCATCTATTGATTTTTTTTTTTTAATATTAATTGACCTAAGGAACTATTAGGTGGACTTGGAAGGTGTTTAGATATGTTGGATCTTAAGGTAATTGTTTCTTACTGTGATCTATGCTCAGTTCCACAACCCAAAATGGTATGCTTCTTGGCCACTTTACCTTGGCCAACCTTGTGGGGTCCTTTCCATTTCTTAGTATAGTAACTCTCTTGAACTTGCAAATTGTAATACCTCCTCACAAGTATAATGAGATTATAAGACCTGTTTTCTTTTGCCATCTCTTGTTAAGTTTATTCTTGCTCATATCTTAGACGATAAATGTTGATTAAGTTTATCCTTGCTCATATCCTAGATGATAAATGTTGATTGTACTCTCTCTTAAGCTAAATTTGCCTTTATTTGATACGAAAGTTACACGGTTGATTGAGTCGGTTGAATTTGATACATTTGATGGTTAAACCAAAACCTACAAGTTATTGGTTTTTAAAAATATTAGGGCGAGGGTTGAGATATACCCACTAATAATTAATGGTAAAAGGACTCTTATTTATTTGCTTTTAGCATAATGTATCTAGCAAGATTTCTTAGTGTACCCTTCCTCAGGCATCAAACAGTATAAACTATTTGTAAATAGTTTATCTATATTTGTAAATAGTTTGAATCATTTTGCTATATTCGAAAATAGCCTTAAAAAGTATACTATGACTAAATTTTTGTTTTCTTATTGTTATTTTTGTAATATTTGTAAGGCCAACTTTGCATCATACATTGAAACACAAAATTAATAAAATTATACTTAGATTTTTATATGGTAAATTAGGTGTTCTCTTTATTTTCTTTTGTGGATTGACTTTCTAATTATGATATAATTTTGGAGACATTTGAATTCTGTTCGTCAATCCTCCTCTCTTCGATTGGAGCTTATTATAATTTCGTGTTATTGGTCTCTTTTTCTATTTTGTTCCTCTAATATTTTTATTTGGTATATAATGGCGTGCAAGTATATAAGAGAAAACAGTTAATGTATTTTAAATTGTTGTGTCGTGCAGAGTTGGTGCAGTAGGTCCAAATATTTCAGTTTTGGTGAAGCACTTGGGATTTTCTAAGTTTAAGACTTCCAATTTGTAAGATAATTTAGTTGCTAACACTAGTACTAAATTGGGCTTTAATGTCGGTTTAAAACTGACATTATATAGGTACAATGTCGGTTGTCAACCGACATCGAAAATCATAAAGCAGAATTGTTCTCGTTGCAGAAGAATCAGACATGGTCATTGGTTCCAAAGCCTCCTAATCAGAAACTCATTCAGTCAAAGTGGATTTATAAAATCAAACCAGGTACATGAGGTGACAGTAAGCCTAGGTATAAGGTTAGGCTGGTGGACAAGGACTACACTTAGAAGGAGGGAGTTGACTTTCATGAGATTTTCTCTCCAATGGTGAGACATTCGTCCATTAGATTGTTTTTATCTATTGTTGTTCACTTTGATAAGTTTCTTGAATTGATGGACGTCACCACAACATTCCTTCATGGAGAATTGGAGATGGCTTAACTTAAGCGCTATGAGGTGAAGGAAAAGGAAGACATGGTTTGTCGTCTTCATAAGTCCATCTATGGACTGAAGCAATCGCCGAGACAGTGGTATATTAGGTTTGATACCTTTATCTTAAAACAGGGGTTTCACAGGAGCTCATATGATGCATGTGTTTACTAAAAACTATCTGAAAAGGGTACATATATTTATCTACTGTTATATATAGATGATATGATATTGGTGTCTAAGGATAATGCTGAAATCTATGAACTCAAGAGACAATTGAGTAGTGAGTTTGAGATGAAAGATCTAGAAGAGTTGAAAAAGATCTTAGGCATGAATGTTAAAATAGATAGGGAGAAAGATTTGTTAACCATTTTGTAGGAGAGTTATGTGCATAAACTGCTTGAGAAGTATAATATCTCTGGTTGTAAGGCAGTTTCGACACCCTTAACATCTCACTTTAGATTTTCTTCGTCTCAGTGTCGTATTACTAAACAAGAAAGGTTAGAGATGTCTAATATTCCCTATTGTAATGTTGTTGGAAGCATTATGTATCTGATGATTTGTACTAGGCCTGACTTGGGTTATGCTATGAGTATGATAAGTAAGTTTATGTCAAATCTTGGGAAGGATCATTGGAACGCAGTTAAATGAGTGCTTTGATATTTGAAAGGCAGTGTTAGTGTATCATTATGTTTTAGTAGAGATTGTGATAAATCAGTACTATTGGAAGGCTTCACAGATGCAAATTATGCTGCAAACCTTGACAAAAGAAGGTTTTTATCTGGTCACATTTTTCATTTGTATGGTAATGTGGTCAGTTGGAAAGTTGCTCTATAGCTAATTGCTACTTTGTCTACTACTAAGTTAGAGTATACTTCAGTTGGTGAAGTAGTGTTATTGAAGAGAATAGTTGGTGAGTTGTTGTCGCAGGAGTTCTTTCCTATCATCCGTTGTGGTAGTCAGAGTGCTATCCATCTTGCGAAGAATCCATCTCATTGTGAACGGTCAAAGCATATCGATTTTAAATTTCATTTTATCAGAGAGGTTGTTGCTCAAAAAGATACTGAATTAGTCAAAGTTCATACAGTTGAGAATTTGTCAGATATGTTAACTAAGGTTCTTCCAGCTCATAAGTTTAAATACATGTTCAATGAGCTGAATATTAAATCTAGATGATAGGGTGATTGATTGGAGATTCAGTTTGGTGCCTTAAAAATTTTTGTTATGAGGGAGATTTGTTGAAAATAACAAGTTATTTAAGTGGACTTCTCATTAAAGGCATTTAAGTAAATAAGGCCAGTGATATTTATGTAAATTGTGCATGATGCCAATTTTGTGAATAAGTTGATCTTCATCAACTTAGGGTCTCCATCGTGATTCAATTTAAGGAGAAGAAAAGAGGGCAGTTGAAATATAGAAAACACACACTTTTGGAGAGAGAGAAAACTCAACAGAGAGAGAGAAGAAGCCGTAAGTATGGGGTTTTTCGATCAGCCGAGCTTGTCGTCCTTGCTTGTTGGACGACAGGAGCGCAACAACGTGGGTTCTTCGGTTACATCACGAGTGTTCTCGTTCTGCAGAGACGTTGTTTGATGCGTGGGTCTTCGATTTGGAGAGTTTCGTTTGGCGTGTGGGTCTCGATTTCAAGGGCTGGTTTCAGACGTTCTTGGCCTCGATTTTATAGGCTATTTTCTGTGCGTGGGTCTCTCGGTACAGTGGGTGCTTGGCCGGCACTAAAGTTGGGTCCGACAAGCAATTGCTCAAGCGATTGGTCTTGGTTAAGAGGCAAAATAATCGTGGTTTTATTCTTCTTGAATGGATAAATTGCATATTGTTGATTCTTTCTAATTTCTGTAATTGTGATTTCTCTTAATAAAATCATTCCAAGATGGTTATCAAAGTGGATGTAGACCAAATTGGTCAAACCACTATATATCGTTTTTTTTATCGCCTGCAATTTATTTTGCTGGCTATTGCTTCTATTTGGGTGTATTATGAAATCTGTTTATATTTTACAAAGAGATTTAATTGCAATTGATTTTGTCAAATTGTTTGTTGTACAATCATAGAATTTTTTTCTTCCAAACTCTTAAAGTGATTTTTATCTATTTAAAACTCTTAAAAGGGGTTTTCATCTTTCTTGAGTAAAATAGTTGGTTTTTCTTAGCCAAATTTCAAATTCCAAAAACTATTTTTTTTAGTTTTTAAAACTTGGCTTGATTTTTGAAAATATTGACAGAAAGTAGATAATAAAGCCCTTCTCCACTTCTCTTAAACAAGAATCAGAGAAATAATACAACTTATGTCAATGTCACAACATGAAACACCTTTTACAATATCTTATAACATAGTCTAGATGACTACTTACTACAAGCTTTGATCACTGGAATAACAAAGTGGCTACAAATGCATGAAGATTATGAACAACCACATGAAAAAACAATTTACTCCCCAAACTATATTGCCACAAAAAAACAACCAATAATTTCATAAGTCTCCCCCTCTAGCTGCCAGCAAGAAACTGTCGAGAAGTAGAGAACAATCACAAATAATAAGCCAAATCAACATCCCCAGCCTTAGCCCCAGAGCTAGATAAACCATCAACCCAAGGAATGGACGACCTTAGCATCTGAAAGAGAGCATCCACCTCCTCCTTGTGCTTAACCACATTCCAAATAAAAGCAGAAAATGCATTTGACTCGGATGCAAGGACACACATAATTCGATTCCATAGCTGAGGTGGAATGAGAAGACCTGTATCCCCAACTGAAATATCAAGGACGAGAATCTTCAGCACTAGGTGGTGGAATGTCAATGTCGGGAACATGACAAGCTTGTAACAGTATATAAATATAAGTAATTGGAAGGAAGGTGGACCAAGAGTGTCAACATGAGACAAGATATTTAGGTTTTGAGAAAACAGGATACTACAGATCAATCATGGAAAACAAATAGGAAGTTTAACAACATATGAATCAACATGGCGAAGAATCACTAGTATAAAACTGGTCTATAATGTCAGTCGAAAACAGACATTATAAGGGTACGATGGTTGTCAGGCGACTAACTTTGAGGAAGATGCTATTAAAGGTGTTCAATGTCGGTCACTGTTGCATTCATAAAGTGCAACGCATAGACCATGTATACATGCGTACGTCGTCACAAACTGACTGATGTTATGAATTACCATGCGATGAACACAAGCTTTATCTGATTTGAGTCCAAATATAAACTTAAATGAGTAACCTGGTGAGTCCAGGGTCGAACTCAGGGACTTTTGTGCTTTTGTATTTTTAACCATGCGATGAATGCTTTATACATAGGGGGGAAAGAAATATGTTACTAACCTACAATATTAATTACAATACGAGAGAGCTAGGCGACGAGCAAAGGGATTTGTGATGTTTGTCAATGGAGTATTTCTCTACGCAAGTAGCATGCGATGGCATTTGTAAATTAATCTTAAGAACAGACAGGAATCTCTACAGCATGCGTCTATGCTTTCTTAGCGGTGTCGATTATATACGTTCGGTAGCAACCTCTCAGTTCATAATCTACACTTTCCTTATCTCTAAGGTACATGCGATAATCGACTGATGAATTGGCTCACCTTATTTCTAAGATGCTAATTCTCACTACTTAGTGCTTTTTACACTTTCTATACCCTCTCAGGCAAGAACTCCAGCTTTAAACGTGTCTCTCAATGGCTTAAAGCAAGGATTACTGATGCATTAACTAGTAAAACCAGTAAACATGCATAGATTCACACTTAGATTAGATCTTCCAGCACATCAAAAGAATAAGATGCAAACAAGCAGGTAGATGGATGAAACATTTGGACTTATATTAATATTTGAATCAGAAATCTCTCAAAATCAATTCAGAATAAAAATATAAGTGAGAGAAAGAACTAGGATAAAGATGTCGGGCTGTTGAGTCAATCTCTTGATCTCGCTGGCTTAGGATTGGCTGCTTGATGATAATACTTCAAGGTTGAAGATGATTCAAGCTTTTTCAAGAAGAATTCGGAAATTTGTCTTCGAAATTCTGCAGAGAAAAGCTTGAGGTTTGATGGCGATTCTCGTCTCTCTCTCGGGGAAGCTGATCTTTCAAGTCAACTAACCCCTTCTTCAGTTTTTAAGCTGACTATTTATAGGCGTCATTGCAGCTTCTCTCCAATGATTTTCTGACGCATGCATTAAATTCCATGCCCTGCTGCGCCGCTTGCTTTGTTGCAAATACATTGGCTATGCCATGAATCTGTCTCATCAGCTACCAACTAGTTCTGTGGATTTGACAATCGCCGCCTGAGCATGTCAGACCTTTATAGTTCATCGCATGGTTCATGTTGGTCGCCTCTTCTATGGTTATGTGATCATGGATGCAGCAGTGCTTTCAGCTTTTATACTTTATCTTTGAATTCCTGCGATGAAATCAAGAATTTTTCATAATTTCCCTTCTTATGGCATATGTAAATATCTGATTGCAAAGCATACTTATTAGCTACGATTTATACCATATTTCACTTATTTCCTTGCGAATTCCTCTAATTATTTTAAAGAATCGAATAAGATAACTTGTATTTCTACAAGTTATCAGTCACCATTAATGTTGATTTATTAAATTAGTTAGCCCATCATTAAATATTAGTTTTATGACAGACAATGACCGTCATCATTGCTTTATTAAAAATGTAAAAAATAAATAAATTATAGGTAGCGCACATGGCTGACTAACAATATTTCTATGCAAATAATAAAAGTAATTTATATTTGTATACACAACAATGTAGCTTTCAAGAAACACCATAATTAATTAATTCACTCAAACAAAAGTAATATGACTATTCGTCTCTCCCAAACTACATTCAACTTACAAAGATAGACAAAGTTGTTAACTATAATAAATACAAAACTATATATACATGTTGACCCCCAATAATTTATCTTTATGAGCGTTAAATACTTGGTGAAGTTCCATCGTCAGTTTCACCATACTTGCTTTTTTCTTACGAAATCACTAGCTTCATCACACCCAACTTGAACTCAAGCGTCTTCCTACTTCCATCCTGAACGTTTTTTTGTGTATAGTTTCATCAAACTTGTGTGTCAAACCATATGCTAGAAGAGAATAATTAAAATAATTAAAAAAAAAACCTCTCTCTCTTCTTTAAAAATAAATATGTATGCACAAGACCCGCATCTAATACAAAAATAAGTAAGTTTACATTACCTCATTTTTCTAAGACCGATCTGCATCTAATACAAAAAACAATAGAAAACCTGCAAGTCTCCCAAAAAGCACTTCCATTGTCTCCAACATTAAGAAAAAAATATTTAGAATTTAGTCTCTAAATTCAAAGTGTATGCAACAAGACCATTCGGATCAAGAACACTACCCTAAACAATGAGTAAATTAACAAAGTCCAACATTAGTTATGGAAGGGAGAGATTCATGGGTATATAAGTAAGGATAATTATTTTCATACACGTAGAGATATGTGGAGTTTTGTTTTCCTTGTCATTATACTTTCAAGTTGTTTAATTTATATACACAAGAATGAGAATTAGATCATGAAATGTCTTATTATTCTCTTAACACTTGTAGGTTCACGCTTTCTTTCCCCACCTATATTATGTAATTTTCTTATTATAGTTATGGTTGATCATGAAATATATTGTCAAAAGGATAGTCTTACATACTAACAAAATGTTTTTGCAACAAATATGCTATTTTTTTTACAAACAAATTGAAGATTGTTTTGTTAGCACTAGTTATTTTTGTAATTTCCTATTTAAGGAATAAAACATTGTTGTCATTTGGTTTAACCTACCATGATAGCAAAATATTAACCATAACATTAGAACGTGTTCTTCCTCGGTAAGATTCTAACAAGATAAACATATGCAACAACTAGTAAAACCACCTTATATTAAAAATGGCTATTTTGGATATATAAATATTCTTACCTTTTGAAGTCTACCCTATCGCAAGTGCCTCACGTTTTAAGTTTTGTAATAGATTTTGTTATCAATGACGACCATGCCAAAGGGAATCACACTTGATTTTATTGGGATTCTCTTGGTTAACTTTAACATGATTGAGGTAACAAATGCAACAGATTACATTGGTTATGATCCAATAAAAGGAGATATTAGTCCTGGATGTAGTAAAAAGCATCCAGAACTTTGTAAATTAACTCCTGCAAATCCATATCAAAGAGGTTGCAATGTAATCCATCGTTGCAGGGCAGGAAATGATATTATAGATGGTGTAGAAGAGGATGCATCCACTAGCTCGGCAATGAGCCCTAATGCAGAACTGCATCTTCATTGA

mRNA sequence

ATGGCTTCGGGAATGGAACTATTAGGTGGACTTGGAAGGTGTTTAGATATGTTGGATCTTAAGATTTTGTTATCAATGACGACCATGCCAAAGGGAATCACACTTGATTTTATTGGGATTCTCTTGGTTAACTTTAACATGATTGAGGTAACAAATGCAACAGATTACATTGGTTATGATCCAATAAAAGGAGATATTAGTCCTGGATGTAGTAAAAAGCATCCAGAACTTTGTAAATTAACTCCTGCAAATCCATATCAAAGAGGTTGCAATGTAATCCATCGTTGCAGGGCAGGAAATGATATTATAGATGGTGTAGAAGAGGATGCATCCACTAGCTCGGCAATGAGCCCTAATGCAGAACTGCATCTTCATTGA

Coding sequence (CDS)

ATGGCTTCGGGAATGGAACTATTAGGTGGACTTGGAAGGTGTTTAGATATGTTGGATCTTAAGATTTTGTTATCAATGACGACCATGCCAAAGGGAATCACACTTGATTTTATTGGGATTCTCTTGGTTAACTTTAACATGATTGAGGTAACAAATGCAACAGATTACATTGGTTATGATCCAATAAAAGGAGATATTAGTCCTGGATGTAGTAAAAAGCATCCAGAACTTTGTAAATTAACTCCTGCAAATCCATATCAAAGAGGTTGCAATGTAATCCATCGTTGCAGGGCAGGAAATGATATTATAGATGGTGTAGAAGAGGATGCATCCACTAGCTCGGCAATGAGCCCTAATGCAGAACTGCATCTTCATTGA

Protein sequence

MASGMELLGGLGRCLDMLDLKILLSMTTMPKGITLDFIGILLVNFNMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCNVIHRCRAGNDIIDGVEEDASTSSAMSPNAELHLH
Homology
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BLAST of Lsi06G005950 vs. ExPASy Swiss-Prot
Match: Q3ECL0 (Protein RALF-like 9 OS=Arabidopsis thaliana OX=3702 GN=RALFL9 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.0e-08
Identity = 34/74 (45.95%), Postives = 41/74 (55.41%), Query Frame = 0 

Query: 29  MPKGITLDFIGILLVNFNMIEVT--NATDYIGYDPI-KGDISPGCSKKHPELCKLTPANP 88
           M K I +  + + LV F  +  T   AT YI Y  I +GD +  C K HP  CK   ANP
Sbjct: 3   MSKSIKV-ILSLALVVFLALAATKVEATRYITYPAIDRGDHAVHCDKAHPNTCKKKEANP 62

Query: 89  YQRGCNVIHRCRAG 100
           YQRGC  I+RCR G
Sbjct: 63  YQRGCEKINRCRGG 75

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BLAST of Lsi06G005950 vs. ExPASy Swiss-Prot
Match: A8MQM2 (Protein RALF-like 6 OS=Arabidopsis thaliana OX=3702 GN=RALFL6 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.7e-07
Identity = 24/65 (36.92%), Postives = 36/65 (55.38%), Query Frame = 0 

Query: 33 ITLDFIGILLVNFNMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCNV 92
          I + F+ ++++            YI Y+ +KGDI PGCS K+P+ C   PA  Y RGC +
Sbjct: 9  IRIFFVSVMIILSLFSGFGEGQTYINYNGMKGDIIPGCSSKNPKECVKIPAYSYNRGCEI 68

Query: 93 IHRCR 98
            RC+
Sbjct: 69 STRCQ 73

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BLAST of Lsi06G005950 vs. ExPASy Swiss-Prot
Match: A8MQM7 (Protein RALF-like 15 OS=Arabidopsis thaliana OX=3702 GN=RALFL15 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.7e-06
Identity = 30/72 (41.67%), Postives = 38/72 (52.78%), Query Frame = 0 

Query: 29 MPKGITLDFIGILLVNFNMIEVT--NATDYIGYDPIK-GDISPGCSKKHPELCKLTPANP 88
          M K I +  + + L+ F  +  T   AT YI Y  +  GD +  C K HP  CK   ANP
Sbjct: 3  MSKSIKV-IVSLALILFLALAATKVEATRYISYRGMNHGDHAIHCDKAHPNTCKKQVANP 62

Query: 89 YQRGCNVIHRCR 98
          Y+RGC  I RCR
Sbjct: 63 YRRGCGTIERCR 73

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BLAST of Lsi06G005950 vs. ExPASy Swiss-Prot
Match: A8MQP2 (Protein RALF-like 29 OS=Arabidopsis thaliana OX=3702 GN=RALFL29 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.2e-05
Identity = 29/71 (40.85%), Postives = 38/71 (53.52%), Query Frame = 0 

Query: 29 MPKGITLDFIGILLVNFNMIEVTNATDYIGYDPIKGDISPGCSKKHPELC--KLTPANPY 88
          M K   + F+ IL+V    I   +A  YI Y PI+ D+  GC  + P     K TPANPY
Sbjct: 1  MIKTKEVTFVTILIVLCVFISTIHAKRYIEY-PIRLDLGKGCDPRFPTAACYKRTPANPY 60

Query: 89 QRGCNVIHRCR 98
          +R C   +RCR
Sbjct: 61 RRPCTTANRCR 70

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BLAST of Lsi06G005950 vs. ExPASy Swiss-Prot
Match: A8MR00 (Protein RALF-like 36 OS=Arabidopsis thaliana OX=3702 GN=At2g32885 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.3e-05
Identity = 20/59 (33.90%), Postives = 32/59 (54.24%), Query Frame = 0 

Query: 41  LLVNFNMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCNVIHRCRAG 100
           L++  +++  T   + IG   ++ D+  GC+      CK+ PANPY+ GC    RCR G
Sbjct: 14  LIIIISIVMSTTEANSIGAPAMREDLPKGCAPGSSAGCKMQPANPYKPGCEASQRCRGG 72

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BLAST of Lsi06G005950 vs. ExPASy TrEMBL
Match: A0A0A0L8B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.1e-23
Identity = 61/98 (62.24%), Postives = 71/98 (72.45%), Query Frame = 0 

Query: 29  MPKGITLDFIGILLVNFNMIEVTNATDYIGYDPI-KGDISPGCSKKHPELCKLTPANPYQ 88
           M K +TL FIGILLV+F+MI +TNA  +I Y  I  GD+SPGCS  HPELC++  ANPYQ
Sbjct: 3   MSKRMTLVFIGILLVSFDMIMITNARKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQ 62

Query: 89  RGCNVIHRCRAGNDIIDGVEE----DASTSSAMSPNAE 122
           RGCN I RCR GNDIID  EE    DAS S ++SPN E
Sbjct: 63  RGCNRIDRCREGNDIIDAEEEHIEGDASISPSISPNIE 100

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BLAST of Lsi06G005950 vs. ExPASy TrEMBL
Match: A0A6J1DYH7 (uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025777 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.2e-20
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 31  KGITLDFIGILLVNFNMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGC 90
           KG    F+GILL    MI++TNAT +I YDP++GD+SPGCS  HPELCKL  ANPY+RGC
Sbjct: 5   KGSMFIFVGILLYCMGMIDITNATRFIHYDPLRGDVSPGCSPTHPELCKLHSANPYKRGC 64

Query: 91  NVIHRCRAGNDIIDGVE 108
             I RCR G+DIID  E
Sbjct: 65  TSIDRCRGGSDIIDDAE 81

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BLAST of Lsi06G005950 vs. ExPASy TrEMBL
Match: A0A6J1C8U5 (uncharacterized protein LOC111008495 OS=Momordica charantia OX=3673 GN=LOC111008495 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.1e-19
Identity = 50/79 (63.29%), Postives = 58/79 (73.42%), Query Frame = 0 

Query: 30  PKGITLDFIGILLVNFNMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRG 89
           PKG  L FIGILLV+F MIE+TNA  YI Y  +K D+SPGCS KHP LCKL  AN YQRG
Sbjct: 4   PKGSMLVFIGILLVSFRMIEITNAIQYINYHALKTDVSPGCSPKHPGLCKLHEANSYQRG 63

Query: 90  CNVIHRCRAGNDIIDGVEE 109
           C+ I+RCR  +D ID  E+
Sbjct: 64  CSAINRCRR-DDYIDSEEK 81

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BLAST of Lsi06G005950 vs. ExPASy TrEMBL
Match: A0A6J1HAJ8 (protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.1e-19
Identity = 56/114 (49.12%), Postives = 67/114 (58.77%), Query Frame = 0 

Query: 29  MPKGITLDFIGILLVNFNMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQR 88
           M KG  + FI +L V+ NMIE+TNAT YI YDP+K +    CS  HP+LCK TPANPYQR
Sbjct: 1   MSKGTMIIFIVVLFVSINMIEITNATHYINYDPLKKNRDLVCSPTHPDLCKTTPANPYQR 60

Query: 89  GCNVIHRCRA--GNDIIDGVEEDASTSS------------------AMSPNAEL 123
           GCN I RCR    +DIID  EED + +                   A+SPN EL
Sbjct: 61  GCNPIDRCRGAESDDIIDNDEEDITNNDEEDDIVDNDEGYDNASCPAISPNGEL 114

[Close]
BLAST of Lsi06G005950 vs. ExPASy TrEMBL
Match: A0A2K3KXF8 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g057917 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 42/95 (44.21%), Postives = 53/95 (55.79%), Query Frame = 0 

Query: 29  MPKGITLDFIGILLVNFNMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQR 88
           M K + + F+  LL+     +   A  +IGY  I  DISPGCS KHPELCK  PANPY+R
Sbjct: 1   MAKTMLVVFLSALLICTFFTQDVEAKKFIGYGAIGRDISPGCSPKHPELCKFHPANPYRR 60

Query: 89  GCNVIHRCRAG----NDIIDGVEEDASTSSAMSPN 120
           GC    RCR G     +  + VEED   S  + P+
Sbjct: 61  GCEAEMRCRGGPSAEKEEEEEVEEDPDHSHILIPD 95

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BLAST of Lsi06G005950 vs. NCBI nr
Match: KAE8650705.1 (hypothetical protein Csa_010421 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 8.4e-23
Identity = 61/98 (62.24%), Postives = 71/98 (72.45%), Query Frame = 0 

Query: 29  MPKGITLDFIGILLVNFNMIEVTNATDYIGYDPI-KGDISPGCSKKHPELCKLTPANPYQ 88
           M K +TL FIGILLV+F+MI +TNA  +I Y  I  GD+SPGCS  HPELC++  ANPYQ
Sbjct: 3   MSKRMTLVFIGILLVSFDMIMITNAKKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQ 62

Query: 89  RGCNVIHRCRAGNDIIDGVEE----DASTSSAMSPNAE 122
           RGCN I RCR GNDIID  EE    DAS S ++SPN E
Sbjct: 63  RGCNRIDRCREGNDIIDAEEEHIEGDASISPSISPNIE 100

[Close]
BLAST of Lsi06G005950 vs. NCBI nr
Match: XP_022159360.1 (uncharacterized protein LOC111025777 [Momordica charantia])

HSP 1 Score: 107.8 bits (268), Expect = 6.7e-20
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 31  KGITLDFIGILLVNFNMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGC 90
           KG    F+GILL    MI++TNAT +I YDP++GD+SPGCS  HPELCKL  ANPY+RGC
Sbjct: 5   KGSMFIFVGILLYCMGMIDITNATRFIHYDPLRGDVSPGCSPTHPELCKLHSANPYKRGC 64

Query: 91  NVIHRCRAGNDIIDGVE 108
             I RCR G+DIID  E
Sbjct: 65  TSIDRCRGGSDIIDDAE 81

[Close]
BLAST of Lsi06G005950 vs. NCBI nr
Match: XP_022136918.1 (uncharacterized protein LOC111008495 [Momordica charantia])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-18
Identity = 50/79 (63.29%), Postives = 58/79 (73.42%), Query Frame = 0 

Query: 30  PKGITLDFIGILLVNFNMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRG 89
           PKG  L FIGILLV+F MIE+TNA  YI Y  +K D+SPGCS KHP LCKL  AN YQRG
Sbjct: 4   PKGSMLVFIGILLVSFRMIEITNAIQYINYHALKTDVSPGCSPKHPGLCKLHEANSYQRG 63

Query: 90  CNVIHRCRAGNDIIDGVEE 109
           C+ I+RCR  +D ID  E+
Sbjct: 64  CSAINRCRR-DDYIDSEEK 81

[Close]
BLAST of Lsi06G005950 vs. NCBI nr
Match: XP_022961577.1 (protein RALF-like 9 [Cucurbita moschata])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-18
Identity = 56/114 (49.12%), Postives = 67/114 (58.77%), Query Frame = 0 

Query: 29  MPKGITLDFIGILLVNFNMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQR 88
           M KG  + FI +L V+ NMIE+TNAT YI YDP+K +    CS  HP+LCK TPANPYQR
Sbjct: 1   MSKGTMIIFIVVLFVSINMIEITNATHYINYDPLKKNRDLVCSPTHPDLCKTTPANPYQR 60

Query: 89  GCNVIHRCRA--GNDIIDGVEEDASTSS------------------AMSPNAEL 123
           GCN I RCR    +DIID  EED + +                   A+SPN EL
Sbjct: 61  GCNPIDRCRGAESDDIIDNDEEDITNNDEEDDIVDNDEGYDNASCPAISPNGEL 114

[Close]
BLAST of Lsi06G005950 vs. NCBI nr
Match: XP_023546462.1 (protein RALF-like 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-16
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 0 

Query: 37  FIGILLVNFNMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCNVIHRC 96
           FI +L V+ NMIE+TNAT YI YDP+K +    CS  HP+LCK  PANPYQRGCN I RC
Sbjct: 4   FIVVLFVSINMIEITNATHYINYDPLKKNRDLVCSPTHPDLCKKIPANPYQRGCNPIDRC 63

Query: 97  RA--GNDIIDGVEEDASTSS 115
           R    +DIID  EED  T++
Sbjct: 64  RGAESDDIIDNDEEDDITNN 83

[Close]
BLAST of Lsi06G005950 vs. TAIR 10
Match: AT1G61566.1 (ralf-like 9 )

HSP 1 Score: 58.2 bits (139), Expect = 5.7e-09
Identity = 34/74 (45.95%), Postives = 41/74 (55.41%), Query Frame = 0 

Query: 29  MPKGITLDFIGILLVNFNMIEVT--NATDYIGYDPI-KGDISPGCSKKHPELCKLTPANP 88
           M K I +  + + LV F  +  T   AT YI Y  I +GD +  C K HP  CK   ANP
Sbjct: 3   MSKSIKV-ILSLALVVFLALAATKVEATRYITYPAIDRGDHAVHCDKAHPNTCKKKEANP 62

Query: 89  YQRGCNVIHRCRAG 100
           YQRGC  I+RCR G
Sbjct: 63  YQRGCEKINRCRGG 75

[Close]
BLAST of Lsi06G005950 vs. TAIR 10
Match: AT1G60625.1 (RALF-like 6 )

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-08
Identity = 24/65 (36.92%), Postives = 36/65 (55.38%), Query Frame = 0 

Query: 33 ITLDFIGILLVNFNMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCNV 92
          I + F+ ++++            YI Y+ +KGDI PGCS K+P+ C   PA  Y RGC +
Sbjct: 9  IRIFFVSVMIILSLFSGFGEGQTYINYNGMKGDIIPGCSSKNPKECVKIPAYSYNRGCEI 68

Query: 93 IHRCR 98
            RC+
Sbjct: 69 STRCQ 73

[Close]
BLAST of Lsi06G005950 vs. TAIR 10
Match: AT2G22055.1 (RALF-like 15 )

HSP 1 Score: 52.0 bits (123), Expect = 4.1e-07
Identity = 30/72 (41.67%), Postives = 38/72 (52.78%), Query Frame = 0 

Query: 29 MPKGITLDFIGILLVNFNMIEVT--NATDYIGYDPIK-GDISPGCSKKHPELCKLTPANP 88
          M K I +  + + L+ F  +  T   AT YI Y  +  GD +  C K HP  CK   ANP
Sbjct: 3  MSKSIKV-IVSLALILFLALAATKVEATRYISYRGMNHGDHAIHCDKAHPNTCKKQVANP 62

Query: 89 YQRGCNVIHRCR 98
          Y+RGC  I RCR
Sbjct: 63 YRRGCGTIERCR 73

[Close]
BLAST of Lsi06G005950 vs. TAIR 10
Match: AT4G11653.1 (RALF-like 29 )

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06
Identity = 29/71 (40.85%), Postives = 38/71 (53.52%), Query Frame = 0 

Query: 29 MPKGITLDFIGILLVNFNMIEVTNATDYIGYDPIKGDISPGCSKKHPELC--KLTPANPY 88
          M K   + F+ IL+V    I   +A  YI Y PI+ D+  GC  + P     K TPANPY
Sbjct: 1  MIKTKEVTFVTILIVLCVFISTIHAKRYIEY-PIRLDLGKGCDPRFPTAACYKRTPANPY 60

Query: 89 QRGCNVIHRCR 98
          +R C   +RCR
Sbjct: 61 RRPCTTANRCR 70

[Close]
BLAST of Lsi06G005950 vs. TAIR 10
Match: AT2G32885.1 (Rapid alkalinization factor (RALF) family protein )

HSP 1 Score: 48.5 bits (114), Expect = 4.5e-06
Identity = 20/59 (33.90%), Postives = 32/59 (54.24%), Query Frame = 0 

Query: 41  LLVNFNMIEVTNATDYIGYDPIKGDISPGCSKKHPELCKLTPANPYQRGCNVIHRCRAG 100
           L++  +++  T   + IG   ++ D+  GC+      CK+ PANPY+ GC    RCR G
Sbjct: 14  LIIIISIVMSTTEANSIGAPAMREDLPKGCAPGSSAGCKMQPANPYKPGCEASQRCRGG 72

The following BLAST results are available for this feature:
BLAST of Lsi06G005950 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3ECL08.0e-0845.95Protein RALF-like 9 OS=Arabidopsis thaliana OX=3702 GN=RALFL9 PE=3 SV=1[more]
A8MQM26.7e-0736.92Protein RALF-like 6 OS=Arabidopsis thaliana OX=3702 GN=RALFL6 PE=3 SV=1[more]
A8MQM75.7e-0641.67Protein RALF-like 15 OS=Arabidopsis thaliana OX=3702 GN=RALFL15 PE=3 SV=1[more]
A8MQP22.2e-0540.85Protein RALF-like 29 OS=Arabidopsis thaliana OX=3702 GN=RALFL29 PE=3 SV=1[more]
A8MR006.3e-0533.90Protein RALF-like 36 OS=Arabidopsis thaliana OX=3702 GN=At2g32885 PE=3 SV=1[more]
BLAST of Lsi06G005950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8B14.1e-2362.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1[more]
A0A6J1DYH73.2e-2062.34uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1C8U56.1e-1963.29uncharacterized protein LOC111008495 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A6J1HAJ86.1e-1949.12protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1[more]
A0A2K3KXF81.6e-1144.21Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g057917 PE=3 SV=1[more]
BLAST of Lsi06G005950 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650705.18.4e-2362.24hypothetical protein Csa_010421 [Cucumis sativus][more]
XP_022159360.16.7e-2062.34uncharacterized protein LOC111025777 [Momordica charantia][more]
XP_022136918.11.3e-1863.29uncharacterized protein LOC111008495 [Momordica charantia][more]
XP_022961577.11.3e-1849.12protein RALF-like 9 [Cucurbita moschata][more]
XP_023546462.12.0e-1658.75protein RALF-like 9 [Cucurbita pepo subsp. pepo][more]
BLAST of Lsi06G005950 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G61566.15.7e-0945.95ralf-like 9 [more]
AT1G60625.14.8e-0836.92RALF-like 6 [more]
AT2G22055.14.1e-0741.67RALF-like 15 [more]
AT4G11653.11.5e-0640.85RALF-like 29 [more]
AT2G32885.14.5e-0633.90Rapid alkalinization factor (RALF) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 52..97
e-value: 3.3E-9
score: 37.6
NoneNo IPR availablePANTHERPTHR34270:SF10SUBFAMILY NOT NAMEDcoord: 29..114
NoneNo IPR availablePANTHERPTHR34270PROTEIN RALF-LIKE 15-RELATEDcoord: 29..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G005950.1Lsi06G005950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region