Lsi06G003080 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G003080
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr06: 3522795 .. 3526072 (+)
RNA-Seq ExpressionLsi06G003080
SyntenyLsi06G003080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTGATGCCCAATTAATTGTAATGAATATATCACAACGAAAACGGCAAGCCTAGTCATTTCAAAATAGAGTAATTGTAATGGTAGTTTTTTTAGGGTATAATTAAGTCTATAACAAAATTTTGAAATAATTATAAATACAGCAAAATCTATTAGTCATAAATTATATCGCTGATAGACTCCTATTAATGTTAGACTCCGGCCAGTGATATTATCACTAATAGACTTGGAGAGTTAGATTTAAATTTTGTTATATATGCAGATTATTTTGCATTGTGCTATATCTGCTAATACTTTGGGCCTCATTGATATATTTGCAAATGTCCCTTTAAAATATACCCATCATCTTTATATATGTTTTAAAAAGAATATCTTTTCCATTAAACTAAATAATAGAAATTAATTTAATGTTGATGTGTAGAGATTAGAAAGGGTTTGTGTGATATTATTTATAATCATATAGAACATTAAGATCATTATTACCATTTATTTGGTCTTAAAAGATATTGTTAAAATTATTTAGTTAATCAACTGTTTTTTTATTCCAAACAGCAAAAAGGACGATTTCAAATGAACATTAGACAGACCTAAACGACCATTAGAAACAACATGAGAAAGAAAAGGAGGCCAATCTTCAATCCATACTTGATCAACCCGGGCAACAAAAGTGTTATTTTCTAGAAGATGAGCTGCAAAATTGCTAGAGCGGTGAAAAAACTAAAATGAGCATGCCTCAACCAGATTCAAATTCCGTTTCACAGAGGAGAATGAGTAGCCCATCTCCGAAATGTCCTCAATCATCGAGGTAAGCACTCTAACAACCTGAATGCAATATGATTCAACTATTAAGAACTGAAAACCTATTTATTTCCAAGGCTAGAGAAAGACCAATTTGTACCGCTCATCCCCTTATCCATTTCCAGCATAAGAGATAATCCTCAAACTCGAGAGGCTAAGAGAAATACCCGACCTTTAGCATCCCGAATGATGACCCAACTGAAGCAAGGTGCGAATTTGCAATAAAGCTAGCATCCACATTAACTTTATACCAAAGACCAATCGATGGGGACCAAGGAATAGTCGGATGCGATGCCGACGAAGCCAAACTACTAGTGGACCCAACAACTACCGTTTGAAAAGCTTGGAGGTATTCGGTAGCCCAAGACCCCACATTCAGAGCCTCCGTATTCAGCCAGAATAAATAATCAATTGTTACTCATTAGCTACCATGTTAATTTAGATGAATGATGTTGTAAATGATGTCAAGGATAATCCTCAATTTTTTATATTAGTTATTATGTCAATTTCTATATTCTTTCAATAGAGAAAAAAGAACTCCAACAATAATTTTTTAAACAAAATGTAAAGTGCAAAAGGGTAGAAATGAAACTTTTCAAAGTCTAGATGTATAACTGAAACCTATACAAAAGTACAAAAGAAATTATAATAATTTGACCTAAAAAGCAATATAAATATTTGTAGGACATAGGTCGTTTATAAATTGAGTAAGGTCAAAGTCACTTCCTCCATTCTAAATTCTTTAATACAAACTAAATAAAATCTCTTCAAATAAGATTTGATCCTACGATATATTTTAATAGTTGACCACTCTACTATTGTAAACTAGATTTCATAAAAGTCAATTTACAATCTCAACCTATGATTAATATGAGCTCAAAATTTCCTTTATAACTCATGGATTTTGTTTTGTTTGTTAAAATTGGTTAACATAAAGCTAACTTTTCATTAAATTATTGGTTAATTAACATATGTTACAATTAGTTAACATTAAACTCATTAGCTATACTTTAGCATGTCACTTCTTTTAGTACAATAATTACAAGATGAAGGATCGAACTTCCGACCTTAAAAGAAGAAATACATACTAATTACCATATATTTTTGTACGGATGAGGACAACCAAAATTTTACCGATGAAATAACTTTTTGTTTGCATCACTCCTTCCTTCTCCCTCCCGTACGTTTGCGCTTTCGTCCAATTAGTTCAATACAACAATGTTCTCATACTTCCATGCTTACACTCGTCATTTCTCTCTTACTCGTGCTCTAGTAAAAAAAAAAGGGTTATAAAATTGTTATTCTTAATTATTTTCAAATTTTGGGACAAACAACAATTTTTATATGAAATTTGGGTTATTTGTTATTCACTTGGAGAAATACTATAGACATGAAAGTTTAAACTAATTAACATTATTAATAGGATATTTAACATGAAATATTAGAAATATGAAATTGAAACCCTAATGCTTCTTTAATACAATTTCGTGATGTAAACATAAACTTAGGAAGAAGAAAGCAAAACAGTAGAATTGCCCTAATTCTTCAAACACTGAATCACAACATTTCCAAGCTTCCCTTCATCAATGGCTTCCACCACTTTCTCAATATCTTCTCCAGGGCTCACTTTCTTCGCCCCACTCAACAATTGAGTCCCCACTTCACTCCTCACGAATCGGTAAATCGGGTAAGTGCTGCATTTCTTGATTCTATTTTCCACTTCGAAATCACCATTCTCAAATCTCCCTCTTGCATTTTCAACATCTTTTTCCAATTTCGCCTTTAATTCCTCAAGAAACCCCGGGATTTGCTTGAAAATGGCAATCCCTGTTTCGTTTCCATTCTCGCTTTTGCCTGCTGTAACTCCTTTTAGCGCTTTCTCGACTAAAACTTCCAGTAATTTTGGGATTAGAGTGTAGGATGTGTTGGTTGGATCGTCAATGTAGGAGAAGACCGCCTCGCGCTCGATTACTTGTAATAGGTCTTTCTCGCAGAATCGCGATTCGAGAAGAGATCCATACTCTGCAACGTATAGGGTTTTTTTGATGGTTTGTAGAAGGGCATTTTTCACTACTTCCCTCATATTTTCTTCGTATTGTCTTAAATCGATTGCCTGACAAAGCGCCACCATGTATGTAGCAGACATGAGCTTGAGAATCTCAATGGCTTCGGCGGATTTTCTTGCTGAGATTAGACCTAGAGAGTTTACATCTTGATTGTGTTGTTCTGCACTTTGGACATGGGTTGTGACAGGGTTTGCTAGGTATTGGAGCTCAGAGCAATAAGCAGCCATGGCGATTTCTGCACCTTTGAAGCCGTAGTCCAAGCTATGGTTTGGTCCACCGCTCAAATTAGATGGTAATCCATTGTTGTAATGATCACAGACGAGTTCAGAGAATTGGGCAAACATTAGCTTTCCAATTGCAGCAACGGCGATTCGGAGATTATCCATGGAGACTCCAATTGGGGTTCCTTGA

mRNA sequence

ATGAAAAGCGGTGAAAAAACTAAAATGAGCATGCCTCAACCAGATTCAAATTCCGTTTCACAGAGGAGAATGAGTAGCCCATCTCCGAAATGTCCTCAATCATCGAGGCTAGAGAAAGACCAATTTGTACCGCTCATCCCCTTATCCATTTCCAGCATAAGAGATAATCCTCAAACTCGAGAGGCTAAGAGAAATACCCGACCTTTAGCATCCCGAATGATGACCCAACTGAAGCAAGGAAGAAGAAAGCAAAACAGTAGAATTGCCCTAATTCTTCAAACACTGAATCACAACATTTCCAAGCTTCCCTTCATCAATGGCTTCCACCACTTTCTCAATATCTTCTCCAGGGCTCACTTTCTTCGCCCCACTCAACAATTGAGTCCCCACTTCACTCCTCACGAATCGGTAAATCGGGAGAAGACCGCCTCGCGCTCGATTACTTGTAATAGGTCTTTCTCGCAGAATCGCGATTCGAGAAGAGATCCATACTCTGCAACGTATAGGGTATTGGAGCTCAGAGCAATAAGCAGCCATGGCGATTTCTGCACCTTTGAAGCCGTAGTCCAAGCTATGACGAGTTCAGAGAATTGGGCAAACATTAGCTTTCCAATTGCAGCAACGGCGATTCGGAGATTATCCATGGAGACTCCAATTGGGGTTCCTTGA

Coding sequence (CDS)

ATGAAAAGCGGTGAAAAAACTAAAATGAGCATGCCTCAACCAGATTCAAATTCCGTTTCACAGAGGAGAATGAGTAGCCCATCTCCGAAATGTCCTCAATCATCGAGGCTAGAGAAAGACCAATTTGTACCGCTCATCCCCTTATCCATTTCCAGCATAAGAGATAATCCTCAAACTCGAGAGGCTAAGAGAAATACCCGACCTTTAGCATCCCGAATGATGACCCAACTGAAGCAAGGAAGAAGAAAGCAAAACAGTAGAATTGCCCTAATTCTTCAAACACTGAATCACAACATTTCCAAGCTTCCCTTCATCAATGGCTTCCACCACTTTCTCAATATCTTCTCCAGGGCTCACTTTCTTCGCCCCACTCAACAATTGAGTCCCCACTTCACTCCTCACGAATCGGTAAATCGGGAGAAGACCGCCTCGCGCTCGATTACTTGTAATAGGTCTTTCTCGCAGAATCGCGATTCGAGAAGAGATCCATACTCTGCAACGTATAGGGTATTGGAGCTCAGAGCAATAAGCAGCCATGGCGATTTCTGCACCTTTGAAGCCGTAGTCCAAGCTATGACGAGTTCAGAGAATTGGGCAAACATTAGCTTTCCAATTGCAGCAACGGCGATTCGGAGATTATCCATGGAGACTCCAATTGGGGTTCCTTGA

Protein sequence

MKSGEKTKMSMPQPDSNSVSQRRMSSPSPKCPQSSRLEKDQFVPLIPLSISSIRDNPQTREAKRNTRPLASRMMTQLKQGRRKQNSRIALILQTLNHNISKLPFINGFHHFLNIFSRAHFLRPTQQLSPHFTPHESVNREKTASRSITCNRSFSQNRDSRRDPYSATYRVLELRAISSHGDFCTFEAVVQAMTSSENWANISFPIAATAIRRLSMETPIGVP
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G003080.1Lsi06G003080.1mRNA