Lsi06G004710 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G004710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr06: 5449009 .. 5450441 (-)
RNA-Seq Expression	Lsi06G004710
Synteny	Lsi06G004710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTAAGAGAGATTGACGAACCGCCTGTAAGATTGGAAATTGAAATTTAGCCTCAAGTCGTGCCTTTCTAGCCAAAAGCTTCCATGGTTCACAGAAGGAAACAAAGACAAGCAATGAAGAATTGACAGTGATGAATTGATTGTTGAACATGCCTGGATTCATTATTGGAACGAAATGCTTAAGAAGAGAAATGTAGGAGTAACTTGATGCAGATAATGCCGCTAGGTAACCTTTCCTGGATGTCTCTAAGAGAGGTTTACTTACCTGTTAACAATGTGAATCTTTATTATGAAGATGCCAAATGGTATATTTATATGAATTATAGAAAGTGGATACCTCTGGCCCATTTGCGAGTGAATGTACAAGGATGTCAATGGTTCCAAAATCCTTCTTTACTGATTCTGCTACTTCCTGAAATCCATTAAAATCACTGATATTATGGAAGAAAAAATACAGACCTGAAAGTTTAAGCTTATAAGTTAGGACGTATTTCATCTTAAAACTCCTCCTCACTTGTAGTTTGAAAATGAGCACGAGGCACACAAGTGATTGTTAATCTTAATTGGGGAGTACAATATATTACAAAGTCAGGAGATTATTTTGAACTGCATTATACTAGTACTAAATCAATGAGCTCAAGTTGATAGGTTAGAGTACAATTTGTCTAAAAGAATTCTGGGAACTGTATGAACTCAAATAAACAAAGTGAAGATTACTTTCATTAGAATGTACTAAATCAAAGGAATTAGTTTAAGTTGAAAGAGTGATGCATGTGCAAGGGAAAGTTCAGTACCTGAACTGTCCAATTAGTGGAACCTGCATACCGCTTATTTGTTTTTATCTGCATGAAATGAAATCAACACATGTTTATGATCTTTCGGTATGACTAATTGAATACCACGTGCGTTGCACGTGTTTATGATCTTTTGGTATGATTACAAAACAACAGGTAATGTCTGGCCTACATCTTCAGGAACATCCTCAGGACTGTCAAAAACTGCATCCAAGGGATATATTTTGGTGATCTCCATTAAAGATCCATCTGGTAACCTGAAACATCAAATTCTCAATAGCTGAAGGTACTATTAAGTTTTCCTCAGGTAAAATGTATTCAATATAGTTAGATATCTTACGCTCGAGATTCGTCAAACTTTCCACGTCGCAAGCTGGATTCAAAGATGTTTAAAGCCTAGATAAGATAACTCTAAACTCTTAATGAGAAGCTTAATAAAACATTTCCAAACCAGAGAAAAATTGCTATGGGATTATACTTACAGGCACCCACGTACCAACAATAATTTCAGCCCCGGCAGCAGCAAGAGATTTTGCTATTGCCCAACCATATCCATTATCATCAGCTACACCAGCAATAAATGCCCGCTTACCTAAACAAAATCCAAGTGTAGCTAAATTTGCTGAACTGATTTAG

mRNA sequence

ATGTATAAAGTGGATACCTCTGGCCCATTTGCGAGCACCCACGTACCAACAATAATTTCAGCCCCGGCAGCAGCAAGAGATTTTGCTATTGCCCAACCATATCCATTATCATCAGCTACACCAGCAATAAATGCCCGCTTACCTAAACAAAATCCAAGTGTAGCTAAATTTGCTGAACTGATTTAG

Coding sequence (CDS)

ATGTATAAAGTGGATACCTCTGGCCCATTTGCGAGCACCCACGTACCAACAATAATTTCAGCCCCGGCAGCAGCAAGAGATTTTGCTATTGCCCAACCATATCCATTATCATCAGCTACACCAGCAATAAATGCCCGCTTACCTAAACAAAATCCAAGTGTAGCTAAATTTGCTGAACTGATTTAG

Protein sequence

MYKVDTSGPFASTHVPTIISAPAAARDFAIAQPYPLSSATPAINARLPKQNPSVAKFAELI

Homology

[Close]

BLAST of Lsi06G004710 vs. ExPASy TrEMBL
Match: A0A2P2LR78 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 33/38 (86.84%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 11 ASTHVPTIISAPAAARDFAIAQPYPLSSATPAINARLP 49
          A THVPT ISAPAAARDFAIA PYPLSSATPA N RLP
Sbjct: 4  AGTHVPTRISAPAAARDFAIAHPYPLSSATPATNTRLP 41

[Close]

BLAST of Lsi06G004710 vs. ExPASy TrEMBL
Match: A0A0V0XL08 (Uncharacterized protein (Fragment) OS=Trichinella patagoniensis OX=990121 GN=T12_197 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.4e-06
Identity = 32/38 (84.21%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 11 ASTHVPTIISAPAAARDFAIAQPYPLSSATPAINARLP 49
          A THVPT ISAPAAAR  AIA PYPLSSATPAINA LP
Sbjct: 4  AGTHVPTRISAPAAARALAIAHPYPLSSATPAINALLP 41

[Close]

BLAST of Lsi06G004710 vs. NCBI nr
Match: KRX88682.1 (hypothetical protein T12_197, partial [Trichinella patagoniensis])

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-05
Identity = 32/38 (84.21%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 11 ASTHVPTIISAPAAARDFAIAQPYPLSSATPAINARLP 49
          A THVPT ISAPAAAR  AIA PYPLSSATPAINA LP
Sbjct: 4  AGTHVPTRISAPAAARALAIAHPYPLSSATPAINALLP 41

The following BLAST results are available for this feature:

BLAST of Lsi06G004710 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G004710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P2LR78	2.6e-07	86.84	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A0V0XL08	6.4e-06	84.21	Uncharacterized protein (Fragment) OS=Trichinella patagoniensis OX=990121 GN=T12...	[more]

BLAST of Lsi06G004710 vs. NCBI nr


Match Name	E-value	Identity	Description
KRX88682.1	1.3e-05	84.21	hypothetical protein T12_197, partial [Trichinella patagoniensis]	[more]

BLAST of Lsi06G004710 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G004710.1	Lsi06G004710.1	mRNA