Lsi05G015070 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G015070
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	BHLH domain-containing protein
Location	chr05: 22876050 .. 22876750 (+)
RNA-Seq Expression	Lsi05G015070
Synteny	Lsi05G015070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCCTGCACAGATTCTGTGGTTCCACTTTTTCCCCTCATATTGCCCGTGCATCAGTCTGAAGCCACTGAAAAGAAGGCTTCGGCCTCAAGAAAGCGTAGCAGAGCTCTGGAAGCCAACGGCGGTGTACAGAAGAAAGGGAGGGAGAAGAGGAAAGAGATGAGTGAGAGTTTCGATGTACTTCAATCTCTTGTCCCGAATCTCTCTCCTAAGGTTAGTGGATCATGGATTTGATTCTCGCTTTAGTATAATCTGGCTATTTCTAGGTACATTTTGTGTTTGCGGTTTTAATCCTGTTTTGGTGCTGAAATAATCAGGCTACGAGAGAGACTATTGTTTCCGAAACGATCCAGTTCATCGAGTTTCTACAGAAGCAGTTGATGAGGCTGGAAATGGAGAAGAAATCATCGGAATCGGTGACGATGCTTCCGAATACGAACTCGGATTCATCAGGCGGCGGCGTCATTGTCTCGGTCTCCGGCAACATTGTGTTGTTTGGAATTATTATTGCTTCTGTTCAACGAGGTATGGTGACACAGATTTTAATGGTGTTTGAAAGACACCAGGCTGAAGTTCTTGCAGCGAATGTTGCAGTCAGCCATGGCAATTTAACTTTAACAGTCACAGCTTCTGTACACGGTAACGTAGAGAATACCATAGAGCAGATTAGAAACGATATCTTAAGCTTAAAGAAGTAA

mRNA sequence

ATGGAGGCCTGCACAGATTCTGTGGTTCCACTTTTTCCCCTCATATTGCCCGTGCATCAGTCTGAAGCCACTGAAAAGAAGGCTTCGGCCTCAAGAAAGCGTAGCAGAGCTCTGGAAGCCAACGGCGGTGTACAGAAGAAAGGGAGGGAGAAGAGGAAAGAGATGAGTGAGAGTTTCGATGTACTTCAATCTCTTGTCCCGAATCTCTCTCCTAAGGCTACGAGAGAGACTATTGTTTCCGAAACGATCCAGTTCATCGAGTTTCTACAGAAGCAGTTGATGAGGCTGGAAATGGAGAAGAAATCATCGGAATCGGTGACGATGCTTCCGAATACGAACTCGGATTCATCAGGCGGCGGCGTCATTGTCTCGGTCTCCGGCAACATTGTGTTGTTTGGAATTATTATTGCTTCTGTTCAACGAGGTATGGTGACACAGATTTTAATGGTGTTTGAAAGACACCAGGCTGAAGTTCTTGCAGCGAATGTTGCAGTCAGCCATGGCAATTTAACTTTAACAGTCACAGCTTCTGTACACGGTAACGTAGAGAATACCATAGAGCAGATTAGAAACGATATCTTAAGCTTAAAGAAGTAA

Coding sequence (CDS)

ATGGAGGCCTGCACAGATTCTGTGGTTCCACTTTTTCCCCTCATATTGCCCGTGCATCAGTCTGAAGCCACTGAAAAGAAGGCTTCGGCCTCAAGAAAGCGTAGCAGAGCTCTGGAAGCCAACGGCGGTGTACAGAAGAAAGGGAGGGAGAAGAGGAAAGAGATGAGTGAGAGTTTCGATGTACTTCAATCTCTTGTCCCGAATCTCTCTCCTAAGGCTACGAGAGAGACTATTGTTTCCGAAACGATCCAGTTCATCGAGTTTCTACAGAAGCAGTTGATGAGGCTGGAAATGGAGAAGAAATCATCGGAATCGGTGACGATGCTTCCGAATACGAACTCGGATTCATCAGGCGGCGGCGTCATTGTCTCGGTCTCCGGCAACATTGTGTTGTTTGGAATTATTATTGCTTCTGTTCAACGAGGTATGGTGACACAGATTTTAATGGTGTTTGAAAGACACCAGGCTGAAGTTCTTGCAGCGAATGTTGCAGTCAGCCATGGCAATTTAACTTTAACAGTCACAGCTTCTGTACACGGTAACGTAGAGAATACCATAGAGCAGATTAGAAACGATATCTTAAGCTTAAAGAAGTAA

Protein sequence

MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNTNSDSSGGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLKK

Homology

[Close]

BLAST of Lsi05G015070 vs. ExPASy Swiss-Prot
Match: Q9FXA3 (Transcription factor bHLH95 OS=Arabidopsis thaliana OX=3702 GN=BHLH95 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-04
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 49  REKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK-----KSS 108
           RE+RK+M + F  L +L+P L PKA + TIV E +  I+ L++ L +LEM+K      SS
Sbjct: 79  RERRKKMRDMFSKLHALLPQLPPKADKSTIVDEAVSSIKSLEQTLQKLEMQKLEKLQYSS 138

Query: 109 ESVTMLPNT------NSDSSGGGVIVSVSGN 129
            S    P T      +S SS   ++  +S +
Sbjct: 139 ASTNTTPTTTFAYAPSSSSSPTALLTPISNH 169

[Close]

BLAST of Lsi05G015070 vs. ExPASy TrEMBL
Match: A0A5A7U767 (Transcription factor bHLH95-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00480 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.3e-84
Identity = 178/201 (88.56%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 1   MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFD 60
           MEAC+DSVVPLFPLILP+H  EATEK+ASASRKR RALEANGGVQKK +EKRKEMSESFD
Sbjct: 1   MEACSDSVVPLFPLILPIHHFEATEKEASASRKRCRALEANGGVQKKEKEKRKEMSESFD 60

Query: 61  VLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNTNSDSSGG- 120
           VL+SLVPNLSPKATRETIVS  IQFIEFLQKQLMRLEMEKKSSESVT+LPN+NSDSSGG 
Sbjct: 61  VLRSLVPNLSPKATRETIVSGAIQFIEFLQKQLMRLEMEKKSSESVTLLPNSNSDSSGGN 120

Query: 121 --GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTAS 180
             GVIVS+SGNIVLFG+IIASVQRGMVTQIL+VFERH+ EVLAANV VSHGNLTLTVTAS
Sbjct: 121 GDGVIVSISGNIVLFGVIIASVQRGMVTQILLVFERHKTEVLAANVVVSHGNLTLTVTAS 180

Query: 181 VHGNVENTIEQIRNDILSLKK 199
           VHG VENTIEQIRNDILSLKK
Sbjct: 181 VHGYVENTIEQIRNDILSLKK 201

[Close]

BLAST of Lsi05G015070 vs. ExPASy TrEMBL
Match: A0A1S4DSM0 (transcription factor bHLH95-like OS=Cucumis melo OX=3656 GN=LOC103483801 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.3e-84
Identity = 178/201 (88.56%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 1   MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFD 60
           MEAC+DSVVPLFPLILP+H  EATEK+ASASRKR RALEANGGVQKK +EKRKEMSESFD
Sbjct: 1   MEACSDSVVPLFPLILPIHHFEATEKEASASRKRCRALEANGGVQKKEKEKRKEMSESFD 60

Query: 61  VLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNTNSDSSGG- 120
           VL+SLVPNLSPKATRETIVS  IQFIEFLQKQLMRLEMEKKSSESVT+LPN+NSDSSGG 
Sbjct: 61  VLRSLVPNLSPKATRETIVSGAIQFIEFLQKQLMRLEMEKKSSESVTLLPNSNSDSSGGN 120

Query: 121 --GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTAS 180
             GVIVS+SGNIVLFG+IIASVQRGMVTQIL+VFERH+ EVLAANV VSHGNLTLTVTAS
Sbjct: 121 GDGVIVSISGNIVLFGVIIASVQRGMVTQILLVFERHKTEVLAANVVVSHGNLTLTVTAS 180

Query: 181 VHGNVENTIEQIRNDILSLKK 199
           VHG VENTIEQIRNDILSLKK
Sbjct: 181 VHGYVENTIEQIRNDILSLKK 201

[Close]

BLAST of Lsi05G015070 vs. ExPASy TrEMBL
Match: A0A6J1GWN9 (uncharacterized protein LOC111457820 OS=Cucurbita moschata OX=3662 GN=LOC111457838 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.7e-84
Identity = 180/198 (90.91%), Postives = 183/198 (92.42%), Query Frame = 0


Query: 1   MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFD 60
           MEACTDSVV L P ILPVHQSEA E KAS SRKR RALEANGGVQ+KGREKRKEMSESFD
Sbjct: 1   MEACTDSVVSLLPHILPVHQSEAAENKASTSRKRRRALEANGGVQRKGREKRKEMSESFD 60

Query: 61  VLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNTNSDSSGGG 120
           VLQSLVPNLSPKATRETIVSETIQFIE LQKQLMRLEMEKK  ESVTMLP+TNSDS GGG
Sbjct: 61  VLQSLVPNLSPKATRETIVSETIQFIEDLQKQLMRLEMEKKPLESVTMLPSTNSDSPGGG 120

Query: 121 VIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHG 180
           VIVSVS NIVLFGII ASV+RGMVTQILM FERHQAEVLAANVAVSHGNLTLTVTASVHG
Sbjct: 121 VIVSVSSNIVLFGIIFASVRRGMVTQILMAFERHQAEVLAANVAVSHGNLTLTVTASVHG 180

Query: 181 NVENTIEQIRNDILSLKK 199
            VENTIEQIRNDILSLKK
Sbjct: 181 YVENTIEQIRNDILSLKK 198

[Close]

BLAST of Lsi05G015070 vs. ExPASy TrEMBL
Match: A0A0A0L5R7 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G151510 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 6.6e-84
Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 1   MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFD 60
           MEAC+DSV+PLFPLILPVH  EATEK+ASASRKR RALEANGGVQKK +EKRKEMSESFD
Sbjct: 1   MEACSDSVIPLFPLILPVHHFEATEKEASASRKRCRALEANGGVQKKEKEKRKEMSESFD 60

Query: 61  VLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNTNSDSSGG- 120
           VL+SLVPNLSPKATRETIVS  IQFIEFLQKQLMRLEMEKKSSESV +LPNTNSDSSGG 
Sbjct: 61  VLRSLVPNLSPKATRETIVSGAIQFIEFLQKQLMRLEMEKKSSESVALLPNTNSDSSGGI 120

Query: 121 ---GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTA 180
              GVIVS+SGNIVLFG+IIASVQRG+VTQIL+VFERH+AEVLAANV VSHGNLTLTVTA
Sbjct: 121 NGDGVIVSISGNIVLFGVIIASVQRGIVTQILLVFERHKAEVLAANVVVSHGNLTLTVTA 180

Query: 181 SVHGNVENTIEQIRNDILSLKK 199
           SVHG VENTIEQIRNDIL LKK
Sbjct: 181 SVHGYVENTIEQIRNDILGLKK 202

[Close]

BLAST of Lsi05G015070 vs. ExPASy TrEMBL
Match: A0A6J1IS55 (uncharacterized protein LOC111479473 OS=Cucurbita maxima OX=3661 GN=LOC111479473 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 3.1e-81
Identity = 178/203 (87.68%), Postives = 182/203 (89.66%), Query Frame = 0


Query: 1   MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFD 60
           MEACTDSVV L P ILPVHQSEA E KAS SRKR RALEANGG Q+KGREKRKEMSESFD
Sbjct: 1   MEACTDSVVSLLPHILPVHQSEAAENKASTSRKRWRALEANGGEQRKGREKRKEMSESFD 60

Query: 61  VLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNTNSDSSG-- 120
           VLQSLVPNLSPKATRETIVSETIQFIE LQKQLMRLEMEKK  ESVTMLP+TNSDS G  
Sbjct: 61  VLQSLVPNLSPKATRETIVSETIQFIEDLQKQLMRLEMEKKPLESVTMLPSTNSDSPGGD 120

Query: 121 ---GGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVT 180
              GGVIVSVS NIVLFGII ASV+RGMVT+ILM FERHQAEVLAANVAVSHGNLTLTVT
Sbjct: 121 GGDGGVIVSVSSNIVLFGIIFASVRRGMVTRILMAFERHQAEVLAANVAVSHGNLTLTVT 180

Query: 181 ASVHGNVENTIEQIRNDILSLKK 199
           ASVHG VENTIEQIRNDILSLKK
Sbjct: 181 ASVHGYVENTIEQIRNDILSLKK 203

[Close]

BLAST of Lsi05G015070 vs. NCBI nr
Match: XP_038885840.1 (transcription factor bHLH95-like [Benincasa hispida])

HSP 1 Score: 340.5 bits (872), Expect = 9.7e-90
Identity = 192/201 (95.52%), Postives = 194/201 (96.52%), Query Frame = 0


Query: 1   MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFD 60
           MEACTDSVVPLFPLILPVHQSEATEKKASASRKR RALEANGGVQKK REKRKEMSESFD
Sbjct: 1   MEACTDSVVPLFPLILPVHQSEATEKKASASRKRIRALEANGGVQKKEREKRKEMSESFD 60

Query: 61  VLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNTNSDSS--- 120
           VLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLP+TNSDSS   
Sbjct: 61  VLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPSTNSDSSGGG 120

Query: 121 GGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTAS 180
           GGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTAS
Sbjct: 121 GGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTAS 180

Query: 181 VHGNVENTIEQIRNDILSLKK 199
           VHG VENTIE I+NDILSLKK
Sbjct: 181 VHGYVENTIELIKNDILSLKK 201

[Close]

BLAST of Lsi05G015070 vs. NCBI nr
Match: XP_016898986.1 (PREDICTED: transcription factor bHLH95-like [Cucumis melo] >KAA0049445.1 transcription factor bHLH95-like [Cucumis melo var. makuwa] >TYK16124.1 transcription factor bHLH95-like [Cucumis melo var. makuwa])

HSP 1 Score: 322.4 bits (825), Expect = 2.7e-84
Identity = 178/201 (88.56%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 1   MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFD 60
           MEAC+DSVVPLFPLILP+H  EATEK+ASASRKR RALEANGGVQKK +EKRKEMSESFD
Sbjct: 1   MEACSDSVVPLFPLILPIHHFEATEKEASASRKRCRALEANGGVQKKEKEKRKEMSESFD 60

Query: 61  VLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNTNSDSSGG- 120
           VL+SLVPNLSPKATRETIVS  IQFIEFLQKQLMRLEMEKKSSESVT+LPN+NSDSSGG 
Sbjct: 61  VLRSLVPNLSPKATRETIVSGAIQFIEFLQKQLMRLEMEKKSSESVTLLPNSNSDSSGGN 120

Query: 121 --GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTAS 180
             GVIVS+SGNIVLFG+IIASVQRGMVTQIL+VFERH+ EVLAANV VSHGNLTLTVTAS
Sbjct: 121 GDGVIVSISGNIVLFGVIIASVQRGMVTQILLVFERHKTEVLAANVVVSHGNLTLTVTAS 180

Query: 181 VHGNVENTIEQIRNDILSLKK 199
           VHG VENTIEQIRNDILSLKK
Sbjct: 181 VHGYVENTIEQIRNDILSLKK 201

[Close]

BLAST of Lsi05G015070 vs. NCBI nr
Match: XP_022955986.1 (uncharacterized protein LOC111457820 [Cucurbita moschata] >XP_022956015.1 uncharacterized protein LOC111457838 isoform X1 [Cucurbita moschata])

HSP 1 Score: 322.0 bits (824), Expect = 3.6e-84
Identity = 180/198 (90.91%), Postives = 183/198 (92.42%), Query Frame = 0


Query: 1   MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFD 60
           MEACTDSVV L P ILPVHQSEA E KAS SRKR RALEANGGVQ+KGREKRKEMSESFD
Sbjct: 1   MEACTDSVVSLLPHILPVHQSEAAENKASTSRKRRRALEANGGVQRKGREKRKEMSESFD 60

Query: 61  VLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNTNSDSSGGG 120
           VLQSLVPNLSPKATRETIVSETIQFIE LQKQLMRLEMEKK  ESVTMLP+TNSDS GGG
Sbjct: 61  VLQSLVPNLSPKATRETIVSETIQFIEDLQKQLMRLEMEKKPLESVTMLPSTNSDSPGGG 120

Query: 121 VIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHG 180
           VIVSVS NIVLFGII ASV+RGMVTQILM FERHQAEVLAANVAVSHGNLTLTVTASVHG
Sbjct: 121 VIVSVSSNIVLFGIIFASVRRGMVTQILMAFERHQAEVLAANVAVSHGNLTLTVTASVHG 180

Query: 181 NVENTIEQIRNDILSLKK 199
            VENTIEQIRNDILSLKK
Sbjct: 181 YVENTIEQIRNDILSLKK 198

[Close]

BLAST of Lsi05G015070 vs. NCBI nr
Match: KAG6582238.1 (Transcription factor basic helix-loop-helix 95, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018637.1 Transcription factor bHLH95 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322.0 bits (824), Expect = 3.6e-84
Identity = 180/198 (90.91%), Postives = 183/198 (92.42%), Query Frame = 0


Query: 1   MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFD 60
           MEACTDSVV L P ILPVHQSEA E KAS SRKR RALEANGGVQ+KGREKRKEMSESFD
Sbjct: 1   MEACTDSVVTLLPHILPVHQSEAAENKASTSRKRRRALEANGGVQRKGREKRKEMSESFD 60

Query: 61  VLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNTNSDSSGGG 120
           VLQSLVPNLSPKATRETIVSETIQFIE LQKQLMRLEMEKK  ESVTMLP+TNSDS GGG
Sbjct: 61  VLQSLVPNLSPKATRETIVSETIQFIEDLQKQLMRLEMEKKPLESVTMLPSTNSDSPGGG 120

Query: 121 VIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHG 180
           VIVSVS NIVLFGII ASV+RGMVTQILM FERHQAEVLAANVAVSHGNLTLTVTASVHG
Sbjct: 121 VIVSVSSNIVLFGIIFASVRRGMVTQILMAFERHQAEVLAANVAVSHGNLTLTVTASVHG 180

Query: 181 NVENTIEQIRNDILSLKK 199
            VENTIEQIRNDILSLKK
Sbjct: 181 YVENTIEQIRNDILSLKK 198

[Close]

BLAST of Lsi05G015070 vs. NCBI nr
Match: XP_004134190.1 (transcription factor bHLH95 [Cucumis sativus] >KGN57073.1 hypothetical protein Csa_011665 [Cucumis sativus])

HSP 1 Score: 320.1 bits (819), Expect = 1.4e-83
Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 1   MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFD 60
           MEAC+DSV+PLFPLILPVH  EATEK+ASASRKR RALEANGGVQKK +EKRKEMSESFD
Sbjct: 1   MEACSDSVIPLFPLILPVHHFEATEKEASASRKRCRALEANGGVQKKEKEKRKEMSESFD 60

Query: 61  VLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLPNTNSDSSGG- 120
           VL+SLVPNLSPKATRETIVS  IQFIEFLQKQLMRLEMEKKSSESV +LPNTNSDSSGG 
Sbjct: 61  VLRSLVPNLSPKATRETIVSGAIQFIEFLQKQLMRLEMEKKSSESVALLPNTNSDSSGGI 120

Query: 121 ---GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTA 180
              GVIVS+SGNIVLFG+IIASVQRG+VTQIL+VFERH+AEVLAANV VSHGNLTLTVTA
Sbjct: 121 NGDGVIVSISGNIVLFGVIIASVQRGIVTQILLVFERHKAEVLAANVVVSHGNLTLTVTA 180

Query: 181 SVHGNVENTIEQIRNDILSLKK 199
           SVHG VENTIEQIRNDIL LKK
Sbjct: 181 SVHGYVENTIEQIRNDILGLKK 202

[Close]

BLAST of Lsi05G015070 vs. TAIR 10
Match: AT1G49770.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 9.3e-06
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 49  REKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK-----KSS 108
           RE+RK+M + F  L +L+P L PKA + TIV E +  I+ L++ L +LEM+K      SS
Sbjct: 79  RERRKKMRDMFSKLHALLPQLPPKADKSTIVDEAVSSIKSLEQTLQKLEMQKLEKLQYSS 138

Query: 109 ESVTMLPNT------NSDSSGGGVIVSVSGN 129
            S    P T      +S SS   ++  +S +
Sbjct: 139 ASTNTTPTTTFAYAPSSSSSPTALLTPISNH 169

The following BLAST results are available for this feature:

BLAST of Lsi05G015070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FXA3	1.3e-04	36.26	Transcription factor bHLH95 OS=Arabidopsis thaliana OX=3702 GN=BHLH95 PE=2 SV=2	[more]

BLAST of Lsi05G015070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U767	1.3e-84	88.56	Transcription factor bHLH95-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4DSM0	1.3e-84	88.56	transcription factor bHLH95-like OS=Cucumis melo OX=3656 GN=LOC103483801 PE=4 SV...	[more]
A0A6J1GWN9	1.7e-84	90.91	uncharacterized protein LOC111457820 OS=Cucurbita moschata OX=3662 GN=LOC1114578...	[more]
A0A0A0L5R7	6.6e-84	87.62	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G151510 PE=4 S...	[more]
A0A6J1IS55	3.1e-81	87.68	uncharacterized protein LOC111479473 OS=Cucurbita maxima OX=3661 GN=LOC111479473...	[more]

BLAST of Lsi05G015070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885840.1	9.7e-90	95.52	transcription factor bHLH95-like [Benincasa hispida]	[more]
XP_016898986.1	2.7e-84	88.56	PREDICTED: transcription factor bHLH95-like [Cucumis melo] >KAA0049445.1 transcr...	[more]
XP_022955986.1	3.6e-84	90.91	uncharacterized protein LOC111457820 [Cucurbita moschata] >XP_022956015.1 unchar...	[more]
KAG6582238.1	3.6e-84	90.91	Transcription factor basic helix-loop-helix 95, partial [Cucurbita argyrosperma ...	[more]
XP_004134190.1	1.4e-83	87.62	transcription factor bHLH95 [Cucumis sativus] >KGN57073.1 hypothetical protein C...	[more]

BLAST of Lsi05G015070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49770.1	9.3e-06	36.26	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 179..198
None	No IPR available	COILS	Coil	Coil	coord: 86..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..54
None	No IPR available	PANTHER	PTHR31945:SF53	HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN	coord: 7..195
None	No IPR available	PANTHER	PTHR31945	TRANSCRIPTION FACTOR SCREAM2-RELATED	coord: 7..195
None	No IPR available	CDD	cd11393	bHLH_AtbHLH_like	coord: 49..97 e-value: 7.19336E-10 score: 50.6428
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 47..95 e-value: 3.9E-5 score: 33.1
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 39..89 score: 9.381474
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 21..105 e-value: 9.6E-9 score: 37.0
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 49..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G015070.1	Lsi05G015070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding