Lsi06G002380 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G002380
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description40S ribosomal protein S30
Locationchr06: 2737060 .. 2750602 (+)
RNA-Seq ExpressionLsi06G002380
SyntenyLsi06G002380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCTTGGTCAGCCAATTGCTCCAATTGAAGCTCGTGTAGATTGGGTTCTTGATTATATCAGAGAATAGAGCAAAGAGGAAGGTTCACCTTTGAATTTTCCATCGCTGAGGCAGGAAGAGAGAAATTATGCAGCTGTGGGAAGAGATCGGTGGTCTCCTCCAGCTGTTAGAAGTTTTAAACTAAATATTGATGCTGCTTGTTGTCCGACGTCGAACAAAGTGGGGTTAGGGGCGATCATCTGCGACTCATCTGGGGTGGTGGTGGTTGTTTCATCTCATTTCCTCCCTTATCGGTTGGAGTCCTTTGCGGCAGAGGCTTTGGCCCTTCTTCATGGATTGAAGCTGGTTCGACAATTAGAGTTGGTGAATGTTCATGTTGAAGCTGATGCTAAAGCGCTTGTCAAAGTCATTTATGAGAATAGTATGAAATGCTCTCCTCATGGTGCAATTTTAAATGAAATTAGGTGTTTGTTGTCTTTGGATTGACTATTATCTGAAGTACATTTCTAGATCTATTAACTATGTGGCCCATAATTTAGTTGCTTAGGCATGGTCTCGTGAGTCTTGTGAGGTGTGGGTTGAAAGCCCACCTCTTTGGTTGTTGTCATCTGTATCTATGGATGTTTTTCTGTGTAACCCAATCTTTGGGTCTAATGCTTAATGGATTGTTTTTTTATGTTAAAAAAAAAAAAAAAGCCAGTGTTACTATGAATATTGATGTATTCTAATAATTTCTAGAGCATATTTTATTTTTTTTATTAGATTTTAAGTTTGAACACTAACACCCATAACTATTTAGTTTTTGAAAATTAAGTCTATAAATACTCATTCCATCTCTAGATTAGTATTTTTTGTTATATATTTTCTATCCATATTTTACAAAATCAAGCCTAATTTTGAAAACTAAAGAAAAAAAAAAAAAAGCCAGTGTTACTATGAATATTGATGTATTCTAATAATTTCTAGAGCATATTTTATTTTTTTTATTAGATTTTAAGTTTGAACACTAACACCCATAACTATTTAGTTTTTGAAAATTAAGTCTATAAATACTCATTCCATCTCTAGATTAGTATTTTTTGTTATATATTTTCTATCCATATTTTACAAAATCAAGCCTAATTTTGAAAACTAAAGAAAAAAAAAAAAAAGCCAGTGTTACTATGAATATTGATGTATTCTAATAATTTCTAGAGCATATTTTATTTTTTTTATTAGATTTTAAGTTTGAACACTAACACCCATAACTATTTAGTTTTTGAAAATTAAGTCTATAAATACTCATTCCATCTCTAGATTAGTATTTTTTGTTATATATTTTCTATCCATATTTTACAAAATCAAGCCTAATTTTGAAAACTAAAGAAAAAAAAAAAAAAGTAATTTGTAAAAACTTGTTTTTGTTTTTAGAATTTGGTTAAGAATTTAACTATTTTACTTAGTAAACAATGAAAACCATAGTAAGAAATTGAGAAGAAATAAATACAATTTTTAAGTATAAAAAATCAAAAATCAAATTTTCGTTGTATCAATGTGTTCTTAAAATTTTGGAAGCGTGACTAGTTTTAAAACTTAAAACTTGGTATTTAATAGATTTTTTTAACTTTTTATTTTGTATCAACACATGAGACATTGATCTTTGAAAACTATTGTTTATGACTTATTACTTATTAGATACGATACTCAAAATTTAAATTCTAAATTCTAAGTAGGGAAACTTACAGATACTTATCGTTTGGGAAATAAAAATGTTTTTATATCTTACATTTTCTTAAAAAATACATTTTAAATAACAACTTTGTTTAGTTAAACATCGTTGAAAATGACATAATCAAAAAGGGGGAGAGAAGAAGATGAAGGAAGGAGGGAGGAGAGAAAATGGGAAAAGAGAGAATATATAATTTTTTTATAATTATTTTTCTAATTTAAAAGGTTATATAATTATTTAAATAATAAAAAATATTTAGTAAAAGCTTGTCCTTAAAAATAGAGAGTAAAAAGGTGTGACTTTTCATTTTGGTCTAATATAATTTTAAAATTTTTATTTTGTTTTCTTTTTAGTTTTAAAAGCAACCATTTTGATCGATTTACTTTTATTTTTAAGAGATGAAAATGATGAATTTTTTAAAGTTCAAGAATCAAAACGAATATTTTGAAAGTATAGGGACCAATATGAACAAAAATTTAAAATATAGGGAGTAAGAACATGTTTAAAAGTAATTTTAAAATCATTAAAATCACTTTTGTCATTTTTAAAATCACTCAAAAACACACTTATAATCACTCAAAATTAATTTAATTTTCAATTTTACACTTTTAAATACAATTTTCAATCATCAAGATTAGTTTTGAATGATTAAAACATATTTCACGATGGTTTTAAAAATGACAAAAGTGATTTTAGCCATTTTAAAATCGCTCTCAAACATGTCTTAAAGTAGTATTTAAACCTAAGATTTATGAACCAAACACGCCTATTTTTTAAAAATGGAAGTTTTTTTTTTCTTTTCTTTTTCATTCAACACAACATTTGAAGATGAATATTCAAACCTCTAATTAATTGGTCGAGAGAAAATTAAATTATATTGAAAGTTGTGATAGGAGATTAATAACTAAAAGTTAGGCACATATTGTCTATTTAATTTACAAGTCCACGTCAGCGATCTACGTGGAACAACAAACATTTTATATGCGAATTGCGATTGACATTACACTTTGCAATTAATTGCATATCACGTTTCAATGCATTAAAATACATTGTTTTGTTTAATCAACTTTCTACTGTTACTTGATATAACTTTTTTTCGACTTAAAGTTGATTGAAATTAAACACTTTTGAAATGATAATTACTACTTATCCATCAAAATTTATTTAAATTATCACTTAAATTAGGATTATTTTTAAATATAGAAAAATGAGTCAAACTATTTACAAATATAGAAAAATTTTACTATCTATCAGCGATAGACCACGATAGAATTTTATCACTTGAGCGTTAGACACTATCGCTCAAACAATAACATTCTATCGCTTGTTTATTTTTAGTGGTATCAATCGGTTTTAAAATTTAAACTTGGTATTTAATAGATTTTTCTAACTTTTTATTTTGTATTAACACAAACTTTATTGATGACTTGATAGACGCAATACTCAAAATTCAAATTTTAAGTATCGAACCTTACAAATATTTATTGCTTCGGAAATAAAGTTTTTAGCTATGATAGGTAACATCACATTCCATTTGAATAAAAATGGAGAAAAATTAAAACATGTAAATGAGAAAATGATTGATATTTATATTTAGGATTGGTTTGAAATACTTTAAATTTTAAACACTTCTAAAATATATATATTTTCAACCAAAAAAAAGTTTATATATCTTACCATTTTTAAATAACAAATATGTTTTAGTCGAACCAAGCTTAAAAATGTCGATGTTGACAAAAATATCGAAGTCTAAATTTTAAGAAATTTCGATAGAAATATCGATAAAATGTCGTTTTCGATGAATATTTCAAAAAAAAAAATTATAAGAACAAAAAATTTTAAAAAATAAATTTAAATTAGTAAATAAAATATTTTATGATTCTTAAATTAGTTAGCATGTATGTTATTTATATTATATTTACATTAGTGACATTTTATTGCTTATTTTTTATGTTTCGTAGATTTTTTTATGATATAATGGAAATATCAATTTATCCCTCATGATGATGTCAAACCCATGAAAACGTGAAAACATTGACGAAAACATCGACATGTCGAACAAAAATTTAATACTATGAGTTGAACAATGTTCTAAGATGGGGAAAAGAAAGAAGGACAGAAAAGGAAGGTGGGGAGAAAAGAGAGAATAGATAATTTTTACCATTATTTTTTTAATTTAAAATAATAAAAAAATATTTCAATAACTTTTTAAACTTATTCTAAAAACCTTGATAACTTAAAAAATTTATTTAAACTGGTCCGAACACTCACGGATATAAATAAAAATAAAAAAAAAACCTTGATAACTTAAAAATTTTATTTTAAAAAATTTACACATTATTTTTTCTTCTTCTTTTAAGTTCATTACAATATTTGAAGATAGAGATATTTAAACCTCTACCTTCATCGATCCAAGAAAAAATCTACTTTAATCCCTTGAATTTGATTGAGATTCTCTATAGAGATTGATAACGAAAATTTAGGCACATTTATAGTACATGTGCCTATTTAATTTACAACTCCAACTCCAAGTCAGCATCTACACATTGCAATTAATTGCATATCACATTTCCATACATTAAATACATGGATAATCAACTTTTTACTATTTTTCCATTTATTTATTTTTTAATTATCGTAGGATTGAAATTAAAGCATGACTTATAGAAGGGTAATTAATGCTTTATTTACTAAACTATATGGTTAAGTTTAAATTAAATTTACAATGAACGCAAAAAATCCTATACATAGGAATACAGGGAGTAGAGAAACTCCTTATAAAGAACAATACAAATTTAAATTTGGGCTCAATTGGACTACTAAAAAATCTATTGATTGATAAATTTAATAGTATTGTACTAAAAAAATTTCATTATATATATATATTTTTGGAGGTATATACAAGTTCAAATATAGAAAAATATTTCGCCCACCGTGGGGCTCGAACCCACGACCACAAGGTTAAGAGCCTTGCGCTCTACCAACTGAGCTAGACGGGCAAGTTTATGCTACTTAGTATATTTGAAAATAATAAAGTATAATGTTTAAAAATACAAATGATTTTAGTTTGATTTAGTTTTTGGAATCATTCTATTTAGTGTAATTAAATGGAACTTTGGTTTATTGTTTCTAAAAATTTATATTTATATTTGAGGTTTATGATTTTTGACAATAATTGTCATAGACTCCTTTGAAAAAGCAACTACAACAACGAGCATAGAGAGATTGAAAGTGCAAACACCAAGAGACAAGTTTGAAGACATGACCTAAACTAGATAAATAATCTTTAATTCTATAAAAAGGGGTGTGATAGTGTTTAGTACATGCTCTTTAGAAAACCAAATTTCCAATATACATTGAAAGATTGGATTATTTTATTTAATGAAATATAAAAGAAAAATTAGTTTTTGCATCTAATAGTATTGATTATGATTTCCATTTCTTTTTGTATTATTCCTCAAATTATGAAAGAAGATTATTTCCTTGATTATGATTCTTGTCGTAACAACATTGAGATTTCAATATATATGTTGAATATATTGATAATAGACTGAAAAGTGTAAATATACATCACATATTCTATGATTTATTTTTTAGTGTGTTTACAAATATACTGGAAAATGTAAATATATAGATTGTAGATATTGTTCGATATATAAGACAATATATTGTACAAATTTTATTGTCATGCACTCATCAAATATTTCTTAGTTTATTTCTAGAAAATTCAAGTATATATCGAATATATGGTGTTGTATATATCAAATATACAATATTTCTATTTTGAAGTTGCTCTCCAATTTTGGCTTTCGTTTACGAGGATAACAAATTTTCGATTTTTTAGAAAAACTTTTTTTACTTGTAAAGGTTTTGAAAAAAAGACCATTTTAGAAAGTTCATAATTGCGAGAAACTTATCTTACACGTGTCTTTTGGTATTATTATATATTTAAAAAATTAAAGAGTAAATAAAAAGTAATTTTTTTGTTAAAATAATAGATCACTAGGTTCTTCAAGTAAAAAAAATAAAAAAGTTTGGATAATTATGTAATTAACCATATTAATTTAGGCTAGAAAGATTATCTAGACTTAAACAATGAGACATTGGCCAGCAACACATGAATGTAAAATCTCCTTTTGCTTGTATCTTTCTCCTTAAATCTTCATTGAGGTCCAATGAATTTGGGCATTAAACAAATGTCAAAGCATTTAATTAAAACTAATTTCAAATTAAAATAATATGGAAAATAAAATAGAGTTGAGCATGCGCAATCAATAATGATTAAATAAATAAATAATGTATAAAAAATAATAATACATTTAGTTATTGGAAAACTTTTAAAAATAGAAAAATAAGAAAAATTATTTACTCGAAATAACAAAATTTTTAAATAGTTGTGACAGACGCTGATAGAAGTCTATCAAGATCTATCAGTGATAGAAATGATAGAAGTTTGTCACTGATATATGCTAATAAAAGTCTATCAATTTTTATTAATGTTTTTCTGTAAATAGTTTGACATTTTTTTTACTCGTGAAAATTTTCTTCATTAATAAAACATTTATATATCTAAGAAAAACAATAAAAAATTTATTAACTAAAGCAACTTAAAGTTTTTGAAACTTTATAAATAAGGCTTGAACCAGTTTATTTCAATATATAAAATTTAAAAAAACAAAACAAAACAACACATTTGAGAAAATTTATTGTAGACATATATGCGCTCCAAAAAAATAAGAGTAAACGTGTAATTTTTTTAAATTTGTTTTCATAAAAAGAATTTAGTAAAAATATTCATTTATACCTCTAAATTTGAACGGTTGTATCAATTTAAACTTTGGATAATTGTATCAATTTAGACTTTGAACTTTTGTAAATGTATAAATTTACAACCTCTATCATATTTCGTTTGGAAAAACCTTGTGTGGAACTATTTTCTTTGATAATCGTCTATGTGTTTACTCTAATTGTCTATTTTGTAAAACCAAAATTTGAAGAAGCCTACGCGCATTTTAGAATTAATGCATGGATAATTTTCAAAGGTAATAGTAATAAATAGTCTGGATTGATTGACTTATGAAAAATTTAGAGTTTAATTGACTCAAATTATAAGTTTTATACAATATTGGTTGAACGAAATCTACAAGAGCGAGTAAATTAATATACTTATGAAAGTTTAGAGTTTAAGTTAATATAATGATTTTGTATGGGCCATCAAATTAATCCCAACCCAAATTTCCAAACCTGATGGCGAAAGGCAGCTCATTACCATTTGTAAGGCCCAATTTAGTCGGCCCAAACTCTACAATGTATTGGACCAATGGTCTCTCAGCTAGCCCTATTCTAATTGTTTATATAATCTCATGCAACCAAAGCCCTAACTCTTGATTTCCATCTCCTCAGCGGCTTGTCATCGGAAGTTAAGCACCAGGAAAGTACCGAAGCAATCAATCTGCCATGGGTGAGCAAAACCCTAACTCTTGATTTCCGGACCTCCGATGTTCTGAAGTGCATTGAGTTTCTTTTCCTTTGTTTATTGGTTTTTTCATCTGTATGAAACTGTTTGTTAATTGTGTGTATTCGTGTTTTGATCGATTTTCAGGGAAAGTACACGGATCTCTGGCTCGTGCCGGCAAGGTTAGAGGTCAAACTCCGAAAGTAGCGAAGCAGGACAAGAAGAAGAAGCCCCGTGGACGTGCACACAAGCGGATGCAATACAATCGCAGATTCGTTACCGCAGGTAACATATTGTTGTTAACTTCATTTGTTTTTCCGATGTATTGCCGGTTTAGAATTGCTGATTTTGGTTAAACATTGTATCCAATCATTATTTTACGGCTTATGGTAATTGGTTAATTTGTTAGATTACATGTAGCTCTGTATCAGAATCAATATTTTTATTGCATTAGTAAAATTTTTGTATCAGGATTCGATAAGCATCATTCTAATGTGTAATTGAAATGTGTTTGATCTTTACAGTGGTTGGTTTTGGAAAGAAGAGAGGACCCAACTCCTCTGAGAAGTAAGCAAATAGCGAACTCATGGGGGGAGCTTTGCCGCTGGAGAGGCATGGTTTTGTGCGTTATTATTAAGCTTTTTCTTCCTATTTCTCATAGATGTTTTAGTTTATTGAGGCTCTTGACCGTGTAAAAGATATTTATTTTGACAATATATTAGAAGTAATGTGATTTCGCTCTGAATTTTTGTTAATCAAATGGTTCCATTCTGAATTTTCATATTTTGTCTTGCTGTTTTGAAGCTTTATGTCGTTGCATGCCTAGAGTTCTCGTAATTACGATATTCGTGCACATATGAGTTGGTGCTTCTGCCTTTTGTGGTAAATTTGCAACAACTATGTGGAGGCAGTTCTTAATGATTTGGGTGCTGAAATAAATTAAGGTTTCTGGTCAAAATAATATGAGCTTCCCCAAAATCTGTATGAGTTTTCTCATAAGGCCTGGGGGTAGAGGAAACCTCCACCCAGAGAAACTAATGGAGGGTGGTTGTCCAATTGTTTATGATATTAGGTTTCATTTAAAAATTACACTTTCTGTAAAATCGTAACCACAAGTCCTGGATTTGCCAGTTTGAAAGTCTAGGTTTTTGTAGCTTTATGTGTTTCATTCTGAAGATGCTCTTTCCATCAATGCAAGTTCTAGGCGTCGATCGGGTATCAACACAGAAAATGCTGGAAAGGATCTTTGCTTTTTAGGGCGTTGCAGGTAAGAAATGAAGGGCTTTTTAAGCTTCAAACTTTTACAGCTGCACTGATTCCAAATTCTGGCTTGTGTTAAATTACTAATACACCTTAAATTCAAGATGTTAGGGATAACTTTTGTAAAACTGAGACTAGCTTAGCTAGCACGGATTAGGATCAAACTTCTTTAGAAAAGGTGAGGAGGTAAAGTTGTAGTTTTAAGTAAATGTGGTTCAGTATTTCCCTGAAAAATGACCCATCATGTGCCATCAGTTTTGCACTGCTTAGAAATTTCAACACCTTTTAGCTTTTACAGTTTAACTTGTAAGATTTTGCATCATTTTAGAGCTTCTCATATTCATGCAACAATGAGTTTTAGCGATGCTTACTTCAATCAACTCAGTAGATGGTTTATACTATCAATCATGTAAAAAATTATTTTGCTGAAGGCTAAAATTAGAAACTAGGCAACTTATTCATAGAAAATTAAAATGGGTTAAAAAAGATGTCGGTAGCCTGTTAGTAGAAAATCGTTGTTCTAACCTTATAATATTTGCTTGAAAGAGGAAGTTTCTTTTGGTTCCCTGTTATAGCTTTGCTAAAAAATATGTGGTTCTCTCACTTCAAAGTTTCTTAAATTGCTTGAAGAGCAGTTAATGTGCTTTCTTTTGTTGTTTGGCTATACCACATTCACTTGATTGAAGAAACCATTAGCGATAGATCTATAGGCCTCACAAAAAAAAAAAAAAAAGATCCTGATCTTTTCGTACTCAACATCGAACTGGTTTTGTGCGTGACCATTATTTATTGGGTCTGAGGTGCTTGTGGTTACAAAATGCCCCTTTGACTCTAGAAAAAAGCTTTTATCATCATCACTAGCGTTGCGTTCCTTCTTTAGATTCTTTGTGCCAGAGCTGTTTATAAGCCCTCATGTAGGTAACCCCGAAAGAGAGGAGATTTTTTAGTACAGGAAACCTCTCAAACATACATACTCAAACAACCTAAAAATTTGTATTTTGGCAACCTGCATGACTAGGTGCTAAATATATCATTTCAAGCGTTGTCAAATTGATAAGCATTAAAACATAACAAAAATACAACGTTTTTCATATATGCTTCAGTCACACACTGTCAACATTGCAAAAGGGTTTTCTAAAATTACATCTGAAAGATTTAACACATTTCCAGATGTAACTTGACACATAATAAATTAGGTTGAGATGATTGTCACATCAAAGGAATGGCTTCAAATAGAGCCAATACTTGAATTACACTATACAATGATAATAGATTTTAAATGTATTGAAATAAATTATGACAAAATTACAATATAAATCAAGTGTTTCAAGGTACTTCGACCCTCCCCTCTTAGATCTCTCTCAAGTTCTAATCTACTCACCAAAACAAAACATAATTCTCTTTTCCGCTCCCTATTTATAATGTAATACCATAACTAATTTATTAGCTAATTACTAACATATCCTTACAATGTTCTAATAACATTTTTATCATACAACTACAAACATTTAAAGCTCATCATGAGAGTGTCCTTTAGTAATAGTAGATTTGGGTGAGTACTCTAGAAGGTACCTTGTGGCAATTGATGCATGCAATGCTGCACCATAAGGAAGAACATCTTCATTTACTATATAATAAGGTGAATGTCCTTGTTCGAACTTTCCTACACTTTCATTTTTCATCCCAACAAAGTAGAATAGTCCTGGAATCACTTCACCATAGAATCCAAAGTCTTCTGTTCCCATCAGTGGTTGCATATCAAGAATGTTCTTAGTACCCAACATGTCCCTAGCGACGGTTCGAAAATGCTTGTAAAGATTTTGGTCATTTGATGTAATTGGAAAAAAAGGGTTTTGATCTTCATTGAACTCAACAGTGGCATTGCACCTCTGAACGTTAGCTTGTTTTGTGATAACCTGTCATTGTTTTTCCAAGAAGAAAGAAGCATTATAGAAATGAATTTTGACTTAAGGGAGCATATTTCTAGGAATCTACCTCTACAATTCTCTGTTTAAGTTGGATGAAGCTTTCTTTTGAAAATGCCCTGAAAGTGCCTCCAATGGTAACAGAATCTGGTATAACATTGAATGCACCACCGCCTTGAAACTTGGCTATCGTAACCACCTGAAAGATTCAAATATGTTTGTAAAATGCTAGGTACTGCTCCTTTCTCATAATTATATAGACAAGAGTATTTAAACATCATCTTAACTAAAATAGAAAAGTAAACAATCATAGTGGTTCTTTGCTAAATTCAAAACGATTTCAGCAAAGAACTTTATAAGAACTTTATAAGAACTTTGAGAGCTGTTAGATTGGTTAAATGTACTTTTTACTAGTCTAGAACTAGAAGACATATCAAACTCACTCTCAATCCAACCTCAGCAAACTCCTGCTCTTTAAGCCAAACAACTTTACTCTCCCAACTCTTACTTCTTGGGCCAAACATGTCCTTAGTGTGTTCTCAAACTTGAACATTCTAATAACAAAGAGGTCTAGAAGAAGAATCAGATACTCACGTGAAATTCCAGTATGAATTTCGAAAAACAAACTTAGATCTCTTATCCATGCAATAGAAGTTGAATTCCTAGAATCTCAAACTCAGATAAACAGTAAACCATACAACAAATTAAGGAATTATGCTTTGAAAAACACAACACTTGGGATTTTCCACTAGACACAACACTTACGTTGGCAGAGTATAAAGGAATCAACTATATTTTCCCACAATGTAAATGATGAGTTCTGAATAGTTGCAGTGACTATAAGCCTGATAAACCTTTAAAAAGAAACCATACCTGTGAATCCAAAGGATCGGCTTCGCGCGAGATAAGATGTTGCAAACTGACAATTATGTTGGAAGCTGCTAAAATTGGGTCAATTGTGTGTTGAGGTAGAGCAGCATGACCTCCCTTACCACCAATAACTGCCTCAAAGAAACCACTTGCAGCCAGAATAGGACCAGGCCTGGAGATCACCATACCAAAAGGATACCTGGCACTTACATGCAACCCAAAGATGGCATCAACATTATCCAGTACTCCAGCTTCTCTCATTTTCTTTGCTCCCCCACCTCCTTCCTCAGCTGGTTGAAAAACAAGAACCACTGTTCCCTGTTAAAATCAGGAGCCAAAACAGCAAAAATTTAGAATAGCAGTATGAACAAATATCTATGCCAGTCACAAGCATAAATCCTCTTATAATCTAATTATGTGAATGATAATGAAGGCTTCTGTACTCTATTTGCCCACCTTATACGAAGAGAAGGGTGTCTATGTCTTTATGCTTAATACAATTAGGGAAAGTAACTGAATGAGGTTGGATAATATTTGTCCTTACATCATTCTTTATCGTAGGAGAATCAAAACAGATCTGAGAGCAAAGGAATCAAGTCCTATAAGGGTCTATTCCCATGTCTTTGAATGCGCTAGGTCTCCTGTGGCGAGGTACATACGACAACTCCTCAGAGTATCCAAGTGATACAAACATAGACTAGACCAGAATTCCTAATTAATGTATATGCACAAAACGAGGTTAGAAAAATAAGATTTTTGCACTGATTTCACTTCATCGAGGCCTTAAAAATAAATAAAATAAAAAGAGAGTTAAAAGAGCAGAATCAGGTACTGTATTCTTGTCCTGGATTTAGAATAAATGACAACTTCCTTCAACGTTCCCATATAAACTGAGGATTTCCAATCCTGTTTGGGGTGAAACCTTGGTTACATGGGGGAAATGAGCATCCATGTATGCAGATGCGATTGACCATGCCTCTTAAGAATGCATCTGTGCAATTCCATTATGACTTATGTTTGATCAGAAATGCATATATAGTGTTAAGACCACATAATAGGTTATTGATTTTTCATTTAAAAGTCATATATCCAGTAAAATGAAGGTGGAAAATCCACAATCAATGGTATGAAAGTAAAAAGAAGTGTTCTGAATTTGTGACAGTTAAAAGGAAAACCCTTTGCCTCTAAGAACCAATCACAGATAACCAATCATTTAGTTGCCCTCACTCATTACTTGTGGATTAACAATAAGTAGAAAATGCCTCGACCAAAATGCATTCAATGACTTTTTTTTTTGGGTTTTTTGTGAGTGTTTGGGGCAACTTATGTGTACCTTGACTAATCTTACAGAACAACCTGCCTGATCCTACAACATTTAGATGTCAAGGGAACTTGTAGGATATTAAATACTAGGTGAACTTGGAAATGGGTTTTCTGATAGACCGACGTAGAAGTTTGGGCCTAAATGAAGTTTGACCGTTTTCTGAAAATAAGTTTTTCAAACCCTTTTGCTAGCATCGGTGAACCTTTTCTTCTCGCTTGCTCGCTCCCTCTTTTCCCTCTCGCTCTCTCTTTTATGTGTTAGTATGTTATTAACATTATTTACGATTTTAGCTCTAAGGTTTTGAGGAATATGCTATATAAACTCTCTAACTTTACTGGCACCTTGAATCTATATTATTTGATTTTCTCTCTAATAATAAAATTGATCACTCCCTCTACCTGTGGACGTAGCTAACACATTGTTAGTGAACCACACAAATCTCTGTGTTGTTTGCTCTACTGTTTATGTTTTCCGTGTTTCTTCGATTGTCTGTGACAATTCTAAAATCTCCTAGTTAAATTGTAAAAGAAATCTTGAAAATTTAATCTCCATATCTATATCCAACAGCCACAAGTTTAAAGTGGAAGAACAAGAACCTGTATTAGACGACGGTGCTGTTGAAGAATCTTTGCAGCTCCTAAAAGCATAGCAACATGAGCATCATGGCCACACGCATGCATCTTTCCAGGAACTTTGCTTTTGTGTTCCCATTCTACACCCTCCTACATTACAACCAACATTACACAAATAATTTCTCTCAATAAAGGGGCATTTATACAACAATGGATGAAATCCATTGAGAACAAATAGCCCTCATTCCTCAGTTTCAAAATCATCCATATAACTATTGGATTTCATAATCACATTCAAACAAAAGAAACAGAAAGAAAGACAGAGATTCAAAAAATTTAGGATATTAAGTGTACCTGCAGGGCTAGAGCATCCATGTCTGCTCGAATAGCAACGAAAGGAGGGTTTCCAGTTCCGATGAAACCAAC

mRNA sequence

ATGGTTCTTGGTCAGCCAATTGCTCCAATTGAAGCTCGTGTAGATTGGGAAGAGAGAAATTATGCAGCTGTGGGAAGAGATCGGTGGTCTCCTCCAGCTGTTAGAAGTTTTAAACTAAATATTGATGCTGCTTGTTGTCCGACGTCGAACAAAGTGGGGTTAGGGGCGATCATCTGCGACTCATCTGGGGTGGTGGTGGTTGTTTCATCTCATTTCCTCCCTTATCGGTTGGAGTCCTTTGCGGCAGAGGCTTTGGCCCTTCTTCATGGATTGAAGCTGGTTCGACAATTAGAGTTGGTGAATGTTCATGTTGAAGCTGATGCTAAAGCGCTTGTCAAAGTCATTTATGAGAATAGTATGAAATGCTCTCCTCATGGTGCAATTTTAAATGAAATTAGCGGCTTGTCATCGGAAGTTAAGCACCAGGAAAGTACCGAAGCAATCAATCTGCCATGGGTGAGCAAAACCCTAACTCTTGATTTCCGGACCTCCGATGTTCTGAAGTGCATTGAGTTTCTTTTCCTTTGGAAAGTACACGGATCTCTGGCTCGTGCCGGCAAGGTTAGAGGTCAAACTCCGAAAGTAGCGAAGCAGGACAAGAAGAAGAAGCCCCGTGGACGTGCACACAAGCGGATGCAATACAATCGCAGATTCGTTACCGCAGTGGTTGGTTTTGGAAAGAAGAGAGGACCCAACTCCTCTGAGAAGTAAGCAAATAGCGAACTCATGGGGGGAGCTTTGCCGCTGGAGAGGCATGGTTTTTTCTAGGCGTCGATCGGGTATCAACACAGAAAATGCTGGAAAGGATCTTTGCTTTTTAGGGCGTTGCAGCCACAAGTTTAAAGTGGAAGAACAAGAACCTGTATTAGACGACGGTGCTGTTGAAGAATCTTTGCAGCTCCTAAAAGCATAGCAACATGAGCATCATGGCCACACGCATGCATCTTTCCAGGAACTTTGCTTTTGTGTTCCCATTCTACACCCTCCTACATTACAACCAACATTACACAAATAATTTCTCTCAATAAAGGGGCATTTATACAACAATGGATGAAATCCATTGAGAACAAATAGCCCTCATTCCTCAGTTTCAAAATCATCCATATAACTATTGGATTTCATAATCACATTCAAACAAAAGAAACAGAAAGAAAGACAGAGATTCAAAAAATTTAGGATATTAAGTGTACCTGCAGGGCTAGAGCATCCATGTCTGCTCGAATAGCAACGAAAGGAGGGTTTCCAGTTCCGATGAAACCAAC

Coding sequence (CDS)

ATGGTTCTTGGTCAGCCAATTGCTCCAATTGAAGCTCGTGTAGATTGGGAAGAGAGAAATTATGCAGCTGTGGGAAGAGATCGGTGGTCTCCTCCAGCTGTTAGAAGTTTTAAACTAAATATTGATGCTGCTTGTTGTCCGACGTCGAACAAAGTGGGGTTAGGGGCGATCATCTGCGACTCATCTGGGGTGGTGGTGGTTGTTTCATCTCATTTCCTCCCTTATCGGTTGGAGTCCTTTGCGGCAGAGGCTTTGGCCCTTCTTCATGGATTGAAGCTGGTTCGACAATTAGAGTTGGTGAATGTTCATGTTGAAGCTGATGCTAAAGCGCTTGTCAAAGTCATTTATGAGAATAGTATGAAATGCTCTCCTCATGGTGCAATTTTAAATGAAATTAGCGGCTTGTCATCGGAAGTTAAGCACCAGGAAAGTACCGAAGCAATCAATCTGCCATGGGTGAGCAAAACCCTAACTCTTGATTTCCGGACCTCCGATGTTCTGAAGTGCATTGAGTTTCTTTTCCTTTGGAAAGTACACGGATCTCTGGCTCGTGCCGGCAAGGTTAGAGGTCAAACTCCGAAAGTAGCGAAGCAGGACAAGAAGAAGAAGCCCCGTGGACGTGCACACAAGCGGATGCAATACAATCGCAGATTCGTTACCGCAGTGGTTGGTTTTGGAAAGAAGAGAGGACCCAACTCCTCTGAGAAGTAA

Protein sequence

MVLGQPIAPIEARVDWEERNYAAVGRDRWSPPAVRSFKLNIDAACCPTSNKVGLGAIICDSSGVVVVVSSHFLPYRLESFAAEALALLHGLKLVRQLELVNVHVEADAKALVKVIYENSMKCSPHGAILNEISGLSSEVKHQESTEAINLPWVSKTLTLDFRTSDVLKCIEFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Homology
[Close]
BLAST of Lsi06G002380 vs. ExPASy Swiss-Prot
Match: P49689 (40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3)

HSP 1 Score: 117.1 bits (292), Expect = 2.7e-25
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 177 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 236
           KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Sbjct: 3   KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSEK 62

[Close]
BLAST of Lsi06G002380 vs. ExPASy Swiss-Prot
Match: P62866 (40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.5e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 177 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 235
           KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]
BLAST of Lsi06G002380 vs. ExPASy Swiss-Prot
Match: P62860 (40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.5e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 177 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 235
           KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]
BLAST of Lsi06G002380 vs. ExPASy Swiss-Prot
Match: P62861 (40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.5e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 177 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 235
           KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]
BLAST of Lsi06G002380 vs. ExPASy Swiss-Prot
Match: P62862 (40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.5e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 177 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 235
           KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]
BLAST of Lsi06G002380 vs. ExPASy TrEMBL
Match: A0A6P4A6S7 (40S ribosomal protein S30 OS=Ziziphus jujuba OX=326968 GN=LOC107424007 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-24
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 171 EFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRG 230
           +F+ + KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRG
Sbjct: 71  QFIVMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRG 130

Query: 231 PNSSEK 237
           PNSSEK
Sbjct: 131 PNSSEK 136

[Close]
BLAST of Lsi06G002380 vs. ExPASy TrEMBL
Match: A0A151SKI7 (Protein transport protein sec16 OS=Cajanus cajan OX=3821 GN=KK1_001578 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.1e-24
Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 0 

Query: 157 LTLDFRTSDVLKCIEFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNR 216
           + + ++  + L  IE   L KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNR
Sbjct: 751 MKMGYKQEEALIAIE--RLGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNR 810

Query: 217 RFVTAVVGFGKKRGPNSSEK 237
           RFVTAVVGFGKKRGPNSSEK
Sbjct: 811 RFVTAVVGFGKKRGPNSSEK 828

[Close]
BLAST of Lsi06G002380 vs. ExPASy TrEMBL
Match: B9FRR9 (40S ribosomal protein S30 OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_20291 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.1e-24
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 0 

Query: 171 EFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRG 230
           + +F  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRG
Sbjct: 109 QLVFPGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRG 168

Query: 231 PNSSEK 237
           PNSSEK
Sbjct: 169 PNSSEK 174

[Close]
BLAST of Lsi06G002380 vs. ExPASy TrEMBL
Match: I1J9W0 (40S ribosomal protein S30 OS=Glycine max OX=3847 GN=GLYMA_01G209400 PE=3 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 5.3e-24
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 174 FLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNS 233
           F  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNS
Sbjct: 42  FAGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNS 101

Query: 234 SEK 237
           SEK
Sbjct: 102 SEK 104

[Close]
BLAST of Lsi06G002380 vs. ExPASy TrEMBL
Match: A0A151TJD2 (40S ribosomal protein S30 OS=Cajanus cajan OX=3821 GN=KK1_013488 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.3e-24
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 174 FLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNS 233
           F  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNS
Sbjct: 3   FAGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNS 62

Query: 234 SEK 237
           SEK
Sbjct: 63  SEK 65

[Close]
BLAST of Lsi06G002380 vs. NCBI nr
Match: XP_015889175.2 (uncharacterized protein LOC107424007 [Ziziphus jujuba])

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-24
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 171 EFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRG 230
           +F+ + KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRG
Sbjct: 71  QFIVMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRG 130

Query: 231 PNSSEK 237
           PNSSEK
Sbjct: 131 PNSSEK 136

[Close]
BLAST of Lsi06G002380 vs. NCBI nr
Match: CAF2137490.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 122.5 bits (306), Expect = 4.9e-24
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 0 

Query: 157 LTLDFRTSDVLKCIEFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNR 216
           L   F++ D+ +C+  L   KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NR
Sbjct: 49  LRFKFKSIDLCECL--LISGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNR 108

Query: 217 RFVTAVVGFGKKRGPNSSEK 237
           RFVTAVVGFGKKRGPNSSEK
Sbjct: 109 RFVTAVVGFGKKRGPNSSEK 126

[Close]
BLAST of Lsi06G002380 vs. NCBI nr
Match: KYP55364.1 (40S ribosomal protein S30 [Cajanus cajan])

HSP 1 Score: 122.1 bits (305), Expect = 6.5e-24
Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 0 

Query: 157 LTLDFRTSDVLKCIEFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNR 216
           + + ++  + L  IE   L KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNR
Sbjct: 751 MKMGYKQEEALIAIE--RLGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNR 810

Query: 217 RFVTAVVGFGKKRGPNSSEK 237
           RFVTAVVGFGKKRGPNSSEK
Sbjct: 811 RFVTAVVGFGKKRGPNSSEK 828

[Close]
BLAST of Lsi06G002380 vs. NCBI nr
Match: KHN42697.1 (Protein transport protein Sec16B [Glycine soja])

HSP 1 Score: 121.7 bits (304), Expect = 8.4e-24
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 168  KCIEFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGK 227
            K I  + + KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGK
Sbjct: 1421 KFIVAVIMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGK 1480

Query: 228  KRGPNSSEK 237
            KRGPNSSEK
Sbjct: 1481 KRGPNSSEK 1489

[Close]
BLAST of Lsi06G002380 vs. NCBI nr
Match: EEE65180.1 (hypothetical protein OsJ_20291 [Oryza sativa Japonica Group])

HSP 1 Score: 121.7 bits (304), Expect = 8.4e-24
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 0 

Query: 171 EFLFLWKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRG 230
           + +F  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRG
Sbjct: 109 QLVFPGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRG 168

Query: 231 PNSSEK 237
           PNSSEK
Sbjct: 169 PNSSEK 174

[Close]
BLAST of Lsi06G002380 vs. TAIR 10
Match: AT2G19750.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-26
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 177 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 236
           KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Sbjct: 3   KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSEK 62

[Close]
BLAST of Lsi06G002380 vs. TAIR 10
Match: AT4G29390.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-26
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 177 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 236
           KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Sbjct: 3   KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSEK 62

[Close]
BLAST of Lsi06G002380 vs. TAIR 10
Match: AT5G56670.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-26
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 177 KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 236
           KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Sbjct: 3   KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSEK 62

The following BLAST results are available for this feature:
BLAST of Lsi06G002380 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P496892.7e-2596.6740S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3[more]
P628665.5e-1879.3140S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1[more]
P628605.5e-1879.3140S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1[more]
P628615.5e-1879.3140S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1[more]
P628625.5e-1879.3140S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1[more]
BLAST of Lsi06G002380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6P4A6S71.1e-2492.4240S ribosomal protein S30 OS=Ziziphus jujuba OX=326968 GN=LOC107424007 PE=3 SV=1[more]
A0A151SKI73.1e-2480.00Protein transport protein sec16 OS=Cajanus cajan OX=3821 GN=KK1_001578 PE=3 SV=1[more]
B9FRR94.1e-2492.4240S ribosomal protein S30 OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_20291 ... [more]
I1J9W05.3e-2496.8340S ribosomal protein S30 OS=Glycine max OX=3847 GN=GLYMA_01G209400 PE=3 SV=2[more]
A0A151TJD25.3e-2496.8340S ribosomal protein S30 OS=Cajanus cajan OX=3821 GN=KK1_013488 PE=3 SV=1[more]
BLAST of Lsi06G002380 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_015889175.22.2e-2492.42uncharacterized protein LOC107424007 [Ziziphus jujuba][more]
CAF2137490.14.9e-2478.75unnamed protein product [Brassica napus][more]
KYP55364.16.5e-2480.0040S ribosomal protein S30 [Cajanus cajan][more]
KHN42697.18.4e-2489.86Protein transport protein Sec16B [Glycine soja][more]
EEE65180.18.4e-2492.42hypothetical protein OsJ_20291 [Oryza sativa Japonica Group][more]
BLAST of Lsi06G002380 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G19750.11.9e-2696.67Ribosomal protein S30 family protein [more]
AT4G29390.11.9e-2696.67Ribosomal protein S30 family protein [more]
AT5G56670.11.9e-2696.67Ribosomal protein S30 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 40..138
e-value: 2.3E-16
score: 59.7
IPR006846Ribosomal protein S30PFAMPF04758Ribosomal_S30coord: 177..233
e-value: 4.6E-29
score: 100.4
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 35..158
e-value: 1.6E-9
score: 39.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 196..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..211
NoneNo IPR availablePANTHERPTHR1265040S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBIcoord: 177..236
NoneNo IPR availablePANTHERPTHR12650:SF2840S RIBOSOMAL PROTEIN S30coord: 177..236
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 39..138
e-value: 2.83664E-10
score: 54.2424
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 37..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G002380.1Lsi06G002380.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006914 autophagy
biological_process GO:0015031 protein transport
biological_process GO:0006412 translation
biological_process GO:0055085 transmembrane transport
biological_process GO:0048208 COPII vesicle coating
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0070971 endoplasmic reticulum exit site
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0022857 transmembrane transporter activity