Lsi05G014280 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G014280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem I reaction center subunit II, chloroplastic
Location	chr05: 22189624 .. 22190247 (-)
RNA-Seq Expression	Lsi05G014280
Synteny	Lsi05G014280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGGCTGCTCAAGCAACCCTTTTCACCCCATCTCTCTCCACCCCCAAATCCACCGCCATTACCGTCCCATGGAAGCAATCCCCAACTCTCTCCTTCATCAACTCCAAACCCCATCTCAAACCCGCCTCCTCTTCCCGCTCACTCAAGGTCTCTGCCGAAGCCGAGGCCGCAGTTGAGGCTCCTGCTGGATTCTCCCCACCGGAGCTCGACCCAACCACCCCTTCCCCGATCTTCGCCGGCAGCACCGGGGGACTGCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTGATCACATGGGAGTCCCCCAAGGAGCAAATCTTCGAGATGCCAACCGGCGGAGCGGCGATCATGCGAGAAGGGCCAAATCTGCTGAAATTGGCGAGGAAAGAGCAGTGCTTGGCTTTGGGGACAAGGCTGAGATCTAAATACAAGATCAAGTACCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATTGGGAAGAATGTAAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

mRNA sequence

ATGGCCATGGCTGCTCAAGCAACCCTTTTCACCCCATCTCTCTCCACCCCCAAATCCACCGCCATTACCGTCCCATGGAAGCAATCCCCAACTCTCTCCTTCATCAACTCCAAACCCCATCTCAAACCCGCCTCCTCTTCCCGCTCACTCAAGGTCTCTGCCGAAGCCGAGGCCGCAGTTGAGGCTCCTGCTGGATTCTCCCCACCGGAGCTCGACCCAACCACCCCTTCCCCGATCTTCGCCGGCAGCACCGGGGGACTGCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTGATCACATGGGAGTCCCCCAAGGAGCAAATCTTCGAGATGCCAACCGGCGGAGCGGCGATCATGCGAGAAGGGCCAAATCTGCTGAAATTGGCGAGGAAAGAGCAGTGCTTGGCTTTGGGGACAAGGCTGAGATCTAAATACAAGATCAAGTACCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATTGGGAAGAATGTAAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Coding sequence (CDS)

ATGGCCATGGCTGCTCAAGCAACCCTTTTCACCCCATCTCTCTCCACCCCCAAATCCACCGCCATTACCGTCCCATGGAAGCAATCCCCAACTCTCTCCTTCATCAACTCCAAACCCCATCTCAAACCCGCCTCCTCTTCCCGCTCACTCAAGGTCTCTGCCGAAGCCGAGGCCGCAGTTGAGGCTCCTGCTGGATTCTCCCCACCGGAGCTCGACCCAACCACCCCTTCCCCGATCTTCGCCGGCAGCACCGGGGGACTGCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTGATCACATGGGAGTCCCCCAAGGAGCAAATCTTCGAGATGCCAACCGGCGGAGCGGCGATCATGCGAGAAGGGCCAAATCTGCTGAAATTGGCGAGGAAAGAGCAGTGCTTGGCTTTGGGGACAAGGCTGAGATCTAAATACAAGATCAAGTACCAATTTTATAGGGTTTTTCCTAATGGGGAAGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCAGAGAAGGTGAATCCAGGAAGGGAAGGAGTTGGTCAGAACTTCAGGTCTATTGGGAAGAATGTAAGCCCCATTGAAGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA

Protein sequence

MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL

Homology

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BLAST of Lsi05G014280 vs. ExPASy Swiss-Prot
Match: P32869 (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=3659 GN=psaD PE=1 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 2.5e-107
Identity = 195/207 (94.20%), Postives = 200/207 (96.62%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAV 60
           MAMA QATLFTPSLSTPKST I++PWKQS TLSF+ SKPHLK ASSSRS KVSAEAE +V
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of Lsi05G014280 vs. ExPASy Swiss-Prot
Match: P12372 (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum OX=4081 GN=psaD PE=2 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 1.9e-86
Identity = 170/211 (80.57%), Postives = 179/211 (84.83%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSA-EAEAA 60
           MAMA QA+LFTP LS PKST  T PWKQS  +SF   K      S +R ++  A EA AA
Sbjct: 1   MAMATQASLFTPPLSVPKST--TAPWKQS-LVSFSTPKQLKSTVSVTRPIRAMAEEAPAA 60

Query: 61  VE---APAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120
            E   APAGF+PP+LDP TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA
Sbjct: 61  TEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 120

Query: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180
           AIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNP
Sbjct: 121 AIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNP 180

Query: 181 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GREGVGQNFRSIGKN S IEVKFTGKQVYD+
Sbjct: 181 GREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

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BLAST of Lsi05G014280 vs. ExPASy Swiss-Prot
Match: P29302 (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=psaD PE=2 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.7e-84
Identity = 164/209 (78.47%), Postives = 176/209 (84.21%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAA- 60
           MAMA QA+LFTP+LS PKS+A   PWKQS  L+  + K      S+ R ++  AE  A  
Sbjct: 1   MAMATQASLFTPALSAPKSSA---PWKQS--LASFSPKQLKSTVSAPRPIRAMAEEAATK 60

Query: 61  -VEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
             EAP GF+PP+LDP TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  EAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MREG NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR
Sbjct: 121 MREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           +GVGQNFRSIGKN SPIEVKFTGKQVYDL
Sbjct: 181 QGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204

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BLAST of Lsi05G014280 vs. ExPASy Swiss-Prot
Match: P12353 (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=3562 GN=psaD PE=1 SV=2)

HSP 1 Score: 309.7 bits (792), Expect = 2.5e-83
Identity = 164/217 (75.58%), Postives = 177/217 (81.57%), Query Frame = 0


Query: 1   MAMAAQATLFTP---SLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAE 60
           MAMA QATLF+P   S + P  T +T  +KQ   ++F +     KPAS   S++ +A AE
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFAS-----KPASRHHSIRAAAAAE 60

Query: 61  AAV-------EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE 120
                     EAP GF+PPELDP TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE
Sbjct: 61  GKAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFE 120

Query: 121 MPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVY 180
           MPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVY
Sbjct: 121 MPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVY 180

Query: 181 PEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           PEKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 PEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

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BLAST of Lsi05G014280 vs. ExPASy Swiss-Prot
Match: Q9SA56 (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAD2 PE=1 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.3e-76
Identity = 154/210 (73.33%), Postives = 166/210 (79.05%), Query Frame = 0


Query: 3   MAAQAT-LFTPSLSTPKSTAITVPWKQS----PTLSFINSKPHLKPASSSRSLKVSAEAE 62
           MA QA  +F+P+++T  S    +    S     +LSF       K A  +   + S+ A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSF------TKTAIRAEKTESSSAAP 60

Query: 63  AAVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
           A  EAP GF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

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BLAST of Lsi05G014280 vs. ExPASy TrEMBL
Match: A0A5D3D399 (Photosystem I reaction center subunit II OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00340 PE=3 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.3e-106
Identity = 198/207 (95.65%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAV 60
           MAMA QATLFTPSLSTPKS+AI++PWKQSPTLSF+ SKPHLK ASSSRSLKVSAEAEAAV
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Lsi05G014280 vs. ExPASy TrEMBL
Match: A0A1S3AXN9 (photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483718 PE=3 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.3e-106
Identity = 198/207 (95.65%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAV 60
           MAMA QATLFTPSLSTPKS+AI++PWKQSPTLSF+ SKPHLK ASSSRSLKVSAEAEAAV
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Lsi05G014280 vs. ExPASy TrEMBL
Match: A0A0A0L4Y6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147780 PE=3 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 9.2e-105
Identity = 195/207 (94.20%), Postives = 200/207 (96.62%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAV 60
           MAMA QATLFTPSLSTPKST I++PWKQS TLSF+ SKPHLK ASSSRS KVSAEAE +V
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Lsi05G014280 vs. ExPASy TrEMBL
Match: A0A6J1GWF9 (photosystem I reaction center subunit II, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457767 PE=3 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 4.6e-104
Identity = 196/208 (94.23%), Postives = 203/208 (97.60%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAE-AA 60
           MAMAAQATLFTPSLSTPKSTA+T+PWKQS TLSFINSKP +KPA+SSR +KVSAEAE AA
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  VEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Lsi05G014280 vs. ExPASy TrEMBL
Match: A0A6J1INM6 (photosystem I reaction center subunit II, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479135 PE=3 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.7e-103
Identity = 195/208 (93.75%), Postives = 202/208 (97.12%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAE-AA 60
           MAMAAQATLFTPSLSTPKSTA+T+PWKQS TL FINSKP +KPA+SSR +KVSAEAE AA
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLCFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  VEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Lsi05G014280 vs. NCBI nr
Match: XP_038876164.1 (photosystem I reaction center subunit II, chloroplastic [Benincasa hispida])

HSP 1 Score: 407.9 bits (1047), Expect = 5.2e-110
Identity = 206/207 (99.52%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAV 60
           MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAV
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAV 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Lsi05G014280 vs. NCBI nr
Match: XP_008438687.1 (PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo] >KAA0049370.1 photosystem I reaction center subunit II [Cucumis melo var. makuwa] >TYK17189.1 photosystem I reaction center subunit II [Cucumis melo var. makuwa])

HSP 1 Score: 395.6 bits (1015), Expect = 2.7e-106
Identity = 198/207 (95.65%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAV 60
           MAMA QATLFTPSLSTPKS+AI++PWKQSPTLSF+ SKPHLK ASSSRSLKVSAEAEAAV
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPWKQSPTLSFLTSKPHLKTASSSRSLKVSAEAEAAV 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Lsi05G014280 vs. NCBI nr
Match: XP_004134141.1 (photosystem I reaction center subunit II, chloroplastic [Cucumis sativus] >P32869.1 RecName: Full=Photosystem I reaction center subunit II, chloroplastic; AltName: Full=PS I subunit 5; AltName: Full=Photosystem I 20 kDa subunit; Short=PSI-D; Flags: Precursor [Cucumis sativus] >KGN56995.1 hypothetical protein Csa_010286 [Cucumis sativus] >prf||1710320A photosystem I 20kD protein [Cucumis sativus])

HSP 1 Score: 389.4 bits (999), Expect = 1.9e-104
Identity = 195/207 (94.20%), Postives = 200/207 (96.62%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAEAAV 60
           MAMA QATLFTPSLSTPKST I++PWKQS TLSF+ SKPHLK ASSSRS KVSAEAE +V
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120
           EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180
           EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG
Sbjct: 121 EGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           VGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Lsi05G014280 vs. NCBI nr
Match: XP_022955930.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata])

HSP 1 Score: 387.1 bits (993), Expect = 9.5e-104
Identity = 196/208 (94.23%), Postives = 203/208 (97.60%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAE-AA 60
           MAMAAQATLFTPSLSTPKSTA+T+PWKQS TLSFINSKP +KPA+SSR +KVSAEAE AA
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  VEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120
            EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM
Sbjct: 61  TEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 REGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180
           R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Lsi05G014280 vs. NCBI nr
Match: XP_023528925.1 (photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 386.7 bits (992), Expect = 1.2e-103
Identity = 196/209 (93.78%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 1   MAMAAQATLFTPSLSTPKSTAITVPWKQSPTLSFINSKPHLKPASSSRSLKVSAEAE--A 60
           MAMAAQATLFTPSLSTPKSTA+T+PWKQS TLSFINSKP +KPA+SSR +KVSAEAE  A
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPWKQSSTLSFINSKPLIKPAASSRIVKVSAEAEAAA 60

Query: 61  AVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120
           A EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI
Sbjct: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           EGVGQNFRSIGKNVSPIEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 209

[Close]

BLAST of Lsi05G014280 vs. TAIR 10
Match: AT1G03130.1 (photosystem I subunit D-2 )

HSP 1 Score: 286.6 bits (732), Expect = 1.6e-77
Identity = 154/210 (73.33%), Postives = 166/210 (79.05%), Query Frame = 0


Query: 3   MAAQAT-LFTPSLSTPKSTAITVPWKQS----PTLSFINSKPHLKPASSSRSLKVSAEAE 62
           MA QA  +F+P+++T  S    +    S     +LSF       K A  +   + S+ A 
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSF------TKTAIRAEKTESSSAAP 60

Query: 63  AAVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 122
           A  EAP GF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAA
Sbjct: 61  AVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAA 120

Query: 123 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 182
           IMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPG
Sbjct: 121 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 180

Query: 183 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           REGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of Lsi05G014280 vs. TAIR 10
Match: AT4G02770.1 (photosystem I subunit D-1 )

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-76
Identity = 153/211 (72.51%), Postives = 166/211 (78.67%), Query Frame = 0


Query: 3   MAAQAT-LFTPSLSTPKSTAITVPWKQSPT-----LSFINSKPHLKPASSSRSLKVSAEA 62
           MA QA  +F  +++T  ++ +      S T     LSF  +    +   SS +   +A A
Sbjct: 1   MATQAAGIFNSAITTAATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSSAA---AAAA 60

Query: 63  EAAVEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 122
            A  EAP GF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGA
Sbjct: 61  PATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGA 120

Query: 123 AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 182
           AIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NP
Sbjct: 121 AIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANP 180

Query: 183 GREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208
           GREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct: 181 GREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

The following BLAST results are available for this feature:

BLAST of Lsi05G014280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32869	2.5e-107	94.20	Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=36...	[more]
P12372	1.9e-86	80.57	Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ...	[more]
P29302	1.7e-84	78.47	Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ...	[more]
P12353	2.5e-83	75.58	Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q9SA56	2.3e-76	73.33	Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Lsi05G014280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D399	1.3e-106	95.65	Photosystem I reaction center subunit II OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3AXN9	1.3e-106	95.65	photosystem I reaction center subunit II, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A0A0L4Y6	9.2e-105	94.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147780 PE=3 SV=1	[more]
A0A6J1GWF9	4.6e-104	94.23	photosystem I reaction center subunit II, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A6J1INM6	1.7e-103	93.75	photosystem I reaction center subunit II, chloroplastic OS=Cucurbita maxima OX=3...	[more]

BLAST of Lsi05G014280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876164.1	5.2e-110	99.52	photosystem I reaction center subunit II, chloroplastic [Benincasa hispida]	[more]
XP_008438687.1	2.7e-106	95.65	PREDICTED: photosystem I reaction center subunit II, chloroplastic [Cucumis melo...	[more]
XP_004134141.1	1.9e-104	94.20	photosystem I reaction center subunit II, chloroplastic [Cucumis sativus] >P3286...	[more]
XP_022955930.1	9.5e-104	94.23	photosystem I reaction center subunit II, chloroplastic [Cucurbita moschata]	[more]
XP_023528925.1	1.2e-103	93.78	photosystem I reaction center subunit II, chloroplastic [Cucurbita pepo subsp. p...	[more]

BLAST of Lsi05G014280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03130.1	1.6e-77	73.33	photosystem I subunit D-2	[more]
AT4G02770.1	1.4e-76	72.51	photosystem I subunit D-1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003685	Photosystem I PsaD	PFAM	PF02531	PsaD	coord: 74..205 e-value: 5.4E-68 score: 226.8
IPR003685	Photosystem I PsaD	PANTHER	PTHR31982	PHOTOSYSTEM I REACTION CENTER SUBUNIT II-1, CHLOROPLASTIC-RELATED	coord: 1..207
None	No IPR available	GENE3D	3.30.1470.10	Photosystem I PsaD, reaction center subunit II	coord: 65..207 e-value: 4.4E-77 score: 258.3
IPR036579	Photosystem I, reaction centre subunit PsaD superfamily	SUPERFAMILY	64234	Photosystem I subunit PsaD	coord: 72..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G014280.1	Lsi05G014280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I