Lsi06G004770 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G004770
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Selenoprotein O
Location	chr06: 5490876 .. 5491573 (+)
RNA-Seq Expression	Lsi06G004770
Synteny	Lsi06G004770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGGATGCCTTCAAAATTCAAAGTTAGAAAAACTTAAAAATAAAAAAGAAAAGAAATGAAAAAGAAGAGAAAAAAAGAAGTTAAAAAAAAAAAACAGAATGTCATTGGTTTCACATCTCTTCCCCAAGCTCTCGCTGCTTCCCCACATTTCTCCCCTCTGCCATGGCCACCGCCTCGGCTTAGTTCGCCGCCATTCAACTCTCCTCATTCGCCGCCGCCCTCCTGCCTCTCTCGTCTCTCCACCTTCACCACTCGCCGGCCACTCTCTCCACGGCCGCCGGAGAGTTTCCATGGACTCTGCTTCACCGGAGGTTTCGGCGTCGGTCGACTCCGTGGCGGAGGGTTTGAAGAATCAGAGCTTGAACAGTGACGATCGTGGCGATGGAGGTAGTAGCGTCAAGCACGAGGCCAAAAAGAAGCTCGAAGATCTGAACTGGGACAATTCATTTGTCAGAGAGCTGCCTGGCGATCCCCGTACCGATATCATTCCACGAGAGGTACTATTCCTTTGTTTTGAGCTCTGATTTTTTACTAATGTGAACAGTTGTTTGGAATTTGGAATTATGAATGTTACTTGTATTTCCAGGAAATGTAGGCTGTGGGGAATAATGTTTGTAATCAATTGAAAGCTCGAGTAGGAGCTCTTTTATACGCTATAGTTTATTGGTTTTACCTTACTGCGAGTTTCGGTTACTTC

mRNA sequence

TAAGGATGCCTTCAAAATTCAAAGTTAGAAAAACTTAAAAATAAAAAAGAAAAGAAATGAAAAAGAAGAGAAAAAAAGAAGTTAAAAAAAAAAAACAGAATGTCATTGGTTTCACATCTCTTCCCCAAGCTCTCGCTGCTTCCCCACATTTCTCCCCTCTGCCATGGCCACCGCCTCGGCTTAGTTCGCCGCCATTCAACTCTCCTCATTCGCCGCCGCCCTCCTGCCTCTCTCGTCTCTCCACCTTCACCACTCGCCGGCCACTCTCTCCACGGCCGCCGGAGAGTTTCCATGGACTCTGCTTCACCGGAGGTTTCGGCGTCGGTCGACTCCGTGGCGGAGGGTTTGAAGAATCAGAGCTTGAACAGTGACGATCGTGGCGATGGAGGTAGTAGCGTCAAGCACGAGGCCAAAAAGAAGCTCGAAGATCTGAACTGGGACAATTCATTTGTCAGAGAGCTGCCTGGCGATCCCCGTACCGATATCATTCCACGAGAGGCTGTGGGGAATAATGTTTGTAATCAATTGAAAGCTCGAGTAGGAGCTCTTTTATACGCTATAGTTTATTGGTTTTACCTTACTGCGAGTTTCGGTTACTTC

Coding sequence (CDS)

ATGTCATTGGTTTCACATCTCTTCCCCAAGCTCTCGCTGCTTCCCCACATTTCTCCCCTCTGCCATGGCCACCGCCTCGGCTTAGTTCGCCGCCATTCAACTCTCCTCATTCGCCGCCGCCCTCCTGCCTCTCTCGTCTCTCCACCTTCACCACTCGCCGGCCACTCTCTCCACGGCCGCCGGAGAGTTTCCATGGACTCTGCTTCACCGGAGGTTTCGGCGTCGGTCGACTCCGTGGCGGAGGGTTTGAAGAATCAGAGCTTGAACAGTGACGATCGTGGCGATGGAGGTAGTAGCGTCAAGCACGAGGCCAAAAAGAAGCTCGAAGATCTGAACTGGGACAATTCATTTGTCAGAGAGCTGCCTGGCGATCCCCGTACCGATATCATTCCACGAGAGGCTGTGGGGAATAATGTTTGTAATCAATTGAAAGCTCGAGTAGGAGCTCTTTTATACGCTATAGTTTATTGGTTTTACCTTACTGCGAGTTTCGGTTACTTC

Protein sequence

MSLVSHLFPKLSLLPHISPLCHGHRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSVKHEAKKKLEDLNWDNSFVRELPGDPRTDIIPREAVGNNVCNQLKARVGALLYAIVYWFYLTASFGYF

Homology

[Close]

BLAST of Lsi06G004770 vs. ExPASy TrEMBL
Match: A0A6J1H9V3 (Selenoprotein O OS=Cucurbita moschata OX=3662 GN=LOC111461421 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.1e-55
Identity = 115/137 (83.94%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 1   MSLVSHLFPKLSLLPHISPLCHG--HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLH 60
           MSLVSHLFPKLSLLPHIS LCHG  HRLGLVRRHST LI RRPPAS+ S PSPL GHS H
Sbjct: 1   MSLVSHLFPKLSLLPHISLLCHGHRHRLGLVRRHSTTLIHRRPPASIFSSPSPLVGHSRH 60

Query: 61  GRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSVKHEAKKKLEDLNWDNSFV 120
           GRRRVSMDSASPEVSASVDSVA+GLKNQSLNSDDRG  GS V+H AKKKLE+LNWDNSFV
Sbjct: 61  GRRRVSMDSASPEVSASVDSVADGLKNQSLNSDDRGGLGSGVEHGAKKKLEELNWDNSFV 120

Query: 121 RELPGDPRTDIIPREAV 136
           RELPGDPRTD++PR+ +
Sbjct: 121 RELPGDPRTDVLPRQVL 137

[Close]

BLAST of Lsi06G004770 vs. ExPASy TrEMBL
Match: A0A6J1JKI6 (Selenoprotein O OS=Cucurbita maxima OX=3661 GN=LOC111485404 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.4e-55
Identity = 114/137 (83.21%), Postives = 124/137 (90.51%), Query Frame = 0


Query: 1   MSLVSHLFPKLSLLPHISPLCHG--HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLH 60
           MSLVSHLFPKLSLLPHIS LC+G  HRLGLVRRHST LI RRPPA++ SPPSPL GHS H
Sbjct: 1   MSLVSHLFPKLSLLPHISLLCNGHRHRLGLVRRHSTTLIHRRPPATIFSPPSPLVGHSRH 60

Query: 61  GRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSVKHEAKKKLEDLNWDNSFV 120
           GRRRVSMDSASPEVSASVDSVAEGLKNQ+LNSDDRG  GS V+H A+KKLE+LNWDNSFV
Sbjct: 61  GRRRVSMDSASPEVSASVDSVAEGLKNQNLNSDDRGGLGSGVEHGARKKLEELNWDNSFV 120

Query: 121 RELPGDPRTDIIPREAV 136
           RELPGDPRTD+IPR+ +
Sbjct: 121 RELPGDPRTDVIPRQVL 137

[Close]

BLAST of Lsi06G004770 vs. ExPASy TrEMBL
Match: A0A0A0LXE5 (Selenoprotein O OS=Cucumis sativus OX=3659 GN=Csa_1G605720 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.3e-53
Identity = 111/135 (82.22%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 1   MSLVSHLFPKLSLLPHISPLCHGHRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGR 60
           MSLVSHLFPK S+  +IS LCHGHRLGLVRR STLLIRR PPAS  S PSPL  HS HGR
Sbjct: 1   MSLVSHLFPKPSVFSNISLLCHGHRLGLVRRRSTLLIRRHPPASFTSLPSPLPAHSRHGR 60

Query: 61  RRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSVKHEAKKKLEDLNWDNSFVRE 120
           R++SMDSASPEVSASVDSVAEGLKNQSLN+DDR DGGSS+ H  KKKLEDLNWDNSFVRE
Sbjct: 61  RKLSMDSASPEVSASVDSVAEGLKNQSLNNDDRVDGGSSINHATKKKLEDLNWDNSFVRE 120

Query: 121 LPGDPRTDIIPREAV 136
           LPGDPRTDIIPRE +
Sbjct: 121 LPGDPRTDIIPREVL 135

[Close]

BLAST of Lsi06G004770 vs. ExPASy TrEMBL
Match: A0A5D3DUC9 (Selenoprotein O OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold699G00140 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.6e-51
Identity = 108/135 (80.00%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MSLVSHLFPKLSLLPHISPLCHGHRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGR 60
           MSLVSHLFPK S+  +IS LCHGHRLGLV R STLLIRR  P+S  S PSPL  HS HGR
Sbjct: 1   MSLVSHLFPKPSVFSNISLLCHGHRLGLVPRRSTLLIRRHSPSSFTSLPSPLPAHSRHGR 60

Query: 61  RRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSVKHEAKKKLEDLNWDNSFVRE 120
           R++SMDSASPEVSASVDSVAEGLKNQSLN+DDR DGGSS+ H  KKKLEDLNWDNSFVRE
Sbjct: 61  RKLSMDSASPEVSASVDSVAEGLKNQSLNNDDRVDGGSSINHATKKKLEDLNWDNSFVRE 120

Query: 121 LPGDPRTDIIPREAV 136
           LPGDPRTDIIPRE +
Sbjct: 121 LPGDPRTDIIPREVL 135

[Close]

BLAST of Lsi06G004770 vs. ExPASy TrEMBL
Match: A0A1S3BRJ3 (Selenoprotein O OS=Cucumis melo OX=3656 GN=LOC103492506 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.5e-49
Identity = 106/135 (78.52%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 1   MSLVSHLFPKLSLLPHISPLCHGHRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGR 60
           MSLVSHLFPK S+  +IS LCHGHRLGLV R STLLIRR  P+S  S PS L  HS H R
Sbjct: 1   MSLVSHLFPKPSVFSNISLLCHGHRLGLVPRRSTLLIRRHSPSSFTSLPSSLPAHSRHVR 60

Query: 61  RRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSVKHEAKKKLEDLNWDNSFVRE 120
           R++SMDSASPEVSASVDSVAEGLKNQSLN+DDR DGGSS+ H  KKKLEDLNWDNSFVRE
Sbjct: 61  RKLSMDSASPEVSASVDSVAEGLKNQSLNNDDRVDGGSSINHATKKKLEDLNWDNSFVRE 120

Query: 121 LPGDPRTDIIPREAV 136
           LPGDPRTDIIPRE +
Sbjct: 121 LPGDPRTDIIPREVL 135

[Close]

BLAST of Lsi06G004770 vs. NCBI nr
Match: XP_038878878.1 (protein adenylyltransferase SelO [Benincasa hispida])

HSP 1 Score: 246.1 bits (627), Expect = 2.1e-61
Identity = 124/135 (91.85%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 1   MSLVSHLFPKLSLLPHISPLCHGHRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLHGR 60
           MSLVSHLFPKLS+LPHIS LCHGHRLGLVRR STLLIRRRPPAS +SPPSPLAGHS HGR
Sbjct: 1   MSLVSHLFPKLSVLPHISLLCHGHRLGLVRRRSTLLIRRRPPASFLSPPSPLAGHSRHGR 60

Query: 61  RRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSVKHEAKKKLEDLNWDNSFVRE 120
           RRVSMDSASPEVSASVDSVAEGLKNQSLNSD+ GDGGSSVKHEAKKKLEDLNWDNSFVRE
Sbjct: 61  RRVSMDSASPEVSASVDSVAEGLKNQSLNSDNPGDGGSSVKHEAKKKLEDLNWDNSFVRE 120

Query: 121 LPGDPRTDIIPREAV 136
           LPGDPR DIIPRE +
Sbjct: 121 LPGDPRNDIIPREVL 135

[Close]

BLAST of Lsi06G004770 vs. NCBI nr
Match: KAG6590231.1 (hypothetical protein SDJN03_15654, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229.2 bits (583), Expect = 2.7e-56
Identity = 116/137 (84.67%), Postives = 124/137 (90.51%), Query Frame = 0


Query: 1   MSLVSHLFPKLSLLPHISPLCHG--HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLH 60
           MSLVSHLFPKLSLLPHIS LCHG  HRLGLVRRHST LI RRPPAS+ SPPSPL GHS H
Sbjct: 1   MSLVSHLFPKLSLLPHISLLCHGHRHRLGLVRRHSTTLIHRRPPASIFSPPSPLVGHSRH 60

Query: 61  GRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSVKHEAKKKLEDLNWDNSFV 120
           GRRRVSMDSASPEVSASVDSVA+GLKNQSLNSDDRG  GS V+H AKKKLE+LNWDNSFV
Sbjct: 61  GRRRVSMDSASPEVSASVDSVADGLKNQSLNSDDRGGLGSGVEHGAKKKLEELNWDNSFV 120

Query: 121 RELPGDPRTDIIPREAV 136
           RELPGDPRTD++PR+ +
Sbjct: 121 RELPGDPRTDVLPRQVL 137

[Close]

BLAST of Lsi06G004770 vs. NCBI nr
Match: XP_022960705.1 (uncharacterized protein LOC111461421 [Cucurbita moschata])

HSP 1 Score: 226.1 bits (575), Expect = 2.2e-55
Identity = 115/137 (83.94%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 1   MSLVSHLFPKLSLLPHISPLCHG--HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLH 60
           MSLVSHLFPKLSLLPHIS LCHG  HRLGLVRRHST LI RRPPAS+ S PSPL GHS H
Sbjct: 1   MSLVSHLFPKLSLLPHISLLCHGHRHRLGLVRRHSTTLIHRRPPASIFSSPSPLVGHSRH 60

Query: 61  GRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSVKHEAKKKLEDLNWDNSFV 120
           GRRRVSMDSASPEVSASVDSVA+GLKNQSLNSDDRG  GS V+H AKKKLE+LNWDNSFV
Sbjct: 61  GRRRVSMDSASPEVSASVDSVADGLKNQSLNSDDRGGLGSGVEHGAKKKLEELNWDNSFV 120

Query: 121 RELPGDPRTDIIPREAV 136
           RELPGDPRTD++PR+ +
Sbjct: 121 RELPGDPRTDVLPRQVL 137

[Close]

BLAST of Lsi06G004770 vs. NCBI nr
Match: XP_023516247.1 (uncharacterized protein LOC111780158 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225.3 bits (573), Expect = 3.8e-55
Identity = 115/139 (82.73%), Postives = 123/139 (88.49%), Query Frame = 0


Query: 1   MSLVSHLFPKLSLLPHISPLCHG----HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHS 60
           MSLVSHLFPKLSLLPHIS LCHG    HRLGLVRRHST LI RR PAS+ SPPSPL GHS
Sbjct: 1   MSLVSHLFPKLSLLPHISLLCHGHRHRHRLGLVRRHSTTLIHRRSPASIFSPPSPLVGHS 60

Query: 61  LHGRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSVKHEAKKKLEDLNWDNS 120
            HGRRRVSMDSASPEVSASVDSVA+GLKNQSLNSDDRG  GS V+H AKKKLE+LNWDNS
Sbjct: 61  RHGRRRVSMDSASPEVSASVDSVADGLKNQSLNSDDRGGLGSGVEHGAKKKLEELNWDNS 120

Query: 121 FVRELPGDPRTDIIPREAV 136
           FVRELPGDPRTD++PR+ +
Sbjct: 121 FVRELPGDPRTDVLPRQVL 139

[Close]

BLAST of Lsi06G004770 vs. NCBI nr
Match: XP_022988044.1 (uncharacterized protein LOC111485404 [Cucurbita maxima])

HSP 1 Score: 224.9 bits (572), Expect = 5.0e-55
Identity = 114/137 (83.21%), Postives = 124/137 (90.51%), Query Frame = 0


Query: 1   MSLVSHLFPKLSLLPHISPLCHG--HRLGLVRRHSTLLIRRRPPASLVSPPSPLAGHSLH 60
           MSLVSHLFPKLSLLPHIS LC+G  HRLGLVRRHST LI RRPPA++ SPPSPL GHS H
Sbjct: 1   MSLVSHLFPKLSLLPHISLLCNGHRHRLGLVRRHSTTLIHRRPPATIFSPPSPLVGHSRH 60

Query: 61  GRRRVSMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSVKHEAKKKLEDLNWDNSFV 120
           GRRRVSMDSASPEVSASVDSVAEGLKNQ+LNSDDRG  GS V+H A+KKLE+LNWDNSFV
Sbjct: 61  GRRRVSMDSASPEVSASVDSVAEGLKNQNLNSDDRGGLGSGVEHGARKKLEELNWDNSFV 120

Query: 121 RELPGDPRTDIIPREAV 136
           RELPGDPRTD+IPR+ +
Sbjct: 121 RELPGDPRTDVIPRQVL 137

[Close]

BLAST of Lsi06G004770 vs. TAIR 10
Match: AT5G13030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0061 (InterPro:IPR003846); Has 5046 Blast hits to 4997 proteins in 1211 species: Archae - 8; Bacteria - 2327; Metazoa - 120; Fungi - 134; Plants - 48; Viruses - 0; Other Eukaryotes - 2409 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-13
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 64  SMDSASPEVSASVDSVAEGLKNQSLNSDDRGDGGSSVKHEAKKKLEDLNWDNSFVRELPG 123
           S  S +P   +S DS+A+ L+NQSL + D G        + KKKLED NWD+SFV+ELPG
Sbjct: 55  SSSSPTPVTDSSADSLAKDLQNQSLGAVDEG-------VKIKKKLEDFNWDHSFVKELPG 114

Query: 124 DPRTDIIPREAV 136
           DPRTD+I RE +
Sbjct: 115 DPRTDVISREVL 119

The following BLAST results are available for this feature:

BLAST of Lsi06G004770 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G004770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H9V3	1.1e-55	83.94	Selenoprotein O OS=Cucurbita moschata OX=3662 GN=LOC111461421 PE=3 SV=1	[more]
A0A6J1JKI6	2.4e-55	83.21	Selenoprotein O OS=Cucurbita maxima OX=3661 GN=LOC111485404 PE=3 SV=1	[more]
A0A0A0LXE5	1.3e-53	82.22	Selenoprotein O OS=Cucumis sativus OX=3659 GN=Csa_1G605720 PE=3 SV=1	[more]
A0A5D3DUC9	1.6e-51	80.00	Selenoprotein O OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold699G0014...	[more]
A0A1S3BRJ3	1.5e-49	78.52	Selenoprotein O OS=Cucumis melo OX=3656 GN=LOC103492506 PE=3 SV=1	[more]

BLAST of Lsi06G004770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878878.1	2.1e-61	91.85	protein adenylyltransferase SelO [Benincasa hispida]	[more]
KAG6590231.1	2.7e-56	84.67	hypothetical protein SDJN03_15654, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022960705.1	2.2e-55	83.94	uncharacterized protein LOC111461421 [Cucurbita moschata]	[more]
XP_023516247.1	3.8e-55	82.73	uncharacterized protein LOC111780158 [Cucurbita pepo subsp. pepo]	[more]
XP_022988044.1	5.0e-55	83.21	uncharacterized protein LOC111485404 [Cucurbita maxima]	[more]

BLAST of Lsi06G004770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13030.1	3.0e-13	52.78	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..102
None	No IPR available	PANTHER	PTHR32057:SF15	UPF0061 PROTEIN AZO1574-LIKE	coord: 54..135
IPR003846	Protein adenylyltransferase SelO	PANTHER	PTHR32057	PROTEIN ADENYLYLTRANSFERASE SELO, MITOCHONDRIAL	coord: 54..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G004770.1	Lsi06G004770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016779	nucleotidyltransferase activity