Lsi05G012800 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G012800
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	MADS-box transcription factor 17-like
Location	chr05: 20545030 .. 20552213 (-)
RNA-Seq Expression	Lsi05G012800
Synteny	Lsi05G012800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATAAGGGATATCGATCATCATGGGAAGGGGAAAAGTAGTGCTTGAGAGAATAGAGAACAAAGTGAATCGTCAAGTTACCTTCTCAAAACGAAGAAATGGGTTATTGAAGAAGGCTTGTGAGCTCTCTGTGCTTTGTGATGTTGATGTTGCTCTTATCATCTTCTCTACTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGAGTATATATATATATATATATACTAATTTCTTTTTTTTCTTTTCTTTTTTTAATCCTCTTCTTTTTTCTTCCATTATTTATGGGAACTATTCATCACTTCCATGATCAGCATGAACAAAATCCTTGAGAAGTATCACCAGCGATGTTACAGCTCTGGATCAAGCACCAATCTTGATGAGAGTGACATACAGGTTTTCATTTCTTCTTATTTCCCTTTAATTTTCTCACACAAATTTAAAACAATCTCAATTCATTTTAACCTTATGACAGACATAAGATTTTTTTTTTATAGTTCGTATAGTTGGGAGATCGAATGCAATTTATGCCTTATTCACTCAGTTATATGTTCAAATCGACTTATAGGATATAGGGTTGGTTTCAAAGAAAGATTTTTTTATTTTTATTTTTATTTTTATTTATTTTTATTTTTTTTTGGGGGGGGGGGGGGGGTTTGAATCTGTTAGTGATGATGATGATGATGATCTACATCTTGATAATGCAGATAGAGGAGGTGTCAAAGCTCAGAGCCAAATATGAATCTCTTCAGCGTTCCCATAGGTTAATTAATTAAATCAAGACCTATTTTTTTTATTATTTAATAAAAACTCTTCGTTTGATGTGTGTTTTGTGAATTTGAAGGAACTTTCTTGGAGAAGAACTTGAACCACTGAACCTAAAAGAGTTGCATAATCTTGAGAAGCAGTTGGACAAAACTCTTTCACACGCTAGACAGCGGAAGGTAATTCAGGATAAGGATTGTTTTTTCCTTTTTTTTTTATTCTTTTTATTCTGTTGGAATCACTAAAATTTCATTACAATAATGAATGATTCCTCTACTGACTAGTGTTTTCTCCCAATTACAATCTTTTGTCTATTAATTTATTGGATCTTTTTATCAAAAACTCGGATTTGGTCCGACCCAAAATGATTTTGATATCTATCATATTTCTGAATTGATTATAAACGAGTTACCAAAAGAATATGGAAGGATTTCTTTAATTGTTTAGAGGTTGTGATTATTTTATGTTGTCCTTTTTTCATACATGATATGCTTTTCGTTGTCAACAATAGTGGATAGATTGAATCAAATTCGAAAAGTTATGTCTTTGGTTTTGATACTGATTTAACTTTTTTAGAAAAGTTGACACTGATTTAACTAAGCATAACAATATTTTGAAAGTCCTCCCTTCGAATACATGTGTGGTGTTGTTATTTTCAAACATCTTATTATTAGGGCACATAGAATTGCAAATCTTATGAATAGAAATAATATTTGATAAGTATCCATAATATCAAATATGGTTAATTTTATTTTAAAAAGGTTTAAACTTGTGAACTTATTTATATTTTAAATGGAAGCCTATGGTTAAAAGATTAGATCTCCTTGCTCTACTAATTGCACTAAGAAAATATTCTAGCTCTATAAGTTGTTAAATCTTTTTTTTTTTTTTTTTTGATATCCGTGAGTGTCCGGACCAGCTTACGCGCACCTCGACTAATTTCACGGGACAACCCACCCGACCTTACAACAGGCGGGTAATCCTAGGTAGGTGGCTACTATGGATTGAACCCACAACCTTTAAGCCCTTTGACTTTTTTTTAATGTTCCCACTACCACTAGGTCAAATCCATAATGGTTTATAAATTATTAAATCACTACTAAATCTCAGCTCAATGATAATATAGACACAATAAAGGTTCGTATGATTTGTCTATTATACTCTAAAATTACATTAAATCGCCACCTGGATGACATAAAGATGATTAAACCTTGTAGATTAGGATATTGAATGGTAGTGATAGTAACCAATTATTGAAACCGAATAGACTCGGGTATGGATGAGTTGAAATGTGGCATTAAATGAGTTCAATTTTATAAATTAGATTTTGAAGTATTTAAGATTTTTTTTGGTACAACAATTGTGGGATGAGGAATTGAACATTTAACCTCTAGGAACAGAGCGGTGTCAATACCACTGATCTAAGTTCATTTTGGCTTAAGTATTTAAGATTGTGTCTAATGAAATCTCTAATTTTTTCAGAAAAAAAAGATCTCATAAACTTAACTGTGTCTATCTTTGTCCTTTATATTCAAAGTTTGGATTGAATATGTCACACCCGCCCTAGATTATCCTTTCGAACTTAGGACGGGATGTGATGACAGTAGACACCAATGGTGCCTACCGTCAAACTTTTCCTTGAACTTGAAACTTAGTTTGGATTAACTACAATACTTATACGTCCCAACAACTACACTTTTAATAAAACTCAGTACTTGATTACATGTTCCCTTACACTGATAAGTTGGGGGGCAGCTTCTAATAAGCTAATTCTGGTTGAAACTCAAGGGCAACCAGATGGAAAAGTAAATATAAAAGGTTGAGTTAAGAAGCCCAGTGAGTGATGATTTTATTAAAGTATGTTTAAAAAATTTGGACAATTTCTCAATTTGTTCCTTACACAAGGACCATGCTAATCTTCTCTGTATTGTTCCAATTTTATCATATGTCATCCTCATCACATCTTGTCCTAGGTTCAAAAGGTAATCTAGGATAGAATGTGACAAAATACTTCCAAATAGATAAAGGCTTAAAAATTTAGAGACCAAATTTTGGAATATAGTGTTTATATATCAGTTGGGATGGATGTTAATGTCTTTGTTGTTAATCGCAGGCTGAGATAATGCTTCAAAAGTTAGCAGACTTGCACAAAATGGTAAGATAAACCAAGTTTAGTGTTTGTTTGGATTAACTTTCAAAATATTTAAATAAGTGTTTAATAAGTTAAAAAAAAATGTGTTTATAAACACTTAAAAGTCAATTCAAGTAGTGCTTTAATTTACGTACAAAATATGATATCCAAGGGTTATTACACATACTAACTACAGACATATAATGTGTACATTTTCTAGGCATGTTTGTAATATTCTCAATTTTAATTTTTTTTGTTTTTTTTGGAAGAAAATGAAATTGTATTTGATAATTATTTTTTAGACATGTTTTTAAATATAAAAAAATGAGTCAAACTATTTACAAATAGAAAAAAAATTTCCTGTGATAGAATTCTATCGCTTATCGCGGTTTATCGCTGATAGACAGTGAAATTTATTTATATTTGTAAATAATTTGATATTTTTTTTTTAGAGTAATTTTCCAATTTTTTATTATAATTATTTTTGTTTCAATTTTTAAGAAGGAAACTAATATATATATATATTTCTATGTTTCTTTGTTTTCTTTCAAAATTCAAAATAAATAAAGTTTTACATGAAATTTTGTTTGAAAAGTGAAATGGTTAAAATCAATATGTTACATTTATTATTATTATTATTATTTGATATTATGATGCATTTTATAAAGTAAAAAAGAAAAAATGCTTTTAATTATATTGAAAGAAAAAGTTAGAAATAAGAAACTAGAATTTTGGTGTTTTCAACATATAATTATGTAAATGTTTCTTTACAAAAGGAAATACGATTGTCAAGAAGAAATAGATAAGAATCACCAAATGCTTATATATTTTTCAATAATAATAGTAACAAATATTATCAAAACAGACTCATAACTTTGTATTTATCTTCCAAGAAAATTATGAAACAATGTTGCATAGCAATACTTTTATTGTTTTGTATTGATTGTAGTTGAATAATAGTACTTTGTATTATTTTAGTACAGTGTTAAACCTAACATTACTATAGAAAATTCTACTATATTATAAGTTTGAAGAAAAAATGAAATGCATAATCATGCAGAAAAGAGATGAAATCAAAAGTAAATAATATAATGTTTGGATAAATTTATGAATTTATAAGATAATCGTGTGGTGTGATTCAATTGAAATGAAATTAAAGAGTAAGTTTATATGTTTGTTGTTTATTTATTTTTGAGTGAGAAGTGACAAGCATTAGTTTTTTTTTTTTGAGACATACAGGAGCAGGACCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGGTTCTTCTCTCTTCCTTTTTAACCTTCCTCCATCAATATACATGCTTAAATTTTAATTATAATTTTTTTAAAGATATATATATTTATCTTCAACTTACTTTGTATCATTTTAAACTTAATATCATATCTTTTATGTCCATTATTTCTTGGCCAATGAGAACTTTTTCTCTTTTTTTATTCTCCTATGCCTGTAGGTCTTTGGAGTCTGTACCTTATAGTTTTAAGTATTTTCTTAAATATTTTCATTGAAAATCTTTCAACTATGTTTCAAGTCTCTATTCAAAAAGAAATTTTAAATTAATCTAATATTTTAAGGTGCTTAAATTCATCAAGACTTTTTTTCCCAAAACCCTTTAATCGTCTAAAAGCATTCAAATAAAATTATACTATGCTCGTTTTAAACTATTGAATCCTTTTCAAAGTGTTCTGGTTTGAAAAATTGATCTGGTTTGAAAACCATTTTTGTAAAGTGTTCTGGTTTGATGGACAAAATGAATTAATGAGTTGTTAGTGTAAATTTGTTTTCAAATATAGAAAAATGAGTCAAACTATTTACAAATACAGAAATTTTTTACTGTCTATCAGCGACAGACCGCGATAGAATTGTATCGCTGATAGACAGTGAAATTTTTATATACTTATAAATAATAATTTGATTTTTTTTTTATTTATAGTAATTTTCCTCTATGTACTATTAATATTGATCCTTTCATATGTGAACTTAAAAATTCATAGAAAGTTCTTTCTACAAGTGGAAATCTCTATTGGAAATGAAATGACATTGTAAGAGTTTAAACATATGATCTCCTGTTATAATACTGTGTTAAATGACCATGGAACTCAAAAAGGTTTAAGCTAATGGATATTTAACACTTAATAGTATTTTCATAGCAAAAAATATCACATTACACATTTAATTAGTCTCTAAACTTTGAATTTTGTATCTATTTTGGTAAATATTTTTAAAATTATTTATTTAGTCTTTGAACTGATCTCTATTCTTTCTTTTAATTACAAATTTAATAGACACAAAATTGAAAATTTTAGAATTCTACTAAAAATAAAATTCAAACTTACATCTCAGAACAGATAATTTTTAAAAAATTTAAAATTGTCTATTAAATTGAACCCAGTTGCATTGAAGGACGCTCCAGTGTGCTTTAAATAAGGGCACCTTGCTTGGTAGCCCTCACATGTTTCTAGAAAGCATGCTTATAAGCTAGAAGCACTCTTTAAAACACTTTCTATAAAAGTCGTTGAATGAGAGGCATGTAGGCTAGAAATTAGAGAGATAAAGATGTCTAGAGTGAGTGACTTGTTATTTATTCCATAAAGAAAAATGTTAGTCAGAGACATACAAATTAGATAGAAATTGAGCTTGAAATATTAATAATCCGAGACAGATAAAACTAAAAGACTAATAATTAGCTTAAACCCTTCTAATTTGATAAACTACGTAAGATAAATGCAATCAAATTTGTTAAACTTGAGTCTAATTCAATTTAAAGATTTTTTTCCTTATACTAAAATATGAAAGTTTTGAATTTTCCACCCTACATAATTATTGAACTAAAAAAACCATTGAAACTTGAAGTTAGTTCATGATCATGAAATTTAAAATGAATCTAACACAAAAAAAATTCACAAGTCAAACATGATGTTGGAGATAGAGAGACAAAGATTAGTAATTATGTACTATGTAATATAATATTACCTACTTTGGGGGCAGTGTGCCCTATCACAAGAGTTAAATAATTATAACAAAATACTTATTATTAGACTCCCTCTACCGTGACTCATGTACAACTCACTCTTTTAGCTTCAACTTAGACTCCCCTAAGTTTAGATCCCCTAACTTCCACAAAGATGCTTTCGCCCAGCTTTGTTTGAGACCCCATTAAATAGACGTACCTAGGCTTCCCTTAAGTTTGAGCTCCCTTCACCTATATTTATGAAATAGCTTCTCTCAAGCTAAGTATGAGATCCCTTCAATACAAAATAACTTAGCTTTCCCTAAGTGTGTGATACACTCTTTTTCACTTACAGTGAATGATAGTAGTTGTAACCACTTCAGCTTAGTCTAAATGACTATCGACAACACCCTCAACAATGAGGTTTACAAAGTTCACTTAACAGTATATGAAAAGACTTAACGTGAACAATCTCAAAAAAAATATAAGACCACACAATCTTATTCAAATGGGCCAACCCTAAAAGAGATAAAGTCAGACTATATATATGATACAAGCTCGAGAAGATCTTTAAGGACGAAAAATTATAATCTTCTCTGCAAAAGAAAAAAAAGAGGAAAAAAAAGAAAAAGAAAGCATCTCCTCATATCAGCATAGCACGCCGTAATAAATATATATATATATATATTTCCAGACAGATTCTGCGCAACATGAAATAATATGCTTGACATTTCTTAAGACAAAAATCAGCCAATGTGCAGTAATGCATGAGCTGATAATTAGTGAATAATATATAACCAAACAAAAAGTTTTTGGCAACAGCTTGAAGAAGAACAACAATGTATGCAAGAAAAGGAAGGTGGCGAGGAAGATCCAATGAATTACGAGGTTGTTGGAGCTGACCAAAACATGAACACCACCAGGTATTATTTACTTATACGAACAAATATTAAACATAATATATATGTATATGATTCTTTATAATTTGGGAAGTGTTAATTAAGCTATTAATGATTATTAATTAGGTAGCGTAGCCAAAAATGATTTATTTTTGGGTTTGGTGTGTGCGTGTTAATGAAAATGAAAACACACAGGTACTTTGATCCCCAAGAAGAAGAAGGCAGGGCCATGATAGGAGCTGGGAGTAATGACTTAATCCCAGATTGGCTACTTTGATTCACATATCTATATGGATATGCTCCCCTAATTTTTATTTTCTATTATTCTTCACTAATAAGGATCATGATGGGGGAACCTTTCGACATTATATACTATATACATCTTCCTATAATTTAATAAATATGCCTCTTTGCTTTGAA

mRNA sequence

AGATAAGGGATATCGATCATCATGGGAAGGGGAAAAGTAGTGCTTGAGAGAATAGAGAACAAAGTGAATCGTCAAGTTACCTTCTCAAAACGAAGAAATGGGTTATTGAAGAAGGCTTGTGAGCTCTCTGTGCTTTGTGATGTTGATGTTGCTCTTATCATCTTCTCTACTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAAATCCTTGAGAAGTATCACCAGCGATGTTACAGCTCTGGATCAAGCACCAATCTTGATGAGAGTGACATACAGATAGAGGAGGTGTCAAAGCTCAGAGCCAAATATGAATCTCTTCAGCGTTCCCATAGGAACTTTCTTGGAGAAGAACTTGAACCACTGAACCTAAAAGAGTTGCATAATCTTGAGAAGCAGTTGGACAAAACTCTTTCACACGCTAGACAGCGGAAGTGTCCGGACCAGCTTACGCGCACCTCGACTAATTTCACGGGACAACCCACCCGACCTTACAACAGGCGGGAGCAGGACCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGCTTGAAGAAGAACAACAATGTATGCAAGAAAAGGAAGGTGGCGAGGAAGATCCAATGAATTACGAGGTTGTTGGAGCTGACCAAAACATGAACACCACCAGGTACTTTGATCCCCAAGAAGAAGAAGGCAGGGCCATGATAGGAGCTGGGAGTAATGACTTAATCCCAGATTGGCTACTTTGATTCACATATCTATATGGATATGCTCCCCTAATTTTTATTTTCTATTATTCTTCACTAATAAGGATCATGATGGGGGAACCTTTCGACATTATATACTATATACATCTTCCTATAATTTAATAAATATGCCTCTTTGCTTTGAA

Coding sequence (CDS)

ATGGGAAGGGGAAAAGTAGTGCTTGAGAGAATAGAGAACAAAGTGAATCGTCAAGTTACCTTCTCAAAACGAAGAAATGGGTTATTGAAGAAGGCTTGTGAGCTCTCTGTGCTTTGTGATGTTGATGTTGCTCTTATCATCTTCTCTACTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAAATCCTTGAGAAGTATCACCAGCGATGTTACAGCTCTGGATCAAGCACCAATCTTGATGAGAGTGACATACAGATAGAGGAGGTGTCAAAGCTCAGAGCCAAATATGAATCTCTTCAGCGTTCCCATAGGAACTTTCTTGGAGAAGAACTTGAACCACTGAACCTAAAAGAGTTGCATAATCTTGAGAAGCAGTTGGACAAAACTCTTTCACACGCTAGACAGCGGAAGTGTCCGGACCAGCTTACGCGCACCTCGACTAATTTCACGGGACAACCCACCCGACCTTACAACAGGCGGGAGCAGGACCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGCTTGAAGAAGAACAACAATGTATGCAAGAAAAGGAAGGTGGCGAGGAAGATCCAATGAATTACGAGGTTGTTGGAGCTGACCAAAACATGAACACCACCAGGTACTTTGATCCCCAAGAAGAAGAAGGCAGGGCCATGATAGGAGCTGGGAGTAATGACTTAATCCCAGATTGGCTACTTTGA

Protein sequence

MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGSTDMNKILEKYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSKLEEEQQCMQEKEGGEEDPMNYEVVGADQNMNTTRYFDPQEEEGRAMIGAGSNDLIPDWLL

Homology

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BLAST of Lsi05G012800 vs. ExPASy Swiss-Prot
Match: Q8LLR1 (Agamous-like MADS-box protein MADS3 OS=Vitis vinifera OX=29760 GN=MADS3 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.6e-46
Identity = 108/190 (56.84%), Postives = 134/190 (70.53%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+V L+RIENK+NRQVTFSKRRNGLLKKA ELSVLCD +VALIIFS+RGKL+EFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  DMNKILEKYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLK 120
              K LE+Y + CY+   +    E+    +EVSKL+AKYESLQR+ R+ LGE+L PL++K
Sbjct: 61  GTTKTLERYQRVCYTPQDNNMECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSVK 120

Query: 121 ELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSKLEE 180
           EL NLEKQL+  L+ ARQRK         T    +      R+E+ LGD N QLK KLE 
Sbjct: 121 ELQNLEKQLEGALAQARQRK---------TQMMIEQMEDLRRKERQLGDLNKQLKLKLEA 180

Query: 181 EQQCMQEKEG 191
           E Q ++  +G
Sbjct: 181 EGQSLKAIQG 181

[Close]

BLAST of Lsi05G012800 vs. ExPASy Swiss-Prot
Match: Q6EU39 (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS6 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.1e-45
Identity = 105/182 (57.69%), Postives = 130/182 (71.43%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+V L+RIENK+NRQVTFSKRRNGLLKKA ELSVLCD +VALIIFS+RGKL+EFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  DMNKILEKYHQRCYSSGSSTN-LDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNL 120
            + K LE+Y   CY++  S N L E+     E+SKL+AK+E+LQR+ R+ LGE+L PL++
Sbjct: 61  GITKTLERYQHCCYNAQDSNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSV 120

Query: 121 KELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSKLE 180
           KEL  LEKQL+  LS ARQRK         T    +      R+E+ LG+ N QLK KLE
Sbjct: 121 KELQQLEKQLECALSQARQRK---------TQLMMEQVEELRRKERQLGEINRQLKHKLE 173

Query: 181 EE 182
            E
Sbjct: 181 VE 173

[Close]

BLAST of Lsi05G012800 vs. ExPASy Swiss-Prot
Match: Q7XUN2 (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS17 PE=1 SV=2)

HSP 1 Score: 178.3 bits (451), Expect = 1.0e-43
Identity = 109/211 (51.66%), Postives = 144/211 (68.25%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+V L+RIENK+NRQVTFSKRRNGLLKKA ELSVLCD +VALIIFS+RGKL+EFGS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  DMNKILEKYHQRCYSS-GSSTNLDESDIQ--IEEVSKLRAKYESLQRSHRNFLGEELEPL 120
            +NK LEKY+  CY++ GS++ L   + Q   +E+S+L+ K E LQRS R+ LGE+L PL
Sbjct: 61  GINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPL 120

Query: 121 NLKELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSK 180
           ++KEL  LEKQL+ +LS ARQRK         T    +      R+E+ LG+ N QLK+K
Sbjct: 121 SIKELQQLEKQLEYSLSQARQRK---------TQIMMEQVDDLRRKERQLGELNKQLKNK 180

Query: 181 LEEEQQCMQEKEGGEEDPMNYEVVGADQNMN 209
           LE E      +   ++  ++  VV   + +N
Sbjct: 181 LEAEADSSNCRSAIQDSWVHGTVVSGGRVLN 202

[Close]

BLAST of Lsi05G012800 vs. ExPASy Swiss-Prot
Match: P29386 (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana OX=3702 GN=AGL6 PE=1 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 7.9e-41
Identity = 98/183 (53.55%), Postives = 126/183 (68.85%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+V ++RIENK+NRQVTFSKRRNGLLKKA ELSVLCD +VALIIFS+RGKL+EFGS 
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSV 60

Query: 61  DMNKILEKYHQRCYSSGSSTNLDESDIQ--IEEVSKLRAKYESLQRSHRNFLGEELEPLN 120
            +   +E+Y+ RCY+   S N  E   Q   +EV+KL++KYESL R++RN LGE+L  + 
Sbjct: 61  GIESTIERYN-RCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMG 120

Query: 121 LKELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSKL 180
           +KEL  LE+QL+  L+  RQRK         T    +      ++E+ LGD N QLK K 
Sbjct: 121 VKELQALERQLEAALTATRQRK---------TQVMMEEMEDLRKKERQLGDINKQLKIKF 173

Query: 181 EEE 182
           E E
Sbjct: 181 ETE 173

[Close]

BLAST of Lsi05G012800 vs. ExPASy Swiss-Prot
Match: Q39685 (MADS-box protein CMB1 OS=Dianthus caryophyllus OX=3570 GN=CMB1 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-37
Identity = 97/182 (53.30%), Postives = 122/182 (67.03%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+V L+RIENK+NRQVTF+KRRNGLLKKA ELSVLCD +VALI+FS RGKL+EF ST
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61  D-MNKILEKYHQRCYSS-GSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLN 120
             MNK LE+Y +  Y S  +S    E++   +E  KL+AK + LQRSHRN LGE+L  L+
Sbjct: 61  SCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELS 120

Query: 121 LKELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSKL 180
            KEL  LE QLDK+L   R  K    L + +            ++E+ L + N  LK+KL
Sbjct: 121 TKELEQLEHQLDKSLRQIRSIKTQHMLDQLA---------DLQKKEEMLFESNRALKTKL 173

[Close]

BLAST of Lsi05G012800 vs. ExPASy TrEMBL
Match: A0A1S3AY43 (MADS-box transcription factor 17-like OS=Cucumis melo OX=3656 GN=LOC103484028 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 2.1e-89
Identity = 192/246 (78.05%), Postives = 206/246 (83.74%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRGKVVLERIEN+VNRQVTFSKRRNGLLKKA ELSVLCDVDVALIIFSTRGKLFEFGST
Sbjct: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60

Query: 61  DMNKILEKYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLK 120
           DMNKILE+YHQ+CY+SGS+TNLDESDIQIEEVSKLRAKYESLQRS+RNFLGEELEPL+LK
Sbjct: 61  DMNKILERYHQQCYTSGSTTNLDESDIQIEEVSKLRAKYESLQRSYRNFLGEELEPLSLK 120

Query: 121 ELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSKLE- 180
           ELHNLEKQLDKTLS ARQRK    L         Q     ++ EQDLGDQN QLKSKLE 
Sbjct: 121 ELHNLEKQLDKTLSQARQRKAEIML---------QKLADLHKMEQDLGDQNNQLKSKLEK 180

Query: 181 -EEQQCMQEKEGGEEDPMNYEVVGADQ-NM-NTTRYFDPQEEEG-----RAMIGAGSNDL 238
            ++QQC+QE+EGGEEDP NYEVV AD  NM NTTRYF+ QEEE      R MI  GSN L
Sbjct: 181 DQDQQCVQEQEGGEEDPKNYEVVRADDPNMVNTTRYFEAQEEEEEEEECRGMIDGGSN-L 236

[Close]

BLAST of Lsi05G012800 vs. ExPASy TrEMBL
Match: A0A6J1CJS1 (MADS-box transcription factor 6-like OS=Momordica charantia OX=3673 GN=LOC111011649 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 2.0e-79
Identity = 169/231 (73.16%), Postives = 187/231 (80.95%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRGKVVLERIENKVNRQVTFSKRRNGLLKKA ELSVLCDVDVALIIF +RGKLFEF ST
Sbjct: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKAYELSVLCDVDVALIIFYSRGKLFEFSST 60

Query: 61  DMNKILEKYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLK 120
           DMNKILE+YHQRCYSSGS++NLDESD+QIEEVSKLRAKYESLQRSHRNFLGEELEPLNLK
Sbjct: 61  DMNKILERYHQRCYSSGSTSNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLK 120

Query: 121 ELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSKLEE 180
           ELHNLEKQLDKTLS ARQRK    L R +            + EQDLGDQNT+LKSKLEE
Sbjct: 121 ELHNLEKQLDKTLSQARQRKAEIMLQRLA---------ELRKMEQDLGDQNTELKSKLEE 180

Query: 181 EQQCMQEKEGGEEDP----MNYEVVGADQNMNTTRYFDPQEEEGRAMIGAG 228
            Q+ +Q+ E G+ DP     NYEVVG + NM++  +   +EEE RA +  G
Sbjct: 181 GQRRLQQSEDGQGDPEEQVPNYEVVGEEPNMSSRCFDVQEEEEARAAMAGG 222

[Close]

BLAST of Lsi05G012800 vs. ExPASy TrEMBL
Match: A0A5D3DF02 (MADS-box transcription factor 17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold440G00130 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 2.4e-64
Identity = 131/140 (93.57%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRGKVVLERIEN+VNRQVTFSKRRNGLLKKA ELSVLCDVDVALIIFSTRGKLFEFGST
Sbjct: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60

Query: 61  DMNKILEKYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLK 120
           DMNKILE+YHQ+CY+SGS+TNLDESDIQIEEVSKLRAKYESLQRS+RNFLGEELEPL+LK
Sbjct: 61  DMNKILERYHQQCYTSGSTTNLDESDIQIEEVSKLRAKYESLQRSYRNFLGEELEPLSLK 120

Query: 121 ELHNLEKQLDKTLSHARQRK 141
           ELHNLEKQLDKTLS ARQRK
Sbjct: 121 ELHNLEKQLDKTLSQARQRK 140

[Close]

BLAST of Lsi05G012800 vs. ExPASy TrEMBL
Match: A0A6J1E935 (MADS-box transcription factor 6-like OS=Cucurbita moschata OX=3662 GN=LOC111430519 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 9.0e-64
Identity = 138/202 (68.32%), Postives = 161/202 (79.70%), Query Frame = 0


Query: 2   GRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGSTD 61
           G+GKVV+ERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALI+FS+RGKLFEFGSTD
Sbjct: 15  GKGKVVVERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIMFSSRGKLFEFGSTD 74

Query: 62  MNKILEKYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKE 121
           MNKILE+YH RCY++GS+TNL  + +QIEEVSKLRAKYESLQRSHRN +GEELE L++KE
Sbjct: 75  MNKILERYHHRCYNTGSTTNLHHTHVQIEEVSKLRAKYESLQRSHRNLVGEELEALSIKE 134

Query: 122 LHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSKLEEE 181
           LH LEKQLDKTLS  R RK    L + +            + EQ+LGD NTQLKSK+ E 
Sbjct: 135 LHTLEKQLDKTLSQTRHRKVEIMLQKIADT---------RKMEQELGDVNTQLKSKV-EG 194

Query: 182 QQCMQEKEGGEEDPMNYEVVGA 204
           Q+CMQ+ E  EE+     + G+
Sbjct: 195 QECMQQNEEQEEEEEGAMLAGS 206

[Close]

BLAST of Lsi05G012800 vs. ExPASy TrEMBL
Match: A0A2I4FGK2 (agamous-like MADS-box protein MADS3 isoform X1 OS=Juglans regia OX=51240 GN=LOC108998622 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.2e-52
Identity = 124/210 (59.05%), Postives = 150/210 (71.43%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+VVLERIENK+NRQVTFSKRRNGLLKKA ELSVLCD +VALIIFS+RGKLF+FGST
Sbjct: 1   MGRGRVVLERIENKINRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSSRGKLFQFGST 60

Query: 61  DMNKILEKYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLK 120
           +MNKILE+Y Q CYS  +      +     E+++LRAKYESLQRS R+ LGE+LEPLNLK
Sbjct: 61  EMNKILERYRQCCYSQDTDVVEQGTQTLYREITRLRAKYESLQRSQRHMLGEDLEPLNLK 120

Query: 121 ELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSKLEE 180
           EL NLEKQLDKTLS ARQRK    L R              ++E+ LG+ N QLKSK+EE
Sbjct: 121 ELQNLEKQLDKTLSRARQRKTQIMLDR---------LEELRQKERCLGEMNKQLKSKIEE 180

Query: 181 EQQCMQEKEGGEEDPMNYEVVGADQNMNTT 211
           + Q + E   G  +P     V   + ++T+
Sbjct: 181 KGQRVHEAIQGPGNPTTQAPVDCFEQLHTS 201

[Close]

BLAST of Lsi05G012800 vs. NCBI nr
Match: XP_038886448.1 (agamous-like MADS-box protein MADS3 [Benincasa hispida])

HSP 1 Score: 383.3 bits (983), Expect = 1.6e-102
Identity = 201/237 (84.81%), Postives = 210/237 (88.61%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFS+RGKLFEFGST
Sbjct: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSSRGKLFEFGST 60

Query: 61  DMNKILEKYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLK 120
           DMNKILE+YHQRCYSSGSSTNLDESDIQIEEV+KLRAKYESL+RS+RNFLGEELEPLNLK
Sbjct: 61  DMNKILERYHQRCYSSGSSTNLDESDIQIEEVAKLRAKYESLRRSNRNFLGEELEPLNLK 120

Query: 121 ELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSKLEE 180
           ELHNLEKQLDKTLSH RQRK    L         Q      + EQDLGDQNTQLKSKLEE
Sbjct: 121 ELHNLEKQLDKTLSHTRQRKAEIML---------QKLADLRKMEQDLGDQNTQLKSKLEE 180

Query: 181 EQQCMQEKEGGEEDPMNYEVVGADQNMNTTRYFDPQEEEGRAMIGAGSNDLIPDWLL 238
           EQQCMQEKE GEEDPMNY++VGAD NMN  RYFDPQEEEGR MI AG+NDLIPDWLL
Sbjct: 181 EQQCMQEKEDGEEDPMNYKLVGADPNMNIPRYFDPQEEEGRGMIEAGNNDLIPDWLL 228

[Close]

BLAST of Lsi05G012800 vs. NCBI nr
Match: XP_008439145.1 (PREDICTED: MADS-box transcription factor 17-like [Cucumis melo])

HSP 1 Score: 338.6 bits (867), Expect = 4.4e-89
Identity = 192/246 (78.05%), Postives = 206/246 (83.74%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRGKVVLERIEN+VNRQVTFSKRRNGLLKKA ELSVLCDVDVALIIFSTRGKLFEFGST
Sbjct: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60

Query: 61  DMNKILEKYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLK 120
           DMNKILE+YHQ+CY+SGS+TNLDESDIQIEEVSKLRAKYESLQRS+RNFLGEELEPL+LK
Sbjct: 61  DMNKILERYHQQCYTSGSTTNLDESDIQIEEVSKLRAKYESLQRSYRNFLGEELEPLSLK 120

Query: 121 ELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSKLE- 180
           ELHNLEKQLDKTLS ARQRK    L         Q     ++ EQDLGDQN QLKSKLE 
Sbjct: 121 ELHNLEKQLDKTLSQARQRKAEIML---------QKLADLHKMEQDLGDQNNQLKSKLEK 180

Query: 181 -EEQQCMQEKEGGEEDPMNYEVVGADQ-NM-NTTRYFDPQEEEG-----RAMIGAGSNDL 238
            ++QQC+QE+EGGEEDP NYEVV AD  NM NTTRYF+ QEEE      R MI  GSN L
Sbjct: 181 DQDQQCVQEQEGGEEDPKNYEVVRADDPNMVNTTRYFEAQEEEEEEEECRGMIDGGSN-L 236

[Close]

BLAST of Lsi05G012800 vs. NCBI nr
Match: XP_011651126.1 (agamous-like MADS-box protein MADS3 [Cucumis sativus] >KAE8650443.1 hypothetical protein Csa_009943 [Cucumis sativus])

HSP 1 Score: 332.0 bits (850), Expect = 4.1e-87
Identity = 188/241 (78.01%), Postives = 201/241 (83.40%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRGKVVLERIEN+VNRQVTFSKRRNGLLKKA ELSVLCDVDVALIIFSTRGKLFEFGST
Sbjct: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60

Query: 61  DMNKILEKYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLK 120
           DMNKILE+YHQ+CY+SGS+TNLDESD+QIEEVSKLRAKYESLQRSHRNFLGEELEPL LK
Sbjct: 61  DMNKILERYHQQCYTSGSTTNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLTLK 120

Query: 121 ELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSKLEE 180
           ELHNLEKQLDKTLS ARQRK    L         Q      + EQDLGDQNTQLKSKLE+
Sbjct: 121 ELHNLEKQLDKTLSQARQRKAEIML---------QKLADLRKMEQDLGDQNTQLKSKLEK 180

Query: 181 EQQCMQEKEGGEEDPMNYEVVGADQ-NM-NTTRYFDPQEEEG--RAMIGAGSNDLIPDWL 238
           +    QE+EGGEEDP NYEVV AD  NM NTTRY++ QEEE   R +I  GSN LIPDWL
Sbjct: 181 D----QEQEGGEEDPKNYEVVRADDPNMINTTRYYEAQEEEEECRGVIDGGSN-LIPDWL 227

[Close]

BLAST of Lsi05G012800 vs. NCBI nr
Match: XP_022141193.1 (MADS-box transcription factor 6-like [Momordica charantia])

HSP 1 Score: 305.4 bits (781), Expect = 4.1e-79
Identity = 169/231 (73.16%), Postives = 187/231 (80.95%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRGKVVLERIENKVNRQVTFSKRRNGLLKKA ELSVLCDVDVALIIF +RGKLFEF ST
Sbjct: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKAYELSVLCDVDVALIIFYSRGKLFEFSST 60

Query: 61  DMNKILEKYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLK 120
           DMNKILE+YHQRCYSSGS++NLDESD+QIEEVSKLRAKYESLQRSHRNFLGEELEPLNLK
Sbjct: 61  DMNKILERYHQRCYSSGSTSNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLK 120

Query: 121 ELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSKLEE 180
           ELHNLEKQLDKTLS ARQRK    L R +            + EQDLGDQNT+LKSKLEE
Sbjct: 121 ELHNLEKQLDKTLSQARQRKAEIMLQRLA---------ELRKMEQDLGDQNTELKSKLEE 180

Query: 181 EQQCMQEKEGGEEDP----MNYEVVGADQNMNTTRYFDPQEEEGRAMIGAG 228
            Q+ +Q+ E G+ DP     NYEVVG + NM++  +   +EEE RA +  G
Sbjct: 181 GQRRLQQSEDGQGDPEEQVPNYEVVGEEPNMSSRCFDVQEEEEARAAMAGG 222

[Close]

BLAST of Lsi05G012800 vs. NCBI nr
Match: KAA0033595.1 (MADS-box transcription factor 17-like [Cucumis melo var. makuwa] >TYK22261.1 MADS-box transcription factor 17-like [Cucumis melo var. makuwa])

HSP 1 Score: 255.4 bits (651), Expect = 4.9e-64
Identity = 131/140 (93.57%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRGKVVLERIEN+VNRQVTFSKRRNGLLKKA ELSVLCDVDVALIIFSTRGKLFEFGST
Sbjct: 1   MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGST 60

Query: 61  DMNKILEKYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLK 120
           DMNKILE+YHQ+CY+SGS+TNLDESDIQIEEVSKLRAKYESLQRS+RNFLGEELEPL+LK
Sbjct: 61  DMNKILERYHQQCYTSGSTTNLDESDIQIEEVSKLRAKYESLQRSYRNFLGEELEPLSLK 120

Query: 121 ELHNLEKQLDKTLSHARQRK 141
           ELHNLEKQLDKTLS ARQRK
Sbjct: 121 ELHNLEKQLDKTLSQARQRK 140

[Close]

BLAST of Lsi05G012800 vs. TAIR 10
Match: AT2G45650.1 (AGAMOUS-like 6 )

HSP 1 Score: 168.7 bits (426), Expect = 5.6e-42
Identity = 98/183 (53.55%), Postives = 126/183 (68.85%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+V ++RIENK+NRQVTFSKRRNGLLKKA ELSVLCD +VALIIFS+RGKL+EFGS 
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSV 60

Query: 61  DMNKILEKYHQRCYSSGSSTNLDESDIQ--IEEVSKLRAKYESLQRSHRNFLGEELEPLN 120
            +   +E+Y+ RCY+   S N  E   Q   +EV+KL++KYESL R++RN LGE+L  + 
Sbjct: 61  GIESTIERYN-RCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMG 120

Query: 121 LKELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSKL 180
           +KEL  LE+QL+  L+  RQRK         T    +      ++E+ LGD N QLK K 
Sbjct: 121 VKELQALERQLEAALTATRQRK---------TQVMMEEMEDLRKKERQLGDINKQLKIKF 173

Query: 181 EEE 182
           E E
Sbjct: 181 ETE 173

[Close]

BLAST of Lsi05G012800 vs. TAIR 10
Match: AT1G26310.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-37
Identity = 89/194 (45.88%), Postives = 132/194 (68.04%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+V L+RIENK+NRQVTFSKRR GLLKKA E+SVLCD +V+LI+FS +GKLFE+ S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSE 60

Query: 61  D-MNKILEKYHQRCYSS----GSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELE 120
             M K+LE+Y +  Y+        ++++       E S+L+AK E L+R+ R++LGEELE
Sbjct: 61  SCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELE 120

Query: 121 PLNLKELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLK 180
           P++LK+L NLE+QL+  L H R RK  +QL   S N          R+E+++ ++N+ L 
Sbjct: 121 PMSLKDLQNLEQQLETALKHIRSRK--NQLMNESLNH-------LQRKEKEIQEENSMLT 180

Query: 181 SKLEEEQQCMQEKE 190
            +++E +  ++ K+
Sbjct: 181 KQIKERENILRTKQ 185

[Close]

BLAST of Lsi05G012800 vs. TAIR 10
Match: AT3G61120.1 (AGAMOUS-like 13 )

HSP 1 Score: 152.5 bits (384), Expect = 4.2e-37
Identity = 85/180 (47.22%), Postives = 125/180 (69.44%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRGKV ++RIENK+ RQVTFSKR++GLLKKA ELSVLCD +V+LIIFST GKL+EF + 
Sbjct: 1   MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNV 60

Query: 61  DMNKILEKYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLK 120
            + + +E+Y++   +   +  L+++    +EV+KL+ KYESL R+HRN +GE+LE +++K
Sbjct: 61  GVGRTIERYYRCKDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIK 120

Query: 121 ELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSKLEE 180
           EL  LE+QL+  LS  R++K         T    +      R+E++LGD N +LK + E+
Sbjct: 121 ELQTLERQLEGALSATRKQK---------TQVMMEQMEELRRKERELGDINNKLKLETED 171

[Close]

BLAST of Lsi05G012800 vs. TAIR 10
Match: AT5G60910.1 (AGAMOUS-like 8 )

HSP 1 Score: 151.4 bits (381), Expect = 9.3e-37
Identity = 104/245 (42.45%), Postives = 145/245 (59.18%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGST 60
           MGRG+V L+RIENK+NRQVTFSKRR+GLLKKA E+SVLCD +VALI+FS++GKLFE+ ST
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEY-ST 60

Query: 61  D--MNKILEKYHQRCYSSGSSTNLD--ESDIQIEEVSKLRAKYESLQRSHRNFLGEELEP 120
           D  M +ILE+Y +  YS       D  +S+  + E +KL+A+ E L+++ RNF+GE+L+ 
Sbjct: 61  DSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDS 120

Query: 121 LNLKELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKS 180
           L+LKEL +LE QLD  +   R RK        S            ++++ L D N  L  
Sbjct: 121 LSLKELQSLEHQLDAAIKSIRSRKNQAMFESISA---------LQKKDKALQDHNNSLLK 180

Query: 181 KLEEEQQCMQEKEGGEEDPMNYEVVGADQNMNTTRYFDPQEEEGRAMIGAGS----NDLI 238
           K++E ++   ++EG      N   V   Q   T+      E  G    GA S    N L+
Sbjct: 181 KIKEREKKTGQQEGQLVQCSNSSSVLLPQYCVTSSRDGFVERVGGENGGASSLTEPNSLL 235

[Close]

BLAST of Lsi05G012800 vs. TAIR 10
Match: AT5G15800.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 149.1 bits (375), Expect = 4.6e-36
Identity = 92/183 (50.27%), Postives = 117/183 (63.93%), Query Frame = 0


Query: 1   MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEF-GS 60
           MGRG+V L+RIENK+NRQVTF+KRRNGLLKKA ELSVLCD +VALIIFS RGKL+EF  S
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  TDMNKILEKYHQRCYSSGSSTNLDESDIQ--IEEVSKLRAKYESLQRSHRNFLGEELEPL 120
           ++M K L++Y +  Y S    N    +++    E  KL+ +YE+LQR  RN LGE+L PL
Sbjct: 61  SNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 121 NLKELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSK 180
           N KEL  LE+QLD +L   R  K    L + S             +EQ L + N  L  K
Sbjct: 121 NSKELEQLERQLDGSLKQVRSIKTQYMLDQLS---------DLQNKEQMLLETNRALAMK 174

The following BLAST results are available for this feature:

BLAST of Lsi05G012800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LLR1	1.6e-46	56.84	Agamous-like MADS-box protein MADS3 OS=Vitis vinifera OX=29760 GN=MADS3 PE=2 SV=...	[more]
Q6EU39	3.1e-45	57.69	MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS...	[more]
Q7XUN2	1.0e-43	51.66	MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
P29386	7.9e-41	53.55	Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana OX=3702 GN=AGL6 PE=1 ...	[more]
Q39685	1.1e-37	53.30	MADS-box protein CMB1 OS=Dianthus caryophyllus OX=3570 GN=CMB1 PE=2 SV=1	[more]

BLAST of Lsi05G012800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AY43	2.1e-89	78.05	MADS-box transcription factor 17-like OS=Cucumis melo OX=3656 GN=LOC103484028 PE...	[more]
A0A6J1CJS1	2.0e-79	73.16	MADS-box transcription factor 6-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A5D3DF02	2.4e-64	93.57	MADS-box transcription factor 17-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1E935	9.0e-64	68.32	MADS-box transcription factor 6-like OS=Cucurbita moschata OX=3662 GN=LOC1114305...	[more]
A0A2I4FGK2	1.2e-52	59.05	agamous-like MADS-box protein MADS3 isoform X1 OS=Juglans regia OX=51240 GN=LOC1...	[more]

BLAST of Lsi05G012800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886448.1	1.6e-102	84.81	agamous-like MADS-box protein MADS3 [Benincasa hispida]	[more]
XP_008439145.1	4.4e-89	78.05	PREDICTED: MADS-box transcription factor 17-like [Cucumis melo]	[more]
XP_011651126.1	4.1e-87	78.01	agamous-like MADS-box protein MADS3 [Cucumis sativus] >KAE8650443.1 hypothetical...	[more]
XP_022141193.1	4.1e-79	73.16	MADS-box transcription factor 6-like [Momordica charantia]	[more]
KAA0033595.1	4.9e-64	93.57	MADS-box transcription factor 17-like [Cucumis melo var. makuwa] >TYK22261.1 MAD...	[more]

BLAST of Lsi05G012800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45650.1	5.6e-42	53.55	AGAMOUS-like 6	[more]
AT1G26310.1	1.9e-37	45.88	K-box region and MADS-box transcription factor family protein	[more]
AT3G61120.1	4.2e-37	47.22	AGAMOUS-like 13	[more]
AT5G60910.1	9.3e-37	42.45	AGAMOUS-like 8	[more]
AT5G15800.1	4.6e-36	50.27	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 119..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..196
None	No IPR available	PANTHER	PTHR48019:SF70	TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1	coord: 1..198
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 1..198
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 82.84 coord: 3..23 score: 65.94 coord: 38..59 score: 59.69
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 2.6E-37 score: 140.0
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 1.1E-25 score: 88.8
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 30.697649
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..91 e-value: 2.1E-28 score: 100.2
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..85
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 89..178 e-value: 9.5E-20 score: 70.6
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 85..184 score: 11.643907
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 2..78 e-value: 3.05779E-43 score: 138.839

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G012800.1	Lsi05G012800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding