Lsi06G003410 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G003410
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	G protein gamma domain-containing protein
Location	chr06: 3787917 .. 3789992 (-)
RNA-Seq Expression	Lsi06G003410
Synteny	Lsi06G003410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCGGTCGGTTAACTCTTCATCAGTGGCTTCACTACCACCACCTAGTCCGAAATCTCCGCCTGAGTACCCGGATTTGTATGGGAAGCGTCGAGAGATAGCTAAGATTCAGACACTTGAAAGAGAAATTGGTTTCCTTGAGGTGAGTTCCAATTTGAAAATGATTGTCGTTGTCTTCTACATCTCTTCTTCCTCTTCGTCTTTTCTCCCCCCTTTGAAGTTCAATGGCATAGTGACTTCGGAAAGCTATTGTACAATTTCAAGCGTCTCTGTTTTTGTTATTAGCTTTGCTAATTAGGCACAAAATTTCGAAGTCCTACATGCAGATCTATTTGTTTGATTTAGGGAGCTAGTTTCTCACAGTTTTAAAACAGATTTAATAAGCTTAGAACTTCCATTTCGTGGCATGAAGCTTCTTCCAGACCTTCATGGAAAACACAGCCTAGGAAAAATCTAAGAAAATTCTTTTGCTCCTAGATTTCTTGGGATGCCTTCTCTAGAGCAAGGGAAACGAAAAAGAAGAAAGAAATGAATCTCTATCCCTGTTTTCTAAAATTTGTGGAATTTGAATATTTAGGACTCAGATGTCTTCTCGCTTTCAATTTCCTCTAAAAAGCTTATTTCTTTAGAGTTAAGTGCAATTTTTTCCCTCCGTTATGGGATCTTTTGGCTAGAAAAATGCCACATCTTACATGATAAATTGAAATAAAATCGTGTTCACGCATGTCATGAGGCACAATTCTCTGTTTCAAATTCACCATGGCTGCGTTTATTATTAATTCAATGCGTTACATGTTTCTAGTTTTCTTGAAACAGGATGAACTAAAATCCATTCAAAGTCTTGAACCCGTCTCAATATGCTGCAAAGAGTATGTTTCTTTTAAATTTCGTCATCTTTTAATTCATGTACACAATCAATTGGGAGATCTATCCATCCACTCTTTTGCTTCTACTGTTGATTAACATCACATTTTTGCAGGATTAGTGACTTTGTAACGGCAAATTCAGATCCATTGACACCTACGTAAGTGTTCATTTTGAGTAAACCAAGACTGCATAAATTTAAGATTGCATTGATTATGATCCAATTCCATTTTTATTTTAAAGCAGATGTAAGGCAAAACATCAGCGCATCTGGAAATGGTTATGGTTGAACTTTCAACTTAAAAATTCTGATTTCAGCTTATCACTGAGAATGTTTATGTATATAACATTTATGTTACGATTGTCGTGCAGTGGGTTTCCTTGCTTTAATTTGTCGTGGCTGTGCTGCTGCTCTTGCACCGGGTGCTCTGTCTACGTAGATATGCCTCGCTGTTGTGATTGCAGACCATGTAACTTCCCATCATGTTTTGGGTGTTGTAGTATGCCAAAGTGTAGTTTCTTCTCTTGTCCCTCCTTGTCCTGCTGTAGAAACATCTCGTGCCGTAGATTGTGTTGTTTTTTATCATTACCTTCTATCTCATGCCCTCACTGTTGCAGCTGCTGCGAATGCAAATGCAGCTGTAAGTGCTCTTTTCCAAAATGTTCACAGGTACCTTCTTGTCGCCTCTGCACAAAGTCTTGTTGTAACCCCTGCTCTTTATGTTGTTGCTTTTAGTTCGGCAACAACGCTATTCCATAAAGTTATTTTGATCTTCTACATGATAAAATCAATGTACATTATGATGAATATCTTCTACTTTTTATTAATTTTGTCCAAATTTATTAGTAGGAATACGATTGGTATGACTCTTAAATTATTTAAGACAATATTTTGAGTTGTTTAATCATGGGCCTACTGCTTGATTATTGATGTAAATCATTGGAATTGGCTGGCCACAATTTGTCTATATGGTTATAGAGTTGTCTTATCACATGTTACTCTTGTGAAAATAGCCTCCTCCTGTTTGTTTAGGCCCTAAATTAGTAATCGTACTGGAGGCTTATGGATAATCTGTGTCGGTCTGTATCTGGTACTAGTAGCACGGCCCCAGATGCTTTTGCATCAAGGGCTGAGAGGTATCGTGCTTATGTTCTTTATGATTGCGGCGGGACTGGATACCCACGTCTGATCCAAGTTCCATTTTAG

mRNA sequence

ATGGCTGCTCGGTCGGTTAACTCTTCATCAGTGGCTTCACTACCACCACCTAGTCCGAAATCTCCGCCTGAGTACCCGGATTTGTATGGGAAGCGTCGAGAGATAGCTAAGATTCAGACACTTGAAAGAGAAATTGGTTTCCTTGAGGATGAACTAAAATCCATTCAAAGTCTTGAACCCGTCTCAATATGCTGCAAAGAGATTAGTGACTTTGTAACGGCAAATTCAGATCCATTGACACCTACTGTAGTTTCTTCTCTTGTCCCTCCTTGTCCTGCTGTAGAAACATCTCGTGCCGTAGATTGTGTTGTTTTTTATCATTACCTTCTATCTCATGCCCTCACTGTTGCAGCTGCTGCGAATGCAAATGCAGCTGTAAGTGCTCTTTTCCAAAATGTTCACAGTAGCACGGCCCCAGATGCTTTTGCATCAAGGGCTGAGAGGTATCGTGCTTATGTTCTTTATGATTGCGGCGGGACTGGATACCCACGTCTGATCCAAGTTCCATTTTAG

Coding sequence (CDS)

ATGGCTGCTCGGTCGGTTAACTCTTCATCAGTGGCTTCACTACCACCACCTAGTCCGAAATCTCCGCCTGAGTACCCGGATTTGTATGGGAAGCGTCGAGAGATAGCTAAGATTCAGACACTTGAAAGAGAAATTGGTTTCCTTGAGGATGAACTAAAATCCATTCAAAGTCTTGAACCCGTCTCAATATGCTGCAAAGAGATTAGTGACTTTGTAACGGCAAATTCAGATCCATTGACACCTACTGTAGTTTCTTCTCTTGTCCCTCCTTGTCCTGCTGTAGAAACATCTCGTGCCGTAGATTGTGTTGTTTTTTATCATTACCTTCTATCTCATGCCCTCACTGTTGCAGCTGCTGCGAATGCAAATGCAGCTGTAAGTGCTCTTTTCCAAAATGTTCACAGTAGCACGGCCCCAGATGCTTTTGCATCAAGGGCTGAGAGGTATCGTGCTTATGTTCTTTATGATTGCGGCGGGACTGGATACCCACGTCTGATCCAAGTTCCATTTTAG

Protein sequence

MAARSVNSSSVASLPPPSPKSPPEYPDLYGKRREIAKIQTLEREIGFLEDELKSIQSLEPVSICCKEISDFVTANSDPLTPTVVSSLVPPCPAVETSRAVDCVVFYHYLLSHALTVAAAANANAAVSALFQNVHSSTAPDAFASRAERYRAYVLYDCGGTGYPRLIQVPF

Homology

[Close]

BLAST of Lsi06G003410 vs. ExPASy Swiss-Prot
Match: Q6AWT8 (Guanine nucleotide-binding protein subunit gamma 3 OS=Arabidopsis thaliana OX=3702 GN=GG3 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-24
Identity = 58/82 (70.73%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 2  AARSVNSSSVA--SLPPPSPKSPPEYPDLYGKRREIAKIQTLEREIGFLEDELKSIQSLE 61
          AA  V+SSS+A  SLPPP PKSPPEYPDLYGKRRE A++Q LEREIGFLE E+K I+ ++
Sbjct: 16 AAGGVSSSSLAPSSLPPPRPKSPPEYPDLYGKRREAARVQMLEREIGFLEGEIKFIEGVQ 75

Query: 62 PVSICCKEISDFVTANSDPLTP 82
          P S C KE+SDFV ANSDPL P
Sbjct: 76 PASRCIKEVSDFVVANSDPLIP 97

[Close]

BLAST of Lsi06G003410 vs. ExPASy Swiss-Prot
Match: Q93V47 (Guanine nucleotide-binding protein subunit gamma 2 OS=Arabidopsis thaliana OX=3702 GN=GG2 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.5e-04
Identity = 23/55 (41.82%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 27 DLYGKRREIAKIQTLEREIGFLEDELKSIQSLEPVSICCKEISDFVTANSDPLTP 82
          D  GK R  A+++ LE+E  FLE+EL+ ++ ++  S  CKE  D V +  DPL P
Sbjct: 18 DTRGKHRIQAELKRLEQEARFLEEELEQLEKMDNASASCKEFLDSVDSKPDPLLP 72

[Close]

BLAST of Lsi06G003410 vs. ExPASy Swiss-Prot
Match: Q9FDX9 (Guanine nucleotide-binding protein subunit gamma 1 OS=Arabidopsis thaliana OX=3702 GN=GG1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.6e-04
Identity = 20/52 (38.46%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 30 GKRREIAKIQTLEREIGFLEDELKSIQSLEPVSICCKEISDFVTANSDPLTP 82
          GK R +A++  +E+E+ FLE ELK +++ + VS  C+E+   +    DPL P
Sbjct: 19 GKHRILAELARVEQEVAFLEKELKEVENTDIVSTVCEELLSVIEKGPDPLLP 70

[Close]

BLAST of Lsi06G003410 vs. ExPASy TrEMBL
Match: A0A5A7UQL3 (Guanine nucleotide-binding protein subunit gamma 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001550 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 5.4e-34
Identity = 95/146 (65.07%), Postives = 101/146 (69.18%), Query Frame = 0


Query: 1   MAARSVNSSSVASLPPPSPKSPPEYPDLYGKRREIAKIQTLEREIGFLEDELKSIQSLEP 60
           MAARSV SSSV+SLPPPSPKSPPEYPDLYGKRREIA IQTLEREIGFLEDELKS+QSL+P
Sbjct: 1   MAARSVYSSSVSSLPPPSPKSPPEYPDLYGKRREIANIQTLEREIGFLEDELKSLQSLQP 60

Query: 61  VSICCKEISDFVTANSDPLTPTVVSSLVP----------PCPAVETSRAVDCVVFYHYLL 120
           VSICCKEI+DFVTANSDPLT T                 PC  +       C     YL 
Sbjct: 61  VSICCKEINDFVTANSDPLTSTCRVKQQRCRIWKWLCGFPCFNLSWLCCCSCTECSVYLE 120

Query: 121 SHALTVAA--AANANAAVSALFQNVH 135
                     AANANAAV+ALFQNVH
Sbjct: 121 MPRCCGCKPFAANANAAVTALFQNVH 146

[Close]

BLAST of Lsi06G003410 vs. ExPASy TrEMBL
Match: A0A0A0LZK9 (G protein gamma domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G597050 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.0e-32
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MAARSVNSSSVASLPPPSPKSPPEYPDLYGKRREIAKIQTLEREIGFLEDELKSIQSLEP 60
          MAARSV SSSV+SLPPPSPKSPPEYPDLYGKRREIA IQTLEREIGFLEDELKS+QSL+P
Sbjct: 1  MAARSVYSSSVSSLPPPSPKSPPEYPDLYGKRREIANIQTLEREIGFLEDELKSLQSLQP 60

Query: 61 VSICCKEISDFVTANSDPLTPT 83
          VSICCKEI+DFVT NSDPLTPT
Sbjct: 61 VSICCKEINDFVTTNSDPLTPT 82

[Close]

BLAST of Lsi06G003410 vs. ExPASy TrEMBL
Match: A0A1S4DYE4 (guanine nucleotide-binding protein subunit gamma 3-like OS=Cucumis melo OX=3656 GN=LOC103492372 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.9e-32
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MAARSVNSSSVASLPPPSPKSPPEYPDLYGKRREIAKIQTLEREIGFLEDELKSIQSLEP 60
          MAARSV SSSV+SLPPPSPKSPPEYPDLYGKRREIA IQTLEREIGFLEDELKS+QSL+P
Sbjct: 1  MAARSVYSSSVSSLPPPSPKSPPEYPDLYGKRREIANIQTLEREIGFLEDELKSLQSLQP 60

Query: 61 VSICCKEISDFVTANSDPLTPT 83
          VSICCKEI+DFVTANSDPLT T
Sbjct: 61 VSICCKEINDFVTANSDPLTST 82

[Close]

BLAST of Lsi06G003410 vs. ExPASy TrEMBL
Match: A0A6J1D2Z2 (guanine nucleotide-binding protein subunit gamma 3 OS=Momordica charantia OX=3673 GN=LOC111016512 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 8.5e-32
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MAARSVNSSSVASLPPPSPKSPPEYPDLYGKRREIAKIQTLEREIGFLEDELKSIQSLEP 60
          MA RSV SSSV SLPPPSPKSPPEYPDLYGKRREIAKIQTLEREIGFLE+ELKS+QSL+P
Sbjct: 1  MATRSVYSSSVPSLPPPSPKSPPEYPDLYGKRREIAKIQTLEREIGFLEEELKSVQSLQP 60

Query: 61 VSICCKEISDFVTANSDPLTPT 83
          VSICCKEISDFV A+SDPLTPT
Sbjct: 61 VSICCKEISDFVMASSDPLTPT 82

[Close]

BLAST of Lsi06G003410 vs. ExPASy TrEMBL
Match: A0A6J1F450 (guanine nucleotide-binding protein subunit gamma 3-like OS=Cucurbita moschata OX=3662 GN=LOC111440055 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MAARSVNSSSVASLPPPSPKSPPEYPDLYGKRREIAKIQTLEREIGFLEDELKSIQSLEP 60
          MAARSV SSSV SLPPP PKSPPEYPDLYGKRREIAKI  LEREIG LEDELKS++SL+P
Sbjct: 1  MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP 60

Query: 61 VSICCKEISDFVTANSDPLTPT 83
          VSICCKEISDFVT NSDPLTPT
Sbjct: 61 VSICCKEISDFVTVNSDPLTPT 82

[Close]

BLAST of Lsi06G003410 vs. NCBI nr
Match: KAE8653458.1 (hypothetical protein Csa_007447 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 2.5e-46
Identity = 110/137 (80.29%), Postives = 115/137 (83.94%), Query Frame = 0


Query: 1   MAARSVNSSSVASLPPPSPKSPPEYPDLYGKRREIAKIQTLEREIGFLEDELKSIQSLEP 60
           MAARSV SSSV+SLPPPSPKSPPEYPDLYGKRREIA IQTLEREIGFLEDELKS+QSL+P
Sbjct: 1   MAARSVYSSSVSSLPPPSPKSPPEYPDLYGKRREIANIQTLEREIGFLEDELKSLQSLQP 60

Query: 61  VSICCKEISDF---VTANSDPLTPTVVSSLVPPCPAVETSRAVDCVVFYHYLLSHALTVA 120
           VSICCKE  D    V      +  +VVSSLVP CPAVETS AVDCVVFYHYL SH  TVA
Sbjct: 61  VSICCKESIDAYVRVQFFGVVVCRSVVSSLVPLCPAVETSHAVDCVVFYHYLQSHVPTVA 120

Query: 121 AAANANAAVSALFQNVH 135
            AANANAAVSALFQNVH
Sbjct: 121 VAANANAAVSALFQNVH 137

[Close]

BLAST of Lsi06G003410 vs. NCBI nr
Match: KAG7021974.1 (Guanine nucleotide-binding protein subunit gamma 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-38
Identity = 112/206 (54.37%), Postives = 115/206 (55.83%), Query Frame = 0


Query: 1   MAARSVNSSSVASLPPPSPKSPPEYPDLYGKRREIAKIQTLEREIGFLEDELKSIQSLEP 60
           MAARSV SSSV SLPPP PKSPPEYPDLYGKRREIAKI  LEREIG LEDELKS++SL+P
Sbjct: 1   MAARSVYSSSVPSLPPPCPKSPPEYPDLYGKRREIAKIHMLEREIGILEDELKSVESLQP 60

Query: 61  VSICCKEISDFVTANSDPLTPT-------------------------------------- 120
           VS CCKEISDFVT NSDPLTPT                                      
Sbjct: 61  VSTCCKEISDFVTVNSDPLTPTYEQCPFFFQADVGQNISDAASGSGYADFLALICHGCAA 120

Query: 121 ----------------------------------VVSSLVPPCPAVETSRAVDCVVFYHY 135
                                             VVSS VP   AVETSRAVD V F HY
Sbjct: 121 ALALDALSPLRCLAPVFANHATSHHVQTAVISRSVVSSPVPLHFAVETSRAVDGVAFCHY 180

[Close]

BLAST of Lsi06G003410 vs. NCBI nr
Match: KAA0055769.1 (guanine nucleotide-binding protein subunit gamma 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-33
Identity = 95/146 (65.07%), Postives = 101/146 (69.18%), Query Frame = 0


Query: 1   MAARSVNSSSVASLPPPSPKSPPEYPDLYGKRREIAKIQTLEREIGFLEDELKSIQSLEP 60
           MAARSV SSSV+SLPPPSPKSPPEYPDLYGKRREIA IQTLEREIGFLEDELKS+QSL+P
Sbjct: 1   MAARSVYSSSVSSLPPPSPKSPPEYPDLYGKRREIANIQTLEREIGFLEDELKSLQSLQP 60

Query: 61  VSICCKEISDFVTANSDPLTPTVVSSLVP----------PCPAVETSRAVDCVVFYHYLL 120
           VSICCKEI+DFVTANSDPLT T                 PC  +       C     YL 
Sbjct: 61  VSICCKEINDFVTANSDPLTSTCRVKQQRCRIWKWLCGFPCFNLSWLCCCSCTECSVYLE 120

Query: 121 SHALTVAA--AANANAAVSALFQNVH 135
                     AANANAAV+ALFQNVH
Sbjct: 121 MPRCCGCKPFAANANAAVTALFQNVH 146

[Close]

BLAST of Lsi06G003410 vs. NCBI nr
Match: XP_038879225.1 (guanine nucleotide-binding protein subunit gamma 3-like [Benincasa hispida] >XP_038879226.1 guanine nucleotide-binding protein subunit gamma 3-like [Benincasa hispida] >XP_038879227.1 guanine nucleotide-binding protein subunit gamma 3-like [Benincasa hispida] >XP_038879228.1 guanine nucleotide-binding protein subunit gamma 3-like [Benincasa hispida] >XP_038879229.1 guanine nucleotide-binding protein subunit gamma 3-like [Benincasa hispida] >XP_038879230.1 guanine nucleotide-binding protein subunit gamma 3-like [Benincasa hispida] >XP_038879231.1 guanine nucleotide-binding protein subunit gamma 3-like [Benincasa hispida] >XP_038879232.1 guanine nucleotide-binding protein subunit gamma 3-like [Benincasa hispida])

HSP 1 Score: 151.4 bits (381), Expect = 7.2e-33
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MAARSVNSSSVASLPPPSPKSPPEYPDLYGKRREIAKIQTLEREIGFLEDELKSIQSLEP 60
          MAARSV SSSV SLPPPSPKSPPEYPDLYGKRRE AKIQTLEREIGFLEDELKSIQSL+P
Sbjct: 1  MAARSVYSSSVPSLPPPSPKSPPEYPDLYGKRRETAKIQTLEREIGFLEDELKSIQSLQP 60

Query: 61 VSICCKEISDFVTANSDPLTPT 83
          VSICCKEISDF+TANSDPLTPT
Sbjct: 61 VSICCKEISDFLTANSDPLTPT 82

[Close]

BLAST of Lsi06G003410 vs. NCBI nr
Match: XP_011660020.1 (guanine nucleotide-binding protein subunit gamma 3 [Cucumis sativus] >XP_031740139.1 guanine nucleotide-binding protein subunit gamma 3 [Cucumis sativus] >XP_031740141.1 guanine nucleotide-binding protein subunit gamma 3 [Cucumis sativus] >XP_031740148.1 guanine nucleotide-binding protein subunit gamma 3 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 2.1e-32
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MAARSVNSSSVASLPPPSPKSPPEYPDLYGKRREIAKIQTLEREIGFLEDELKSIQSLEP 60
          MAARSV SSSV+SLPPPSPKSPPEYPDLYGKRREIA IQTLEREIGFLEDELKS+QSL+P
Sbjct: 1  MAARSVYSSSVSSLPPPSPKSPPEYPDLYGKRREIANIQTLEREIGFLEDELKSLQSLQP 60

Query: 61 VSICCKEISDFVTANSDPLTPT 83
          VSICCKEI+DFVT NSDPLTPT
Sbjct: 61 VSICCKEINDFVTTNSDPLTPT 82

[Close]

BLAST of Lsi06G003410 vs. TAIR 10
Match: AT5G20635.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: keratin filament, chloroplast; CONTAINS InterPro DOMAIN/s: Keratin, high sulphur B2 protein (InterPro:IPR002494); Has 6153 Blast hits to 2882 proteins in 265 species: Archae - 6; Bacteria - 47; Metazoa - 4777; Fungi - 68; Plants - 187; Viruses - 30; Other Eukaryotes - 1038 (source: NCBI BLink). )

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-25
Identity = 58/82 (70.73%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 2  AARSVNSSSVA--SLPPPSPKSPPEYPDLYGKRREIAKIQTLEREIGFLEDELKSIQSLE 61
          AA  V+SSS+A  SLPPP PKSPPEYPDLYGKRRE A++Q LEREIGFLE E+K I+ ++
Sbjct: 16 AAGGVSSSSLAPSSLPPPRPKSPPEYPDLYGKRREAARVQMLEREIGFLEGEIKFIEGVQ 75

Query: 62 PVSICCKEISDFVTANSDPLTP 82
          P S C KE+SDFV ANSDPL P
Sbjct: 76 PASRCIKEVSDFVVANSDPLIP 97

[Close]

BLAST of Lsi06G003410 vs. TAIR 10
Match: AT3G22942.1 (G-protein gamma subunit 2 )

HSP 1 Score: 47.8 bits (112), Expect = 1.0e-05
Identity = 23/55 (41.82%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 27 DLYGKRREIAKIQTLEREIGFLEDELKSIQSLEPVSICCKEISDFVTANSDPLTP 82
          D  GK R  A+++ LE+E  FLE+EL+ ++ ++  S  CKE  D V +  DPL P
Sbjct: 18 DTRGKHRIQAELKRLEQEARFLEEELEQLEKMDNASASCKEFLDSVDSKPDPLLP 72

[Close]

BLAST of Lsi06G003410 vs. TAIR 10
Match: AT3G63420.1 (Ggamma-subunit 1 )

HSP 1 Score: 45.8 bits (107), Expect = 4.0e-05
Identity = 20/52 (38.46%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 30 GKRREIAKIQTLEREIGFLEDELKSIQSLEPVSICCKEISDFVTANSDPLTP 82
          GK R +A++  +E+E+ FLE ELK +++ + VS  C+E+   +    DPL P
Sbjct: 19 GKHRILAELARVEQEVAFLEKELKEVENTDIVSTVCEELLSVIEKGPDPLLP 70

[Close]

BLAST of Lsi06G003410 vs. TAIR 10
Match: AT3G63420.2 (Ggamma-subunit 1 )

HSP 1 Score: 45.8 bits (107), Expect = 4.0e-05
Identity = 20/52 (38.46%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 30 GKRREIAKIQTLEREIGFLEDELKSIQSLEPVSICCKEISDFVTANSDPLTP 82
          GK R +A++  +E+E+ FLE ELK +++ + VS  C+E+   +    DPL P
Sbjct: 19 GKHRILAELARVEQEVAFLEKELKEVENTDIVSTVCEELLSVIEKGPDPLLP 70

The following BLAST results are available for this feature:

BLAST of Lsi06G003410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6AWT8	2.8e-24	70.73	Guanine nucleotide-binding protein subunit gamma 3 OS=Arabidopsis thaliana OX=37...	[more]
Q93V47	1.5e-04	41.82	Guanine nucleotide-binding protein subunit gamma 2 OS=Arabidopsis thaliana OX=37...	[more]
Q9FDX9	5.6e-04	38.46	Guanine nucleotide-binding protein subunit gamma 1 OS=Arabidopsis thaliana OX=37...	[more]

BLAST of Lsi06G003410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UQL3	5.4e-34	65.07	Guanine nucleotide-binding protein subunit gamma 3-like OS=Cucumis melo var. mak...	[more]
A0A0A0LZK9	1.0e-32	91.46	G protein gamma domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G59...	[more]
A0A1S4DYE4	2.9e-32	91.46	guanine nucleotide-binding protein subunit gamma 3-like OS=Cucumis melo OX=3656 ...	[more]
A0A6J1D2Z2	8.5e-32	90.24	guanine nucleotide-binding protein subunit gamma 3 OS=Momordica charantia OX=367...	[more]
A0A6J1F450	1.2e-30	87.80	guanine nucleotide-binding protein subunit gamma 3-like OS=Cucurbita moschata OX...	[more]

BLAST of Lsi06G003410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653458.1	2.5e-46	80.29	hypothetical protein Csa_007447 [Cucumis sativus]	[more]
KAG7021974.1	1.1e-38	54.37	Guanine nucleotide-binding protein subunit gamma 3, partial [Cucurbita argyrospe...	[more]
KAA0055769.1	1.1e-33	65.07	guanine nucleotide-binding protein subunit gamma 3-like [Cucumis melo var. makuw...	[more]
XP_038879225.1	7.2e-33	93.90	guanine nucleotide-binding protein subunit gamma 3-like [Benincasa hispida] >XP_...	[more]
XP_011660020.1	2.1e-32	91.46	guanine nucleotide-binding protein subunit gamma 3 [Cucumis sativus] >XP_0317401...	[more]

BLAST of Lsi06G003410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20635.1	2.0e-25	70.73	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G22942.1	1.0e-05	41.82	G-protein gamma subunit 2	[more]
AT3G63420.1	4.0e-05	38.46	Ggamma-subunit 1	[more]
AT3G63420.2	4.0e-05	38.46	Ggamma-subunit 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 31..58
None	No IPR available	SMART	SM01224	G_gamma_2	coord: 34..105 e-value: 1.0E-5 score: 35.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR32378	GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT GAMMA 3	coord: 1..82
None	No IPR available	PANTHER	PTHR32378:SF10	GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT GAMMA 3	coord: 1..82
IPR015898	G-protein gamma-like domain	PFAM	PF00631	G-gamma	coord: 39..83 e-value: 3.3E-8 score: 33.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G003410.1	Lsi06G003410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G protein-coupled receptor signaling pathway