Lsi06G002710 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G002710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	PRA1 family protein
Location	chr06: 3061952 .. 3062551 (-)
RNA-Seq Expression	Lsi06G002710
Synteny	Lsi06G002710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGACCTATGGAACAATTCCAACCGAGCCAGTCCTTTCACCGAACCTACATTATACTTCTCGGGCAAGAGAACGTATCGCATCAGGCCTTGGCACACGAAGGCCATGGATGGAGATGATCCAGCCTCAAGATATGAGCTGTCCCTCCTCCTTTTTGCAACTAATCAATAGAATTAAGAACAATGCTGAGTATTTTCGGACGAATTACATTCTTATCATATTATTCATCCTCTTTCTAAGCTTGCTCTGGCAACCCATCTCATTGGTTGTCTTCATCATCTCATTTGTTGCTTGGCTTTACTTATATTTCTTACACGACGAACCATGGGTGGTTCGTGGTAGCGTAGTCGACGACCGATTGGTGATGGTGGTTTTGATGTTAATCACCGTTGCATTGCTTTTGATCACGGATGCAACTAAGAACATTATAATTTCGATGTTCGTCGGTGTGATGGTCGTGTTTGTGCATGGAGCTTTAAAAGGGAGTGAGGATGTTTTCTCTTTGGATGAAGAAGGTTTATCAGAATGTGGAGGTGGAAGAGGGGTTATCAAAATGCCTCTCAAGCATGCTGCCTCCTCTTCTTTCTCTCTTTCATAG

mRNA sequence

ATGGGGACCTATGGAACAATTCCAACCGAGCCAGTCCTTTCACCGAACCTACATTATACTTCTCGGGCAAGAGAACGTATCGCATCAGGCCTTGGCACACGAAGGCCATGGATGGAGATGATCCAGCCTCAAGATATGAGCTGTCCCTCCTCCTTTTTGCAACTAATCAATAGAATTAAGAACAATGCTGAGTATTTTCGGACGAATTACATTCTTATCATATTATTCATCCTCTTTCTAAGCTTGCTCTGGCAACCCATCTCATTGGTTGTCTTCATCATCTCATTTGTTGCTTGGCTTTACTTATATTTCTTACACGACGAACCATGGGTGGTTCGTGGTAGCGTAGTCGACGACCGATTGGTGATGGTGGTTTTGATGTTAATCACCGTTGCATTGCTTTTGATCACGGATGCAACTAAGAACATTATAATTTCGATGTTCGTCGGTGTGATGGTCGTGTTTGTGCATGGAGCTTTAAAAGGGAGTGAGGATGTTTTCTCTTTGGATGAAGAAGGTTTATCAGAATGTGGAGGTGGAAGAGGGGTTATCAAAATGCCTCTCAAGCATGCTGCCTCCTCTTCTTTCTCTCTTTCATAG

Coding sequence (CDS)

ATGGGGACCTATGGAACAATTCCAACCGAGCCAGTCCTTTCACCGAACCTACATTATACTTCTCGGGCAAGAGAACGTATCGCATCAGGCCTTGGCACACGAAGGCCATGGATGGAGATGATCCAGCCTCAAGATATGAGCTGTCCCTCCTCCTTTTTGCAACTAATCAATAGAATTAAGAACAATGCTGAGTATTTTCGGACGAATTACATTCTTATCATATTATTCATCCTCTTTCTAAGCTTGCTCTGGCAACCCATCTCATTGGTTGTCTTCATCATCTCATTTGTTGCTTGGCTTTACTTATATTTCTTACACGACGAACCATGGGTGGTTCGTGGTAGCGTAGTCGACGACCGATTGGTGATGGTGGTTTTGATGTTAATCACCGTTGCATTGCTTTTGATCACGGATGCAACTAAGAACATTATAATTTCGATGTTCGTCGGTGTGATGGTCGTGTTTGTGCATGGAGCTTTAAAAGGGAGTGAGGATGTTTTCTCTTTGGATGAAGAAGGTTTATCAGAATGTGGAGGTGGAAGAGGGGTTATCAAAATGCCTCTCAAGCATGCTGCCTCCTCTTCTTTCTCTCTTTCATAG

Protein sequence

MGTYGTIPTEPVLSPNLHYTSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINRIKNNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVDDRLVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEEGLSECGGGRGVIKMPLKHAASSSFSLS

Homology

[Close]

BLAST of Lsi06G002710 vs. ExPASy Swiss-Prot
Match: Q9C889 (PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.1e-35
Identity = 87/174 (50.00%), Postives = 115/174 (66.09%), Query Frame = 0


Query: 1   MGTYGTIPTEPVLSP--NLHYTSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINR 60
           M  YG IPT    SP  +L Y SRA+ RI SGL TRRPW  M   + M+ P  F   I+R
Sbjct: 1   MTNYGAIPTSSHPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISR 60

Query: 61  IKNNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVD 120
           IK N  YFR NY + +LFILFLSLL+ P SL+V  I  V W++LYFL DEP VV G  +D
Sbjct: 61  IKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQID 120

Query: 121 DRLVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEE 173
           DR V++ L ++TV +LL+T AT NI+ S+    ++V +H A++ S+++F LDEE
Sbjct: 121 DRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLF-LDEE 173

[Close]

BLAST of Lsi06G002710 vs. ExPASy Swiss-Prot
Match: Q9LIC6 (PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.6e-31
Identity = 75/181 (41.44%), Postives = 109/181 (60.22%), Query Frame = 0


Query: 1   MGTYGTIPTEPVLSP--NLHYTSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINR 60
           M  YG IPT    SP  ++   SRA+ RI +GL TRR W  M     M  P        R
Sbjct: 1   MTNYGAIPTSSHASPLVDVESLSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTR 60

Query: 61  IKNNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVD 120
           IK N  YFR NY +++L ++F SL+W P SL+VF +  V W++LYFL DEP  +    +D
Sbjct: 61  IKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQID 120

Query: 121 DRLVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEEGLSECG 180
           DR V++VL ++TV LLL+T+AT NI+ ++  G ++V +H  ++ +ED+F  +E   +E  
Sbjct: 121 DRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEAATTETS 180

[Close]

BLAST of Lsi06G002710 vs. ExPASy Swiss-Prot
Match: Q9FZ63 (PRA1 family protein F1 OS=Arabidopsis thaliana OX=3702 GN=PRA1F1 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.3e-30
Identity = 72/174 (41.38%), Postives = 109/174 (62.64%), Query Frame = 0


Query: 1   MGTYGT-IPTEPVLSPNLHYTSRA-RERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINR 60
           M TYGT   +   L+P L Y +R   +   SGL TRRPW +M+     + P     +I R
Sbjct: 1   MTTYGTNQKSSNDLAPKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATVITR 60

Query: 61  IKNNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVD 120
           I+ N  YF+TNY +++LF +FLSL+W P SL+V +    AWL+LYFL DEP  V    +D
Sbjct: 61  IRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLRDEPLTVFDREID 120

Query: 121 DRLVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEE 173
            R+V++++ +IT+++L +TDA  NI +++  G + V  H A++ +ED+F  DEE
Sbjct: 121 HRIVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEE 174

[Close]

BLAST of Lsi06G002710 vs. ExPASy Swiss-Prot
Match: Q9LIC7 (PRA1 family protein F4 OS=Arabidopsis thaliana OX=3702 GN=PRA1F4 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-26
Identity = 69/181 (38.12%), Postives = 105/181 (58.01%), Query Frame = 0


Query: 1   MGTYGTIPTEPVLSPNLHY--TSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINR 60
           M     I T    SP +++   SRA++RI  GL TRR W  M        P     + +R
Sbjct: 1   MANNDEITTSSHASPAVNHESISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSR 60

Query: 61  IKNNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVD 120
           IK N  YFR+NY ++IL ++F SL+W P SL+VF      W++LYFL D P  V    +D
Sbjct: 61  IKTNLAYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQID 120

Query: 121 DRLVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEEGLSECG 180
           DR V++ L +IT+ LLL+T+AT NI+ ++  G ++V +H  ++ ++D+F  +E   +E  
Sbjct: 121 DRAVLIGLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEEAATTETS 180

[Close]

BLAST of Lsi06G002710 vs. ExPASy Swiss-Prot
Match: Q9FRR1 (PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.9e-25
Identity = 64/168 (38.10%), Postives = 108/168 (64.29%), Query Frame = 0


Query: 20  TSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINRIKNNAEYFRTNYILIILFILF 79
           ++RA++   S + T RPW E++    +S P  + + +  +K+N  YFR NY L +L I+F
Sbjct: 33  SARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVF 92

Query: 80  LSLLWQPISLVVFIISFVAWLYLYFLHD--EPWVVRGSVVDDRLVMVVLMLITVALLLIT 139
           L L++ P+S++ FI+ F+ W+ LYF  D  +  V+ G  VDD++V+V+L L+TV  L+ T
Sbjct: 93  LGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYT 152

Query: 140 DATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEE-----GLSECGGG 181
           D  +N+++S+ +G+++V  HGA + ++D+F LDEE     GL   G G
Sbjct: 153 DVGENVLVSLIIGLLIVGAHGAFRNTDDLF-LDEESARRGGLVSAGSG 199

[Close]

BLAST of Lsi06G002710 vs. ExPASy TrEMBL
Match: A0A5D3CFT6 (PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002440 PE=3 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.5e-91
Identity = 181/199 (90.95%), Postives = 189/199 (94.97%), Query Frame = 0


Query: 1   MGTYGTIPTEPVLSPNLHYTSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINRIK 60
           MGTYGTIPTEP+ S NLHYTSRARERIAS LG RRPWMEMIQPQD+S PSSFLQLINRI+
Sbjct: 1   MGTYGTIPTEPLPSSNLHYTSRARERIASALGKRRPWMEMIQPQDLSFPSSFLQLINRIE 60

Query: 61  NNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVDDR 120
           NNAEYF TNYI IILFILFLSLLWQPISLVVFIISF+AWLYLYFLHDEPWVVRGS+VDD+
Sbjct: 61  NNAEYFWTNYIFIILFILFLSLLWQPISLVVFIISFLAWLYLYFLHDEPWVVRGSIVDDQ 120

Query: 121 LVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEEGLSECGGG 180
           LVMVVLMLIT+ALLLITDATKNIIISMFVGV+VVFVHGALKGSED  SLDEEGLSECGGG
Sbjct: 121 LVMVVLMLITIALLLITDATKNIIISMFVGVLVVFVHGALKGSEDALSLDEEGLSECGGG 180

Query: 181 RGVIKMPLKHAASSSFSLS 200
           RGVIKMPLKHAASSSFS S
Sbjct: 181 RGVIKMPLKHAASSSFSRS 199

[Close]

BLAST of Lsi06G002710 vs. ExPASy TrEMBL
Match: A0A1S3BR77 (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103492315 PE=3 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.5e-91
Identity = 181/199 (90.95%), Postives = 189/199 (94.97%), Query Frame = 0


Query: 1   MGTYGTIPTEPVLSPNLHYTSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINRIK 60
           MGTYGTIPTEP+ S NLHYTSRARERIAS LG RRPWMEMIQPQD+S PSSFLQLINRI+
Sbjct: 1   MGTYGTIPTEPLPSSNLHYTSRARERIASALGKRRPWMEMIQPQDLSFPSSFLQLINRIE 60

Query: 61  NNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVDDR 120
           NNAEYF TNYI IILFILFLSLLWQPISLVVFIISF+AWLYLYFLHDEPWVVRGS+VDD+
Sbjct: 61  NNAEYFWTNYIFIILFILFLSLLWQPISLVVFIISFLAWLYLYFLHDEPWVVRGSIVDDQ 120

Query: 121 LVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEEGLSECGGG 180
           LVMVVLMLIT+ALLLITDATKNIIISMFVGV+VVFVHGALKGSED  SLDEEGLSECGGG
Sbjct: 121 LVMVVLMLITIALLLITDATKNIIISMFVGVLVVFVHGALKGSEDALSLDEEGLSECGGG 180

Query: 181 RGVIKMPLKHAASSSFSLS 200
           RGVIKMPLKHAASSSFS S
Sbjct: 181 RGVIKMPLKHAASSSFSRS 199

[Close]

BLAST of Lsi06G002710 vs. ExPASy TrEMBL
Match: A0A0A0LWF7 (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_1G587410 PE=3 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 5.6e-91
Identity = 180/199 (90.45%), Postives = 189/199 (94.97%), Query Frame = 0


Query: 1   MGTYGTIPTEPVLSPNLHYTSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINRIK 60
           MGTYGTIPTEPV   NLHYTSRARERIAS LG RRPWMEMIQPQD+S P+SFLQLINRIK
Sbjct: 1   MGTYGTIPTEPVPLSNLHYTSRARERIASALGKRRPWMEMIQPQDLSFPTSFLQLINRIK 60

Query: 61  NNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVDDR 120
           NNAEYF TNYILI+LFILFLSLLWQPISLVVFIISF+AWLYLYFLHDEPWVVRGS+VDD+
Sbjct: 61  NNAEYFWTNYILIVLFILFLSLLWQPISLVVFIISFLAWLYLYFLHDEPWVVRGSIVDDQ 120

Query: 121 LVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEEGLSECGGG 180
           LVMVVLMLIT+ALLLITDAT NIIISMFVGV+VVFVHGALKGSED FSLDEEGLSE GGG
Sbjct: 121 LVMVVLMLITIALLLITDATMNIIISMFVGVLVVFVHGALKGSEDAFSLDEEGLSEYGGG 180

Query: 181 RGVIKMPLKHAASSSFSLS 200
           RGV+KMPLKHAASSSFSLS
Sbjct: 181 RGVVKMPLKHAASSSFSLS 199

[Close]

BLAST of Lsi06G002710 vs. ExPASy TrEMBL
Match: A0A6J1I8E9 (PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111471903 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.6e-80
Identity = 165/199 (82.91%), Postives = 178/199 (89.45%), Query Frame = 0


Query: 1   MGTYGTIPTEPVLSPNLHYTSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINRIK 60
           M TYGTIPTEPV   NLH TSRARERIAS LGT+RPWMEMIQ QD++ P+S  QLINRIK
Sbjct: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60

Query: 61  NNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVDDR 120
           NNAE+F TNYILIILFILFLSLLWQPIS +VFIIS +AWLYLYFLHDEP+V+RG  VDDR
Sbjct: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRTVDDR 120

Query: 121 LVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEEGLSECGGG 180
           LVMVVL LITVALL  T ATKNIIISM +GV+VVFVHGALKGSED+FSLDEEGLSEC GG
Sbjct: 121 LVMVVLTLITVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGG 180

Query: 181 RGVIKMPLKHAASSSFSLS 200
           RGVIKMPLKHAAS+SFSLS
Sbjct: 181 RGVIKMPLKHAASASFSLS 199

[Close]

BLAST of Lsi06G002710 vs. ExPASy TrEMBL
Match: A0A6J1EDQ8 (PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111433234 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 7.6e-80
Identity = 163/199 (81.91%), Postives = 178/199 (89.45%), Query Frame = 0


Query: 1   MGTYGTIPTEPVLSPNLHYTSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINRIK 60
           M TYGTIPTEPV   NLH TSRARERIAS LGT+RPWMEMIQ QD++ P+S  QLINRIK
Sbjct: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60

Query: 61  NNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVDDR 120
           NNAE+F TNYILIILFILFLSLLWQPIS +VFIIS +AWLYLYFLHDEP+V+RG  VDDR
Sbjct: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDR 120

Query: 121 LVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEEGLSECGGG 180
           LVMVVL L+TVALL  T ATKNIIISM +GV++VFVHGALKGSED+FSLDEEGLSEC GG
Sbjct: 121 LVMVVLSLVTVALLFFTHATKNIIISMSIGVVMVFVHGALKGSEDIFSLDEEGLSECAGG 180

Query: 181 RGVIKMPLKHAASSSFSLS 200
           RGVIKMPLKHAAS+SFSLS
Sbjct: 181 RGVIKMPLKHAASASFSLS 199

[Close]

BLAST of Lsi06G002710 vs. NCBI nr
Match: XP_038878274.1 (PRA1 family protein F2 [Benincasa hispida])

HSP 1 Score: 346.3 bits (887), Expect = 1.8e-91
Identity = 183/199 (91.96%), Postives = 188/199 (94.47%), Query Frame = 0


Query: 1   MGTYGTIPTEPVLSPNLHYTSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINRIK 60
           MGTYGTIPTEP    NLHYTSRARERIASGLGTRRPWMEMIQPQD+S PSSFLQLINRIK
Sbjct: 34  MGTYGTIPTEPAPLSNLHYTSRARERIASGLGTRRPWMEMIQPQDLSFPSSFLQLINRIK 93

Query: 61  NNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVDDR 120
           NN EYFRTNYILIILFILFL LLWQPISLVVFIIS VAWLYLYFLHDEPWVV GSVV+DR
Sbjct: 94  NNGEYFRTNYILIILFILFLCLLWQPISLVVFIISSVAWLYLYFLHDEPWVVCGSVVNDR 153

Query: 121 LVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEEGLSECGGG 180
           LV V LMLITVALLLITDATKNI+ISMF+GV+VVFVHGALKGSEDVFSLDEEGLSECGGG
Sbjct: 154 LVRVALMLITVALLLITDATKNIMISMFIGVLVVFVHGALKGSEDVFSLDEEGLSECGGG 213

Query: 181 RGVIKMPLKHAASSSFSLS 200
           RGVIKMPLKHAASSSFSLS
Sbjct: 214 RGVIKMPLKHAASSSFSLS 232

[Close]

BLAST of Lsi06G002710 vs. NCBI nr
Match: XP_008450846.1 (PREDICTED: PRA1 family protein C [Cucumis melo] >TYK10102.1 PRA1 family protein C [Cucumis melo var. makuwa])

HSP 1 Score: 345.5 bits (885), Expect = 3.0e-91
Identity = 181/199 (90.95%), Postives = 189/199 (94.97%), Query Frame = 0


Query: 1   MGTYGTIPTEPVLSPNLHYTSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINRIK 60
           MGTYGTIPTEP+ S NLHYTSRARERIAS LG RRPWMEMIQPQD+S PSSFLQLINRI+
Sbjct: 1   MGTYGTIPTEPLPSSNLHYTSRARERIASALGKRRPWMEMIQPQDLSFPSSFLQLINRIE 60

Query: 61  NNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVDDR 120
           NNAEYF TNYI IILFILFLSLLWQPISLVVFIISF+AWLYLYFLHDEPWVVRGS+VDD+
Sbjct: 61  NNAEYFWTNYIFIILFILFLSLLWQPISLVVFIISFLAWLYLYFLHDEPWVVRGSIVDDQ 120

Query: 121 LVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEEGLSECGGG 180
           LVMVVLMLIT+ALLLITDATKNIIISMFVGV+VVFVHGALKGSED  SLDEEGLSECGGG
Sbjct: 121 LVMVVLMLITIALLLITDATKNIIISMFVGVLVVFVHGALKGSEDALSLDEEGLSECGGG 180

Query: 181 RGVIKMPLKHAASSSFSLS 200
           RGVIKMPLKHAASSSFS S
Sbjct: 181 RGVIKMPLKHAASSSFSRS 199

[Close]

BLAST of Lsi06G002710 vs. NCBI nr
Match: XP_004135817.1 (PRA1 family protein F2 [Cucumis sativus])

HSP 1 Score: 343.6 bits (880), Expect = 1.2e-90
Identity = 180/199 (90.45%), Postives = 189/199 (94.97%), Query Frame = 0


Query: 1   MGTYGTIPTEPVLSPNLHYTSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINRIK 60
           MGTYGTIPTEPV   NLHYTSRARERIAS LG RRPWMEMIQPQD+S P+SFLQLINRIK
Sbjct: 1   MGTYGTIPTEPVPLSNLHYTSRARERIASALGKRRPWMEMIQPQDLSFPTSFLQLINRIK 60

Query: 61  NNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVDDR 120
           NNAEYF TNYILI+LFILFLSLLWQPISLVVFIISF+AWLYLYFLHDEPWVVRGS+VDD+
Sbjct: 61  NNAEYFWTNYILIVLFILFLSLLWQPISLVVFIISFLAWLYLYFLHDEPWVVRGSIVDDQ 120

Query: 121 LVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEEGLSECGGG 180
           LVMVVLMLIT+ALLLITDAT NIIISMFVGV+VVFVHGALKGSED FSLDEEGLSE GGG
Sbjct: 121 LVMVVLMLITIALLLITDATMNIIISMFVGVLVVFVHGALKGSEDAFSLDEEGLSEYGGG 180

Query: 181 RGVIKMPLKHAASSSFSLS 200
           RGV+KMPLKHAASSSFSLS
Sbjct: 181 RGVVKMPLKHAASSSFSLS 199

[Close]

BLAST of Lsi06G002710 vs. NCBI nr
Match: XP_022973348.1 (PRA1 family protein F2-like isoform X1 [Cucurbita maxima] >XP_022973351.1 PRA1 family protein F2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 308.1 bits (788), Expect = 5.4e-80
Identity = 165/199 (82.91%), Postives = 178/199 (89.45%), Query Frame = 0


Query: 1   MGTYGTIPTEPVLSPNLHYTSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINRIK 60
           M TYGTIPTEPV   NLH TSRARERIAS LGT+RPWMEMIQ QD++ P+S  QLINRIK
Sbjct: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60

Query: 61  NNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVDDR 120
           NNAE+F TNYILIILFILFLSLLWQPIS +VFIIS +AWLYLYFLHDEP+V+RG  VDDR
Sbjct: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRTVDDR 120

Query: 121 LVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEEGLSECGGG 180
           LVMVVL LITVALL  T ATKNIIISM +GV+VVFVHGALKGSED+FSLDEEGLSEC GG
Sbjct: 121 LVMVVLTLITVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGG 180

Query: 181 RGVIKMPLKHAASSSFSLS 200
           RGVIKMPLKHAAS+SFSLS
Sbjct: 181 RGVIKMPLKHAASASFSLS 199

[Close]

BLAST of Lsi06G002710 vs. NCBI nr
Match: XP_023530325.1 (PRA1 family protein F2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.1 bits (788), Expect = 5.4e-80
Identity = 165/199 (82.91%), Postives = 178/199 (89.45%), Query Frame = 0


Query: 1   MGTYGTIPTEPVLSPNLHYTSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINRIK 60
           M TYGTIPTEPV   NLH TSRARERIAS LGT+RPWMEMIQ QD++ P+S  QLINRIK
Sbjct: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60

Query: 61  NNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVDDR 120
           NNAE+F TNYILIILFILFLSLLWQPIS +VFIIS +AWLYLYFLHDEP+V+RG  VDDR
Sbjct: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDR 120

Query: 121 LVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEEGLSECGGG 180
           LVMVVL LITVALL  T ATKNIIISM +GV+VVFVHGALKGSED+FSLDEEGLSEC GG
Sbjct: 121 LVMVVLTLITVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGG 180

Query: 181 RGVIKMPLKHAASSSFSLS 200
           RGVIKMPLKHAAS+SFSLS
Sbjct: 181 RGVIKMPLKHAASASFSLS 199

[Close]

BLAST of Lsi06G002710 vs. TAIR 10
Match: AT1G55190.1 (PRA1 (Prenylated rab acceptor) family protein )

HSP 1 Score: 151.4 bits (381), Expect = 7.8e-37
Identity = 87/174 (50.00%), Postives = 115/174 (66.09%), Query Frame = 0


Query: 1   MGTYGTIPTEPVLSP--NLHYTSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINR 60
           M  YG IPT    SP  +L Y SRA+ RI SGL TRRPW  M   + M+ P  F   I+R
Sbjct: 1   MTNYGAIPTSSHPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISR 60

Query: 61  IKNNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVD 120
           IK N  YFR NY + +LFILFLSLL+ P SL+V  I  V W++LYFL DEP VV G  +D
Sbjct: 61  IKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQID 120

Query: 121 DRLVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEE 173
           DR V++ L ++TV +LL+T AT NI+ S+    ++V +H A++ S+++F LDEE
Sbjct: 121 DRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLF-LDEE 173

[Close]

BLAST of Lsi06G002710 vs. TAIR 10
Match: AT3G13720.1 (PRA1 (Prenylated rab acceptor) family protein )

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-32
Identity = 75/181 (41.44%), Postives = 109/181 (60.22%), Query Frame = 0


Query: 1   MGTYGTIPTEPVLSP--NLHYTSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINR 60
           M  YG IPT    SP  ++   SRA+ RI +GL TRR W  M     M  P        R
Sbjct: 1   MTNYGAIPTSSHASPLVDVESLSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTR 60

Query: 61  IKNNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVD 120
           IK N  YFR NY +++L ++F SL+W P SL+VF +  V W++LYFL DEP  +    +D
Sbjct: 61  IKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQID 120

Query: 121 DRLVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEEGLSECG 180
           DR V++VL ++TV LLL+T+AT NI+ ++  G ++V +H  ++ +ED+F  +E   +E  
Sbjct: 121 DRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEAATTETS 180

[Close]

BLAST of Lsi06G002710 vs. TAIR 10
Match: AT1G17700.1 (prenylated RAB acceptor 1.F1 )

HSP 1 Score: 132.5 bits (332), Expect = 3.8e-31
Identity = 72/174 (41.38%), Postives = 109/174 (62.64%), Query Frame = 0


Query: 1   MGTYGT-IPTEPVLSPNLHYTSRA-RERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINR 60
           M TYGT   +   L+P L Y +R   +   SGL TRRPW +M+     + P     +I R
Sbjct: 1   MTTYGTNQKSSNDLAPKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATVITR 60

Query: 61  IKNNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVD 120
           I+ N  YF+TNY +++LF +FLSL+W P SL+V +    AWL+LYFL DEP  V    +D
Sbjct: 61  IRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLRDEPLTVFDREID 120

Query: 121 DRLVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEE 173
            R+V++++ +IT+++L +TDA  NI +++  G + V  H A++ +ED+F  DEE
Sbjct: 121 HRIVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEE 174

[Close]

BLAST of Lsi06G002710 vs. TAIR 10
Match: AT3G13710.1 (prenylated RAB acceptor 1.F4 )

HSP 1 Score: 121.3 bits (303), Expect = 8.7e-28
Identity = 69/181 (38.12%), Postives = 105/181 (58.01%), Query Frame = 0


Query: 1   MGTYGTIPTEPVLSPNLHY--TSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINR 60
           M     I T    SP +++   SRA++RI  GL TRR W  M        P     + +R
Sbjct: 1   MANNDEITTSSHASPAVNHESISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSR 60

Query: 61  IKNNAEYFRTNYILIILFILFLSLLWQPISLVVFIISFVAWLYLYFLHDEPWVVRGSVVD 120
           IK N  YFR+NY ++IL ++F SL+W P SL+VF      W++LYFL D P  V    +D
Sbjct: 61  IKTNLAYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQID 120

Query: 121 DRLVMVVLMLITVALLLITDATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEEGLSECG 180
           DR V++ L +IT+ LLL+T+AT NI+ ++  G ++V +H  ++ ++D+F  +E   +E  
Sbjct: 121 DRAVLIGLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEEAATTETS 180

[Close]

BLAST of Lsi06G002710 vs. TAIR 10
Match: AT1G08770.1 (prenylated RAB acceptor 1.E )

HSP 1 Score: 116.3 bits (290), Expect = 2.8e-26
Identity = 64/168 (38.10%), Postives = 108/168 (64.29%), Query Frame = 0


Query: 20  TSRARERIASGLGTRRPWMEMIQPQDMSCPSSFLQLINRIKNNAEYFRTNYILIILFILF 79
           ++RA++   S + T RPW E++    +S P  + + +  +K+N  YFR NY L +L I+F
Sbjct: 33  SARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVF 92

Query: 80  LSLLWQPISLVVFIISFVAWLYLYFLHD--EPWVVRGSVVDDRLVMVVLMLITVALLLIT 139
           L L++ P+S++ FI+ F+ W+ LYF  D  +  V+ G  VDD++V+V+L L+TV  L+ T
Sbjct: 93  LGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYT 152

Query: 140 DATKNIIISMFVGVMVVFVHGALKGSEDVFSLDEE-----GLSECGGG 181
           D  +N+++S+ +G+++V  HGA + ++D+F LDEE     GL   G G
Sbjct: 153 DVGENVLVSLIIGLLIVGAHGAFRNTDDLF-LDEESARRGGLVSAGSG 199

The following BLAST results are available for this feature:

BLAST of Lsi06G002710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C889	1.1e-35	50.00	PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1	[more]
Q9LIC6	1.6e-31	41.44	PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1	[more]
Q9FZ63	5.3e-30	41.38	PRA1 family protein F1 OS=Arabidopsis thaliana OX=3702 GN=PRA1F1 PE=1 SV=1	[more]
Q9LIC7	1.2e-26	38.12	PRA1 family protein F4 OS=Arabidopsis thaliana OX=3702 GN=PRA1F4 PE=2 SV=1	[more]
Q9FRR1	3.9e-25	38.10	PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1	[more]

BLAST of Lsi06G002710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFT6	1.5e-91	90.95	PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G0...	[more]
A0A1S3BR77	1.5e-91	90.95	PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103492315 PE=3 SV=1	[more]
A0A0A0LWF7	5.6e-91	90.45	PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_1G587410 PE=3 SV=1	[more]
A0A6J1I8E9	2.6e-80	82.91	PRA1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111471903 PE=3 SV=1	[more]
A0A6J1EDQ8	7.6e-80	81.91	PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111433234 PE=3 SV=1	[more]

BLAST of Lsi06G002710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878274.1	1.8e-91	91.96	PRA1 family protein F2 [Benincasa hispida]	[more]
XP_008450846.1	3.0e-91	90.95	PREDICTED: PRA1 family protein C [Cucumis melo] >TYK10102.1 PRA1 family protein ...	[more]
XP_004135817.1	1.2e-90	90.45	PRA1 family protein F2 [Cucumis sativus]	[more]
XP_022973348.1	5.4e-80	82.91	PRA1 family protein F2-like isoform X1 [Cucurbita maxima] >XP_022973351.1 PRA1 f...	[more]
XP_023530325.1	5.4e-80	82.91	PRA1 family protein F2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi06G002710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55190.1	7.8e-37	50.00	PRA1 (Prenylated rab acceptor) family protein	[more]
AT3G13720.1	1.2e-32	41.44	PRA1 (Prenylated rab acceptor) family protein	[more]
AT1G17700.1	3.8e-31	41.38	prenylated RAB acceptor 1.F1	[more]
AT3G13710.1	8.7e-28	38.12	prenylated RAB acceptor 1.F4	[more]
AT1G08770.1	2.8e-26	38.10	prenylated RAB acceptor 1.E	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004895	Prenylated rab acceptor PRA1	PFAM	PF03208	PRA1	coord: 31..169 e-value: 6.4E-41 score: 139.3
IPR004895	Prenylated rab acceptor PRA1	PANTHER	PTHR19317	PRENYLATED RAB ACCEPTOR 1-RELATED	coord: 1..198
None	No IPR available	PANTHER	PTHR19317:SF76	PRA1 FAMILY PROTEIN	coord: 1..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G002710.1	Lsi06G002710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane