Lsi05G012110 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G012110
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	sec-independent protein translocase protein TATB, chloroplastic
Location	chr05: 19943298 .. 19948720 (-)
RNA-Seq Expression	Lsi05G012110
Synteny	Lsi05G012110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAACCCTGAAGGCTATGCCGAATCAGAAGTGCTGAAGCTTTGTCCAAATTAGCGACTATCTGTTTGCTGGGTCTCCCCCGGTTCATGGTCGTTCTCCAAATCATGGCCTCCAAATTTTCAGTTTCCACATTCCCATTTTCCCCTTCTTCCTCATCTGCTTGCTCAAGACTTGCAGCTTCCACTTCCTCTTCCTCTTCCATCTTATACCCCACAACCCCCAAAATTCGTCTCTCCTTGTGTAATTTCCCACTGGGTCTCGGCCTTTTCTCTCCATGGAGTGGTTTAAAGCATTTGGGTATTTCTACCAGAGGAAAGTTTCCCGGTATGGATATACTTTTTGATGATATAAGATTCATTTACTTTTTCATATTTGTCTGACTTGTGTGTTTATTGACCTTTTTTCCCTTTTTTCATATTCTCTAAAATGGTGTTGTTGCAGAGAGAAGAAAGAGAATTCCTAAGGGGAAAGCAGTTTTTGCATCTTTGTTTGGGGTTGGAGCTCCCGAGGCACTGGTTATTGGGGTAGTGGCTCTGTTAGTTTTTGGTCCCAAGGGTCTTGCTGAGGTTAGTTATATAAATCATGTAGATGACTGAAATTTTGGAGATATTTGGCTGCTTCAGATGTGCTTATCAATGTTCAGTTCGTGCTGAATCTGAACATTGATTGAAGTATTCTGTCAATGTTTTACTGGATGAATAATCGTCAAGAACCTTGTCGATTTTCTTGTTAGATGTTTTCTTGATGATGGGAAAAGGTAATCCGTTGTGAATTATGTTCAGAAATTAGATTTAATCTCGTTTAAGGTATTCTGTAAGGTTTTGGTGTTGGTGCTGTTGACCAAAGTTTGAGTTAGCAACATGAAACTTCACTTACCTTAATACTCTAGTCTTTATTGTCTTCAGCCACTGTGGAGGAATAAGTAGTGTTGATGCCAAAATCAACTTTGCTGGGCTCGGCCTGGCCAGGCCAAGCTACTTGGCCTAAGTCAACTCTTCTATTTAGGTCCACTCCAGCCTGGGGTATCGTCGATGGCCCTGTTTCTTTTTTTTTTTCTTTTTTTTTTATAAGCTTTGTTGCTTCCATTCATGTGCTACGTCGATTATGCTCTTTGGTCCAAAATCACAGTATGTTGTATTATTGTTGATGACAAGAAGGATAGCTTCCTAACTATAAGACATTTGATCATTATTGTGTGTATGATAAAGTGTGTTAGGGGAAATCCCATGTATTGGATGCACCCTTATGACTAGTCTGTAATGTGTAATCACCATGGGCTAGCCTAGTGATGCGAGAGCTATCAGAAATAGTAAATGATTTAGAACTTAGAGGTATTGAGTTTTTTTTCCATCTACCTTTCAGAGAGAAAGGTCGTTTTTTGTGGTTTATCGGGGTGTGTGTTTTGTTATGGAATCTTTGGGAGAAAAACAATAGTGTGTTTAGAGGTGTGGAGAGGGACCCTAATGAGATTTTGTCCTTAGTGAGGTTTCATGTTTCTCTTCAGGCTTCGATTTCGAATATTTTTTGTAATTACTCTCTAGGCAACATTTTATTTAGCTAGACCCCCTTTCTTTATTGGGGTCTTGGCGGGCTCATTTTTTTGTATGCCCCTATACTCCTTCATTGAGATTTTTTCTCAATGAAGTCCTGGTGGCTACCTACCTAGGATTTAATATTCTATGATTTTGGCTACCAAATGTAGTAGGGTCAAGAAGTTGTCTTGTGAGAATAATTGAGGTGTGCCTCTAGTCCGAACACTTGTAGATATTAAAAAAAGAAAGAAAGAAAGAAAGAAAAAGTAACTTAAGGGGCATGAATCTAAGTATATAGAAACTCCTTAGGAAGAGAAGAATTGTGCTCATGTTTTGGTAACTTTAGAATTAGGGAGTGATAAGGAACTCCTAGAATTTTCCTTAGTTTGCACTTCTCTGAAAGGATTCTATCAGTTATAACTTAATATCACGATGTCATATTTGAAGTGCTGAGAAATGAGATAACTGCCTTTGTCTCTTCTGTGGTAAAATAGTGGGTGGTAAATGTTTTATAAAGACTTTCTTGTGATGCTGATAGTGATTATATTTTCTATTTCTTCATATCTCTTTCATTGTTCTTTTTGAAATTGAATCATTCTCAGCTTCTATCATGCTTTACTTGAAAACAAACACTAATGATACTTGATATGATTTTAAACATCTTGGTTATTAGAATGGAGTATCTGTTTATTTCTTTTCCGAGGGTCTTGTCCAGGTGGAACTACACAACCAAAAAGTGAAGGCATAGGCTGCCTCATAGGTTTTCTCTGTGCTGCACACTTGTTTTAAAAAACCTCATTATCAATGGTTCTCTGTGAGTATTGACTTGTAAGGGAGATCAGAAAGAATTGTGCTGTTCCCTTGAAGCTATGAAGGATAAGCTAATGAATTCAGAGTCGTTCTGAGTTATGCGGAATTATATTTGAAATCTCATCTTTGTATTAAGTAATGCAAGTATATAAATGAAATGAAGCATCTTGAAAGGTTCCTCCTAACTATCATGGATTGGCTAAGTGGTAAAAAAGGCCCATGAGTTTAATAAAGGACGAAGAGGGAATAGGTTCAATCCATGATAACCACTTACCTAGAATTTAATATCCTACTAGCTTACGTGCACCTCGACTAATCTCACAGGACAACCTGTCTAACTCTACAACATTTGAGTGTCAAGGAAACCTAAAGGATATTAAATCCTAGGTAGGTGGCTACCATGGATTGAACTCATGACCCCTTAGCCTTTTAGCCTTTTTTCTTATGTTCCCACTACCACTAGGCCAACTCATGATGGTTTACGATGTAGAGTACTCAAAATAGCTCATTTATGTTTCCTGATATGAGGCTTGTAAAAAGGTAAGAGTAACTTTTAATATTGAGACTGAAACCATTTGAAATGAGGAGATTGATATGTTAATGTTATTCAGTAATCTTTTGTTATAAATAGAAATGGGCAGTCTTAAATGAACGCATGTTAGTGAAGAATTAGGGTAGCCTTGGGTCCTTAACCCCATCTCATTGTAAAAAAAATTATAATCCAGTAATATATCCATGGTATTGGGGTGCAATGTAAACTTAGGAGATTATGCTTTCCACTTGGATGCTGGAACTCAAGAACTTGAGAAACTTCCCTAAAACGTTCCAAACCTTCACCAGGGCTGCTCCTTGGCGGCAAAGCTAATGATTTGAGAATGCAATTATATAAGACAATAGTTTTGGAACTTCTCTTGATGCCTCTATCTCCTAGTCTAAGATGAAGCTGCACAGATTATGGGTGAAAGGCTAATGGAAAATCCTTTGTTTTTTTTTTGGTGTTTTATACTTCTTGATTTTAATAATCTGAGCTTTGACCTCTGTGGCAATCAAATATGTTTAGGGAAAATTCATGTTACAAAAAAAAAAACCTCACAGTCGGTTTCCTAGGTTGCTTACGATATTCTTAACTTTGGATGGAGAATGCTCTGGTTTCATAGTTTAGGTTTGGTAGAATGGAATGCTAGGATTGATTTTGATTTGCTCTTCTGACTGTTAAGATCAAAGGAATATTGTTGCTCATCTGGAAGTCGGCAGCATTATGTGCTTGAAGACCTATAGAGTATGGATGGTGAATGGTCAAATTTAACGAATCTTGTCTGCTGGCTTTGCAGTCCAAACAGGTTGTCTGTCACTAACTTTCTTTTCTCATTTTCAACCAATTAGGATCTCTTTTTGTAAACTTCCATGGTATTGGCTGGAGAAGACGACAAATCCTTCTTGAAATCTTGACATTTAATCAAAATATATATAGCCTTTGCCTGAGTGAAATTCTAAAAATATTCTCTTCAGAGGCCTCCAGGAATTTGAAACGTTAGGAAGAACAAATCTTGTTCTAGTAAGGTCATCCATTGAACTTGGAACTGGATTCCAAAATAGATCATCTAGAAAATAAAAGGGAATCTGTTTTTGATTGAGAGCATCTAGGACTTTGCATCCAGATAAAAAAACTTGACATTACATTGATTACCAAGTATAACAAAAGACCTGAAACCATTTGGGCAGGTTTTTGTTAAATTATTTAGAAGATTTAACTTAAAAGATATTAAAAAGTATTTTCGTTGGACTTGAATTTAGTTGACTTAACTTATTTATATGCAGGTTGCTCGGACTCTGGGGAAGACCTTACGTGCATTTCAACCCACTATAAAAGAACTTCAGGTAGTTATATTTCGGTTGAGATTTTCCAGTATAATTTCTTGGAGACCTTCTTGTTGTAGTTTTTTGTTCTTCATTTATGTCTGTAGGACGTTTCTAGAGAATTCAAGACCACGCTTGAGCGAGAAATTGGTCTCGATGAAATCTCGAGTTCAGTCAACAGCTCATACAATTCAAGCAAATCAAATACCTACTCAGACCCACCTTCTGTTCCTAAAGCAGAAGAGTCTGTTGCAGTAGCTGAACCAAGTGAGTGATTAAGTTATTTATCATCCATATTCTTATTATTAGTAGTACTTGTATTCTAGGGAAAGATTTCAAAGCTACATAGAAAAAGTCGAATGCCAAATGGGAATAAAATATTAGTAAGCAGCCTTATTTTTTTAAAACAGAAAACAAAAAACGAAATTATTGTCAAACCAAGCCAGATCGAGAGCGTGAAATAGATTTGGTTAGCTGTCGGGCATCGTGTCTACGAATGTTATGCACAAGACAATCAGTAGGGTTATAGAATCATCATTCTGGCAGCCTCAATTATGATACAATTATGAAAGATCGTTTTCTTATGTATATAAACAGCAGATGATTCTTCATCAGAAAGCAAAGCATATACCTCTGAAGAGTACCTAAAGGTTACAGAAGAGCAGCTGAAAGCTCAAGATCAGCTCCAAACCAATTTTGCAGCAGAAAGCCAGAGTGGATCCCAAGTACAGCCTGAAGGTTGCTAAAACCAAATCTCTAAGGAAACTTAGTTTTTAAAAATAAAAAAACCAAATGGTTATGAGCGGGATCTTCACTCTCTCCCCTTATCACTCTGACACATATGACCTTGTAACAGGAACTGTCGAAGAACCTACCACGGCAGCTCCTGGACTCCAAAATCTTGGAACAGGTAAAGTTGAGGAATCAACTGCCTCAGCTCCCGGACCTCCTGGAACTGAGACGTAAAGTTATTAGAATCAATTTTGGATCGAGAATTATTTGTTGTTTCATCTATTGATTGGATGTGATACAACATGTTCTTTAGGTGGCCAATTTAGAAAATATGTGTTTAGTGTTTGAACCTCATGTGAGAGAAGTGATTTTATCAGTGTCTTGGAACGTAATCAGTTTATAGGCATTGGGTAAGATGATTTTGTTGGATTACTAATTAGAATTCCTTCCACATTTCATATAATATCTTCCATGGATTTTGATTAAT

mRNA sequence

AAAAAAAAAACCCTGAAGGCTATGCCGAATCAGAAGTGCTGAAGCTTTGTCCAAATTAGCGACTATCTGTTTGCTGGGTCTCCCCCGGTTCATGGTCGTTCTCCAAATCATGGCCTCCAAATTTTCAGTTTCCACATTCCCATTTTCCCCTTCTTCCTCATCTGCTTGCTCAAGACTTGCAGCTTCCACTTCCTCTTCCTCTTCCATCTTATACCCCACAACCCCCAAAATTCGTCTCTCCTTGTGTAATTTCCCACTGGGTCTCGGCCTTTTCTCTCCATGGAGTGGTTTAAAGCATTTGGGTATTTCTACCAGAGGAAAGTTTCCCGAGAGAAGAAAGAGAATTCCTAAGGGGAAAGCAGTTTTTGCATCTTTGTTTGGGGTTGGAGCTCCCGAGGCACTGGTTATTGGGGTAGTGGCTCTGTTAGTTTTTGGTCCCAAGGGTCTTGCTGAGGTTGCTCGGACTCTGGGGAAGACCTTACGTGCATTTCAACCCACTATAAAAGAACTTCAGGACGTTTCTAGAGAATTCAAGACCACGCTTGAGCGAGAAATTGGTCTCGATGAAATCTCGAGTTCAGTCAACAGCTCATACAATTCAAGCAAATCAAATACCTACTCAGACCCACCTTCTGTTCCTAAAGCAGAAGAGTCTGTTGCAGTAGCTGAACCAAATGATTCTTCATCAGAAAGCAAAGCATATACCTCTGAAGAGTACCTAAAGGTTACAGAAGAGCAGCTGAAAGCTCAAGATCAGCTCCAAACCAATTTTGCAGCAGAAAGCCAGAGTGGATCCCAAGTACAGCCTGAAGGTTGCTAAAACCAAATCTCTAAGGAAACTTAGTTTTTAAAAATAAAAAAACCAAATGGTTATGAGCGGGATCTTCACTCTCTCCCCTTATCACTCTGACACATATGACCTTGTAACAGGAACTGTCGAAGAACCTACCACGGCAGCTCCTGGACTCCAAAATCTTGGAACAGGTAAAGTTGAGGAATCAACTGCCTCAGCTCCCGGACCTCCTGGAACTGAGACGTAAAGTTATTAGAATCAATTTTGGATCGAGAATTATTTGTTGTTTCATCTATTGATTGGATGTGATACAACATGTTCTTTAGGTGGCCAATTTAGAAAATATGTGTTTAGTGTTTGAACCTCATGTGAGAGAAGTGATTTTATCAGTGTCTTGGAACGTAATCAGTTTATAGGCATTGGGTAAGATGATTTTGTTGGATTACTAATTAGAATTCCTTCCACATTTCATATAATATCTTCCATGGATTTTGATTAAT

Coding sequence (CDS)

ATGGTCGTTCTCCAAATCATGGCCTCCAAATTTTCAGTTTCCACATTCCCATTTTCCCCTTCTTCCTCATCTGCTTGCTCAAGACTTGCAGCTTCCACTTCCTCTTCCTCTTCCATCTTATACCCCACAACCCCCAAAATTCGTCTCTCCTTGTGTAATTTCCCACTGGGTCTCGGCCTTTTCTCTCCATGGAGTGGTTTAAAGCATTTGGGTATTTCTACCAGAGGAAAGTTTCCCGAGAGAAGAAAGAGAATTCCTAAGGGGAAAGCAGTTTTTGCATCTTTGTTTGGGGTTGGAGCTCCCGAGGCACTGGTTATTGGGGTAGTGGCTCTGTTAGTTTTTGGTCCCAAGGGTCTTGCTGAGGTTGCTCGGACTCTGGGGAAGACCTTACGTGCATTTCAACCCACTATAAAAGAACTTCAGGACGTTTCTAGAGAATTCAAGACCACGCTTGAGCGAGAAATTGGTCTCGATGAAATCTCGAGTTCAGTCAACAGCTCATACAATTCAAGCAAATCAAATACCTACTCAGACCCACCTTCTGTTCCTAAAGCAGAAGAGTCTGTTGCAGTAGCTGAACCAAATGATTCTTCATCAGAAAGCAAAGCATATACCTCTGAAGAGTACCTAAAGGTTACAGAAGAGCAGCTGAAAGCTCAAGATCAGCTCCAAACCAATTTTGCAGCAGAAAGCCAGAGTGGATCCCAAGTACAGCCTGAAGGTTGCTAA

Protein sequence

MVVLQIMASKFSVSTFPFSPSSSSACSRLAASTSSSSSILYPTTPKIRLSLCNFPLGLGLFSPWSGLKHLGISTRGKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRAFQPTIKELQDVSREFKTTLEREIGLDEISSSVNSSYNSSKSNTYSDPPSVPKAEESVAVAEPNDSSSESKAYTSEEYLKVTEEQLKAQDQLQTNFAAESQSGSQVQPEGC

Homology

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BLAST of Lsi05G012110 vs. ExPASy Swiss-Prot
Match: Q94G16 (Sec-independent protein translocase protein TATB, chloroplastic OS=Pisum sativum OX=3888 GN=TATB PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.2e-49
Identity = 125/232 (53.88%), Postives = 155/232 (66.81%), Query Frame = 0


Query: 29  LAASTSSSSSILYPT--TPKIRLSLCN------------FPLGLGLFSPWSGLKHLGIST 88
           LA ++S+S+ +L P   T  + LS C             + LG  LF+PW+G K LG ST
Sbjct: 5   LAIASSTSTMLLCPKLGTCSMSLSTCTPTSHSKIHHFHLYSLGKRLFTPWNGFKQLGFST 64

Query: 89  RGKFP----ERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTL 148
           + K P      +K   KGK V+ASLFGVGAPEALVIGVVALLVFGPKGLAEVAR LGKTL
Sbjct: 65  KPKKPLFHFIGKKGRCKGKVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTL 124

Query: 149 RAFQPTIKELQDVSREFKTTLEREIGLDEISSSVNSSYNSSKSNTYSDPPSVPKAEESVA 208
           R FQPTI+E+QDVSREFK+TLEREIG+D+I++ + S+Y+S+  NT   P +      S  
Sbjct: 125 REFQPTIREIQDVSREFKSTLEREIGIDDITNPLQSTYSSNVRNTTPTPSATEITNNSQT 184

Query: 209 VAEPNDSSSESKAYTSEEYLKVTEEQLK---AQDQLQTNFAAESQSGSQVQP 240
             +PN    ESKAY+SEEYLK+TEEQLK   AQ Q QT+   E +   Q+QP
Sbjct: 185 AVDPNGKVDESKAYSSEEYLKITEEQLKAVAAQQQEQTSSPKEDEIEQQIQP 236

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BLAST of Lsi05G012110 vs. ExPASy Swiss-Prot
Match: Q9XH75 (Sec-independent protein translocase protein TATB, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TATB PE=1 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.2e-44
Identity = 126/231 (54.55%), Postives = 151/231 (65.37%), Query Frame = 0


Query: 28  RLAASTSSSSSIL------YP------TTPKIRLSLCNFPLGLGLFSPWSGLKHLGISTR 87
           ++ AS+SSS +I       YP         K  LS     LG   FSP+ GLKHLGIS  
Sbjct: 6   QIIASSSSSPTITKSHLFSYPPLQSRYKASKPNLSSWFSLLGSSRFSPYIGLKHLGISIS 65

Query: 88  GKF--PERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRAF 147
            K   PE+++R  K   + ASLFGVGAPEALVIGVVALLVFGPKGLAEVAR LGKTLR F
Sbjct: 66  PKSSNPEKKRRC-KSMMIRASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTF 125

Query: 148 QPTIKELQDVSREFKTTLEREIGLDEISSSVNSSYNSSKSNTYS-----DPPSVPKAEES 207
           QPTI+ELQDVSR+FK+TLEREIGLD+IS+   + YN +++N         PPSVP  E  
Sbjct: 126 QPTIRELQDVSRDFKSTLEREIGLDDISTP--NVYNQNRTNPVQPPPPPPPPSVPSTEAP 185

Query: 208 VAVAEPNDSSSESKAYTSEEYLKVTEEQLKAQDQLQTNFAAESQSGSQVQP 240
           V   +PNDS S  KAYTSE+YLK TEEQLKA    ++    ++Q+    QP
Sbjct: 186 VTANDPNDSQS-PKAYTSEDYLKFTEEQLKALSPAESQTEDQTQTQEPPQP 232

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BLAST of Lsi05G012110 vs. ExPASy Swiss-Prot
Match: Q2R237 (Sec-independent protein translocase protein TATB, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TATB PE=2 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 1.7e-35
Identity = 99/172 (57.56%), Postives = 119/172 (69.19%), Query Frame = 0


Query: 48  RLSLCNFPLGLGLFSPWSGLKHLGISTRGKFPERRKRIPKGKAVFASLFGVGAPEALVIG 107
           RL+L      LGL S  SG  H  +  R +  E  KR  +G  V+ASLFGVGAPEALVIG
Sbjct: 34  RLTLAQPYCTLGL-SFVSGRHHRFLLRRRRRTE-SKRTSRGTGVYASLFGVGAPEALVIG 93

Query: 108 VVALLVFGPKGLAEVARTLGKTLRAFQPTIKELQDVSREFKTTLEREIGLDEISSSVNSS 167
           VVALLVFGPKGLAEVAR LGKTLRAFQPTI+ELQDVSREF++TLEREIGLDE+  S+N  
Sbjct: 94  VVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFRSTLEREIGLDEVPPSMNYR 153

Query: 168 YNSSKSNTYSDPPSVPKAEESVAVAEPNDSSSESKAYTSEEYLKVTEEQLKA 220
                      PP++  +++  A+ + +D   E+  YTSEE +KVTEEQL A
Sbjct: 154 -----------PPTMNNSQQP-AIDQSSDDKPEAAPYTSEELIKVTEEQLAA 191

[Close]

BLAST of Lsi05G012110 vs. ExPASy Swiss-Prot
Match: O48950 (Sec-independent protein translocase protein TATB, chloroplastic OS=Zea mays OX=4577 GN=TATB PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.4e-32
Identity = 96/179 (53.63%), Postives = 111/179 (62.01%), Query Frame = 0


Query: 64  WSGLKHLGISTR--GKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAE 123
           W G++   I TR    F     R  +   + ASLFGVGAPEALVIGVVALLVFGPKGLAE
Sbjct: 37  WKGVEWGSIQTRMVSSFVAVGSRTRRRNVICASLFGVGAPEALVIGVVALLVFGPKGLAE 96

Query: 124 VARTLGKTLRAFQPTIKELQDVSREFKTTLEREIGLDEISSSVNSSYNSSKSNTYSDPPS 183
           VAR LGKTLRAFQPTI+ELQDVSREF++TLEREIG+DE+S S N  Y  +  N    P  
Sbjct: 97  VARNLGKTLRAFQPTIRELQDVSREFRSTLEREIGIDEVSQSTN--YRPTTMNNNQQP-- 156

Query: 184 VPKAEESVAVAEPNDSSSESKAYTSEEYLKVTEEQLKAQDQLQTNFAAESQSGSQVQPE 241
                     A+PN    E   YTSEE +KVTEEQ+ A      N   +  + SQ Q E
Sbjct: 157 ---------AADPN-VKPEPAPYTSEELMKVTEEQIAASAAAAWN--PQQPATSQQQEE 199

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BLAST of Lsi05G012110 vs. ExPASy Swiss-Prot
Match: Q31RR1 (Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=tatA PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.8e-09
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 94  SLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRAFQPTIKELQDVSREFKTTLER 153
           + FG+G PE LVI  +ALLVFGPK L E+ R+LGK LR F       QD SREF++ ++R
Sbjct: 2   NFFGIGLPEMLVILAIALLVFGPKKLPEIGRSLGKALRGF-------QDASREFESEIKR 56

Query: 154 EI 156
           EI
Sbjct: 62  EI 56

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BLAST of Lsi05G012110 vs. ExPASy TrEMBL
Match: A0A6J1CJQ6 (sec-independent protein translocase protein TATB, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011636 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 8.5e-102
Identity = 210/241 (87.14%), Postives = 226/241 (93.78%), Query Frame = 0


Query: 1   MVVLQIMASKFSVSTFPFSPSSSSACSRLAASTSSSSSILYPTTPKIRLSLCNFPLGLGL 60
           MVVL  MASK SV+TFPFSPS SSACSR+AASTSSSS IL+P TPKIRLSLCNFPLGLGL
Sbjct: 1   MVVL--MASKVSVTTFPFSPSPSSACSRVAASTSSSSPILFPKTPKIRLSLCNFPLGLGL 60

Query: 61  FSPWSGLKHLGISTRGKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA 120
           FSPW+GLKHLGISTR KF ERR+RIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA
Sbjct: 61  FSPWTGLKHLGISTRAKFLERRRRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA 120

Query: 121 EVARTLGKTLRAFQPTIKELQDVSREFKTTLEREIGLDEISSSVNSSYNSSKSNTYSDPP 180
           EVAR LGKTLRAFQPTI+ELQDVSREFKTTLEREIGLDEIS+SV+ SYNSS+S+TYS+PP
Sbjct: 121 EVARNLGKTLRAFQPTIRELQDVSREFKTTLEREIGLDEISNSVDGSYNSSRSSTYSNPP 180

Query: 181 SVPKAEESVAVAEPNDSSSESKAYTSEEYLKVTEEQLKAQDQLQTNFAAESQSGSQVQPE 240
           SVPKAE+ VAVAEPN S SESKAYTSEEYLKVTEEQLKAQ+Q+QTN AAESQSGSQV+ +
Sbjct: 181 SVPKAEDPVAVAEPNGSPSESKAYTSEEYLKVTEEQLKAQEQVQTNLAAESQSGSQVEAQ 239

Query: 241 G 242
           G
Sbjct: 241 G 239

[Close]

BLAST of Lsi05G012110 vs. ExPASy TrEMBL
Match: A0A6J1CJ51 (sec-independent protein translocase protein TATB, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011636 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.2e-100
Identity = 210/242 (86.78%), Postives = 226/242 (93.39%), Query Frame = 0


Query: 1   MVVLQIMASKFSVSTFPFSPSSSSACSRLAASTSSSSSILYPTTPKIRLSLCNFPLGLGL 60
           MVVL  MASK SV+TFPFSPS SSACSR+AASTSSSS IL+P TPKIRLSLCNFPLGLGL
Sbjct: 1   MVVL--MASKVSVTTFPFSPSPSSACSRVAASTSSSSPILFPKTPKIRLSLCNFPLGLGL 60

Query: 61  FSPWSGLKHLGISTRGKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA 120
           FSPW+GLKHLGISTR KF ERR+RIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA
Sbjct: 61  FSPWTGLKHLGISTRAKFLERRRRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA 120

Query: 121 EVARTLGKTLRAFQPTIKELQDVSREFKTTLEREIGLDEISSSVNSSYNSSKSNTYSDPP 180
           EVAR LGKTLRAFQPTI+ELQDVSREFKTTLEREIGLDEIS+SV+ SYNSS+S+TYS+PP
Sbjct: 121 EVARNLGKTLRAFQPTIRELQDVSREFKTTLEREIGLDEISNSVDGSYNSSRSSTYSNPP 180

Query: 181 SVPKAEESVAVAEPNDSS-SESKAYTSEEYLKVTEEQLKAQDQLQTNFAAESQSGSQVQP 240
           SVPKAE+ VAVAEP D S SESKAYTSEEYLKVTEEQLKAQ+Q+QTN AAESQSGSQV+ 
Sbjct: 181 SVPKAEDPVAVAEPTDGSPSESKAYTSEEYLKVTEEQLKAQEQVQTNLAAESQSGSQVEA 240

Query: 241 EG 242
           +G
Sbjct: 241 QG 240

[Close]

BLAST of Lsi05G012110 vs. ExPASy TrEMBL
Match: A0A6J1CHV3 (sec-independent protein translocase protein TATB, chloroplastic isoform X3 OS=Momordica charantia OX=3673 GN=LOC111011636 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.2e-100
Identity = 210/242 (86.78%), Postives = 226/242 (93.39%), Query Frame = 0


Query: 1   MVVLQIMASKFSVSTFPFSPSSSSACSRLAASTSSSSSILYPTTPKIRLSLCNFPLGLGL 60
           MVVL  MASK SV+TFPFSPS SSACSR+AASTSSSS IL+P TPKIRLSLCNFPLGLGL
Sbjct: 1   MVVL--MASKVSVTTFPFSPSPSSACSRVAASTSSSSPILFPKTPKIRLSLCNFPLGLGL 60

Query: 61  FSPWSGLKHLGISTRGKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA 120
           FSPW+GLKHLGISTR KF ERR+RIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA
Sbjct: 61  FSPWTGLKHLGISTRAKFLERRRRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA 120

Query: 121 EVARTLGKTLRAFQPTIKELQDVSREFKTTLEREIGLDEISSSVNSSYNSSKSNTYSDPP 180
           EVAR LGKTLRAFQPTI+ELQDVSREFKTTLEREIGLDEIS+SV+ SYNSS+S+TYS+PP
Sbjct: 121 EVARNLGKTLRAFQPTIRELQDVSREFKTTLEREIGLDEISNSVDGSYNSSRSSTYSNPP 180

Query: 181 SVPKAEESVAVAEPNDSS-SESKAYTSEEYLKVTEEQLKAQDQLQTNFAAESQSGSQVQP 240
           SVPKAE+ VAVAEP D S SESKAYTSEEYLKVTEEQLKAQ+Q+QTN AAESQSGSQV+ 
Sbjct: 181 SVPKAEDPVAVAEPTDGSPSESKAYTSEEYLKVTEEQLKAQEQVQTNLAAESQSGSQVEA 240

Query: 241 EG 242
           +G
Sbjct: 241 QG 240

[Close]

BLAST of Lsi05G012110 vs. ExPASy TrEMBL
Match: A0A1S3AYD4 (sec-independent protein translocase protein TATB, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484103 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 9.1e-96
Identity = 206/237 (86.92%), Postives = 218/237 (91.98%), Query Frame = 0


Query: 7   MASKFSVSTFPFSPSSSSACSRLAASTSSSSSILYPTTPKIRLSLCNFPLGLGLFSPWSG 66
           MASK SVSTFPFSPS +  CSRL+ STSSSSSILYP TPK  LSLCNFPLGL LFSPW+G
Sbjct: 1   MASKISVSTFPFSPSPT--CSRLSPSTSSSSSILYPRTPKFHLSLCNFPLGLRLFSPWTG 60

Query: 67  LKHLGISTRGK--FPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVAR 126
           LKHLGISTRG+  FPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVAR
Sbjct: 61  LKHLGISTRGRSPFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVAR 120

Query: 127 TLGKTLRAFQPTIKELQDVSREFKTTLEREIGLDEISSSVNSSYNSSKSNTYSDPPSVPK 186
           TLGKTLRAFQPTI+ELQDVSREFKTTLEREIGLDEI SSVNSSYN+SKS TYS+PPSV K
Sbjct: 121 TLGKTLRAFQPTIRELQDVSREFKTTLEREIGLDEIESSVNSSYNASKS-TYSNPPSVSK 180

Query: 187 AEESVAVAEPNDSSSESKAYTSEEYLKVTEEQLKAQDQLQTNFAAESQSGSQVQPEG 242
           AEE ++VAEPND SS SKAY+SEEYLKVTEEQLKAQ QLQT+FAA+SQSGSQVQ EG
Sbjct: 181 AEE-LSVAEPNDFSSASKAYSSEEYLKVTEEQLKAQGQLQTDFAAQSQSGSQVQREG 233

[Close]

BLAST of Lsi05G012110 vs. ExPASy TrEMBL
Match: A0A5A7SWY3 (Sec-independent protein translocase protein TATB OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001470 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 6.6e-94
Identity = 205/238 (86.13%), Postives = 217/238 (91.18%), Query Frame = 0


Query: 7   MASKFSVSTFPFSPSSSSACSRLAASTSSSSSILYPTTPKIRLSLCNFPLGLGLFSPWSG 66
           MASK SVSTFPFSPS +  CSRL+ STSSSSSILYP TPK  LSLCNFPLGL LFSPW+G
Sbjct: 1   MASKISVSTFPFSPSPT--CSRLSPSTSSSSSILYPRTPKFHLSLCNFPLGLRLFSPWTG 60

Query: 67  LKHLGISTRGK--FPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVAR 126
           LKHLGISTRG+  FPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVAR
Sbjct: 61  LKHLGISTRGRSPFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVAR 120

Query: 127 TLGKTLRAFQPTIKELQDVSREFKTTLEREIGLDEISSSVNSSYNSSKSNTYSDPPSVPK 186
           TLGKTLRAFQPTI+ELQDVSREFKTTLEREIGLDEI SSVNSSYN+SKS TYS+PPSV K
Sbjct: 121 TLGKTLRAFQPTIRELQDVSREFKTTLEREIGLDEIESSVNSSYNASKS-TYSNPPSVSK 180

Query: 187 AEESVAVAEPNDS-SSESKAYTSEEYLKVTEEQLKAQDQLQTNFAAESQSGSQVQPEG 242
           AEE ++VAEP D  SS SKAY+SEEYLKVTEEQLKAQ QLQT+FAA+SQSGSQVQ EG
Sbjct: 181 AEE-LSVAEPTDDFSSASKAYSSEEYLKVTEEQLKAQGQLQTDFAAQSQSGSQVQREG 234

[Close]

BLAST of Lsi05G012110 vs. NCBI nr
Match: XP_038891753.1 (sec-independent protein translocase protein TATB, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 407.9 bits (1047), Expect = 6.0e-110
Identity = 225/241 (93.36%), Postives = 228/241 (94.61%), Query Frame = 0


Query: 1   MVVLQIMASKFSVSTFPFSPSSSSACSRLAASTSSSSSILYPTTPKIRLSLCNFPLGLGL 60
           MVVL IMASKFSVSTFPFSPSSSSACSR A STS SSSILYP TPK RLSLCNFPLGLGL
Sbjct: 28  MVVLIIMASKFSVSTFPFSPSSSSACSRPAPSTSPSSSILYPRTPKFRLSLCNFPLGLGL 87

Query: 61  FSPWSGLKHLGISTRGKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA 120
           FSPW+GLKHLGIS  GKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA
Sbjct: 88  FSPWNGLKHLGISNGGKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA 147

Query: 121 EVARTLGKTLRAFQPTIKELQDVSREFKTTLEREIGLDEISSSVNSSYNSSKSNTYSDPP 180
           EVAR LGKTLRAFQPTI+ELQDVSREFKT+LEREIGLDEISSSVNSSYNSSK NTYSDPP
Sbjct: 148 EVARNLGKTLRAFQPTIRELQDVSREFKTSLEREIGLDEISSSVNSSYNSSKLNTYSDPP 207

Query: 181 SVPKAEESVAVAEPNDSSSESKAYTSEEYLKVTEEQLKAQDQLQTNFAAESQSGSQVQPE 240
            VPKAEESVAVAEPNDSSS SKAYTSEEYLKVTEEQL AQDQLQTNFAAESQSGSQVQPE
Sbjct: 208 PVPKAEESVAVAEPNDSSSASKAYTSEEYLKVTEEQLNAQDQLQTNFAAESQSGSQVQPE 267

Query: 241 G 242
           G
Sbjct: 268 G 268

[Close]

BLAST of Lsi05G012110 vs. NCBI nr
Match: XP_038891762.1 (sec-independent protein translocase protein TATB, chloroplastic isoform X3 [Benincasa hispida])

HSP 1 Score: 405.2 bits (1040), Expect = 3.9e-109
Identity = 225/243 (92.59%), Postives = 229/243 (94.24%), Query Frame = 0


Query: 1   MVVLQIMASKFSVSTFPFSPSSSSACSRLAASTSSSSSILYPTTPKIRLSLCNFPLGLGL 60
           MVVL IMASKFSVSTFPFSPSSSSACSR A STS SSSILYP TPK RLSLCNFPLGLGL
Sbjct: 28  MVVLIIMASKFSVSTFPFSPSSSSACSRPAPSTSPSSSILYPRTPKFRLSLCNFPLGLGL 87

Query: 61  FSPWSGLKHLGISTRGKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA 120
           FSPW+GLKHLGIS  GKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA
Sbjct: 88  FSPWNGLKHLGISNGGKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA 147

Query: 121 EVARTLGKTLRAFQPTIKELQDVSREFKTTLEREIGLDEISSSVNSSYNSSKSNTYSDPP 180
           EVAR LGKTLRAFQPTI+ELQDVSREFKT+LEREIGLDEISSSVNSSYNSSK NTYSDPP
Sbjct: 148 EVARNLGKTLRAFQPTIRELQDVSREFKTSLEREIGLDEISSSVNSSYNSSKLNTYSDPP 207

Query: 181 SVPKAEESVAVAEP-NDSSSESKAYTSEEYLKVTEEQLKAQDQLQTNFAAESQSGSQVQP 240
            VPKAEESVAVAEP +DSSS SKAYTSEEYLKVTEEQL AQDQLQTNFAAESQSGSQVQP
Sbjct: 208 PVPKAEESVAVAEPTDDSSSASKAYTSEEYLKVTEEQLNAQDQLQTNFAAESQSGSQVQP 267

Query: 241 EGC 243
           EGC
Sbjct: 268 EGC 270

[Close]

BLAST of Lsi05G012110 vs. NCBI nr
Match: XP_038891745.1 (sec-independent protein translocase protein TATB, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 401.4 bits (1030), Expect = 5.7e-108
Identity = 224/242 (92.56%), Postives = 228/242 (94.21%), Query Frame = 0


Query: 1   MVVLQIMASKFSVSTFPFSPSSSSACSRLAASTSSSSSILYPTTPKIRLSLCNFPLGLGL 60
           MVVL IMASKFSVSTFPFSPSSSSACSR A STS SSSILYP TPK RLSLCNFPLGLGL
Sbjct: 28  MVVLIIMASKFSVSTFPFSPSSSSACSRPAPSTSPSSSILYPRTPKFRLSLCNFPLGLGL 87

Query: 61  FSPWSGLKHLGISTRGKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA 120
           FSPW+GLKHLGIS  GKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA
Sbjct: 88  FSPWNGLKHLGISNGGKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA 147

Query: 121 EVARTLGKTLRAFQPTIKELQDVSREFKTTLEREIGLDEISSSVNSSYNSSKSNTYSDPP 180
           EVAR LGKTLRAFQPTI+ELQDVSREFKT+LEREIGLDEISSSVNSSYNSSK NTYSDPP
Sbjct: 148 EVARNLGKTLRAFQPTIRELQDVSREFKTSLEREIGLDEISSSVNSSYNSSKLNTYSDPP 207

Query: 181 SVPKAEESVAVAEP-NDSSSESKAYTSEEYLKVTEEQLKAQDQLQTNFAAESQSGSQVQP 240
            VPKAEESVAVAEP +DSSS SKAYTSEEYLKVTEEQL AQDQLQTNFAAESQSGSQVQP
Sbjct: 208 PVPKAEESVAVAEPTDDSSSASKAYTSEEYLKVTEEQLNAQDQLQTNFAAESQSGSQVQP 267

Query: 241 EG 242
           EG
Sbjct: 268 EG 269

[Close]

BLAST of Lsi05G012110 vs. NCBI nr
Match: XP_022141178.1 (sec-independent protein translocase protein TATB, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 379.8 bits (974), Expect = 1.8e-101
Identity = 210/241 (87.14%), Postives = 226/241 (93.78%), Query Frame = 0


Query: 1   MVVLQIMASKFSVSTFPFSPSSSSACSRLAASTSSSSSILYPTTPKIRLSLCNFPLGLGL 60
           MVVL  MASK SV+TFPFSPS SSACSR+AASTSSSS IL+P TPKIRLSLCNFPLGLGL
Sbjct: 1   MVVL--MASKVSVTTFPFSPSPSSACSRVAASTSSSSPILFPKTPKIRLSLCNFPLGLGL 60

Query: 61  FSPWSGLKHLGISTRGKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA 120
           FSPW+GLKHLGISTR KF ERR+RIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA
Sbjct: 61  FSPWTGLKHLGISTRAKFLERRRRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA 120

Query: 121 EVARTLGKTLRAFQPTIKELQDVSREFKTTLEREIGLDEISSSVNSSYNSSKSNTYSDPP 180
           EVAR LGKTLRAFQPTI+ELQDVSREFKTTLEREIGLDEIS+SV+ SYNSS+S+TYS+PP
Sbjct: 121 EVARNLGKTLRAFQPTIRELQDVSREFKTTLEREIGLDEISNSVDGSYNSSRSSTYSNPP 180

Query: 181 SVPKAEESVAVAEPNDSSSESKAYTSEEYLKVTEEQLKAQDQLQTNFAAESQSGSQVQPE 240
           SVPKAE+ VAVAEPN S SESKAYTSEEYLKVTEEQLKAQ+Q+QTN AAESQSGSQV+ +
Sbjct: 181 SVPKAEDPVAVAEPNGSPSESKAYTSEEYLKVTEEQLKAQEQVQTNLAAESQSGSQVEAQ 239

Query: 241 G 242
           G
Sbjct: 241 G 239

[Close]

BLAST of Lsi05G012110 vs. NCBI nr
Match: XP_022141179.1 (sec-independent protein translocase protein TATB, chloroplastic isoform X3 [Momordica charantia])

HSP 1 Score: 375.9 bits (964), Expect = 2.5e-100
Identity = 210/242 (86.78%), Postives = 226/242 (93.39%), Query Frame = 0


Query: 1   MVVLQIMASKFSVSTFPFSPSSSSACSRLAASTSSSSSILYPTTPKIRLSLCNFPLGLGL 60
           MVVL  MASK SV+TFPFSPS SSACSR+AASTSSSS IL+P TPKIRLSLCNFPLGLGL
Sbjct: 1   MVVL--MASKVSVTTFPFSPSPSSACSRVAASTSSSSPILFPKTPKIRLSLCNFPLGLGL 60

Query: 61  FSPWSGLKHLGISTRGKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA 120
           FSPW+GLKHLGISTR KF ERR+RIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA
Sbjct: 61  FSPWTGLKHLGISTRAKFLERRRRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLA 120

Query: 121 EVARTLGKTLRAFQPTIKELQDVSREFKTTLEREIGLDEISSSVNSSYNSSKSNTYSDPP 180
           EVAR LGKTLRAFQPTI+ELQDVSREFKTTLEREIGLDEIS+SV+ SYNSS+S+TYS+PP
Sbjct: 121 EVARNLGKTLRAFQPTIRELQDVSREFKTTLEREIGLDEISNSVDGSYNSSRSSTYSNPP 180

Query: 181 SVPKAEESVAVAEPNDSS-SESKAYTSEEYLKVTEEQLKAQDQLQTNFAAESQSGSQVQP 240
           SVPKAE+ VAVAEP D S SESKAYTSEEYLKVTEEQLKAQ+Q+QTN AAESQSGSQV+ 
Sbjct: 181 SVPKAEDPVAVAEPTDGSPSESKAYTSEEYLKVTEEQLKAQEQVQTNLAAESQSGSQVEA 240

Query: 241 EG 242
           +G
Sbjct: 241 QG 240

[Close]

BLAST of Lsi05G012110 vs. TAIR 10
Match: AT5G52440.1 (Bacterial sec-independent translocation protein mttA/Hcf106 )

HSP 1 Score: 181.4 bits (459), Expect = 8.6e-46
Identity = 126/231 (54.55%), Postives = 151/231 (65.37%), Query Frame = 0


Query: 28  RLAASTSSSSSIL------YP------TTPKIRLSLCNFPLGLGLFSPWSGLKHLGISTR 87
           ++ AS+SSS +I       YP         K  LS     LG   FSP+ GLKHLGIS  
Sbjct: 6   QIIASSSSSPTITKSHLFSYPPLQSRYKASKPNLSSWFSLLGSSRFSPYIGLKHLGISIS 65

Query: 88  GKF--PERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRAF 147
            K   PE+++R  K   + ASLFGVGAPEALVIGVVALLVFGPKGLAEVAR LGKTLR F
Sbjct: 66  PKSSNPEKKRRC-KSMMIRASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTF 125

Query: 148 QPTIKELQDVSREFKTTLEREIGLDEISSSVNSSYNSSKSNTYS-----DPPSVPKAEES 207
           QPTI+ELQDVSR+FK+TLEREIGLD+IS+   + YN +++N         PPSVP  E  
Sbjct: 126 QPTIRELQDVSRDFKSTLEREIGLDDISTP--NVYNQNRTNPVQPPPPPPPPSVPSTEAP 185

Query: 208 VAVAEPNDSSSESKAYTSEEYLKVTEEQLKAQDQLQTNFAAESQSGSQVQP 240
           V   +PNDS S  KAYTSE+YLK TEEQLKA    ++    ++Q+    QP
Sbjct: 186 VTANDPNDSQS-PKAYTSEDYLKFTEEQLKALSPAESQTEDQTQTQEPPQP 232

[Close]

BLAST of Lsi05G012110 vs. TAIR 10
Match: AT5G28750.1 (Bacterial sec-independent translocation protein mttA/Hcf106 )

HSP 1 Score: 51.6 bits (122), Expect = 1.0e-06
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 94  SLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRAFQPTIKELQDVSREFKTTLER 153
           +LFG+G PE  VI  VA L+FGPK L E+ +++GKT+++FQ   KE +    E KT  E 
Sbjct: 62  ALFGLGVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFES---ELKTEPEE 121

Query: 154 EIGLDEISSSVNSSYNSSKSNT 176
            +     SS V +S    +  T
Sbjct: 122 SVA---ESSQVATSNKEEEKKT 137

The following BLAST results are available for this feature:

BLAST of Lsi05G012110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94G16	1.2e-49	53.88	Sec-independent protein translocase protein TATB, chloroplastic OS=Pisum sativum...	[more]
Q9XH75	1.2e-44	54.55	Sec-independent protein translocase protein TATB, chloroplastic OS=Arabidopsis t...	[more]
Q2R237	1.7e-35	57.56	Sec-independent protein translocase protein TATB, chloroplastic OS=Oryza sativa ...	[more]
O48950	1.4e-32	53.63	Sec-independent protein translocase protein TATB, chloroplastic OS=Zea mays OX=4...	[more]
Q31RR1	4.8e-09	54.84	Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (str...	[more]

BLAST of Lsi05G012110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJQ6	8.5e-102	87.14	sec-independent protein translocase protein TATB, chloroplastic isoform X2 OS=Mo...	[more]
A0A6J1CJ51	1.2e-100	86.78	sec-independent protein translocase protein TATB, chloroplastic isoform X1 OS=Mo...	[more]
A0A6J1CHV3	1.2e-100	86.78	sec-independent protein translocase protein TATB, chloroplastic isoform X3 OS=Mo...	[more]
A0A1S3AYD4	9.1e-96	86.92	sec-independent protein translocase protein TATB, chloroplastic isoform X2 OS=Cu...	[more]
A0A5A7SWY3	6.6e-94	86.13	Sec-independent protein translocase protein TATB OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Lsi05G012110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891753.1	6.0e-110	93.36	sec-independent protein translocase protein TATB, chloroplastic isoform X2 [Beni...	[more]
XP_038891762.1	3.9e-109	92.59	sec-independent protein translocase protein TATB, chloroplastic isoform X3 [Beni...	[more]
XP_038891745.1	5.7e-108	92.56	sec-independent protein translocase protein TATB, chloroplastic isoform X1 [Beni...	[more]
XP_022141178.1	1.8e-101	87.14	sec-independent protein translocase protein TATB, chloroplastic isoform X2 [Momo...	[more]
XP_022141179.1	2.5e-100	86.78	sec-independent protein translocase protein TATB, chloroplastic isoform X3 [Momo...	[more]

BLAST of Lsi05G012110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52440.1	8.6e-46	54.55	Bacterial sec-independent translocation protein mttA/Hcf106	[more]
AT5G28750.1	1.0e-06	40.24	Bacterial sec-independent translocation protein mttA/Hcf106	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01506	TATBPROTEIN	coord: 115..134 score: 30.52 coord: 95..115 score: 40.46
None	No IPR available	GENE3D	1.20.5.3310		coord: 95..143 e-value: 1.8E-17 score: 64.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..181
None	No IPR available	PANTHER	PTHR33162	SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTIC	coord: 7..238
None	No IPR available	PANTHER	PTHR33162:SF3	SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATB, CHLOROPLASTIC	coord: 7..238
IPR003369	Sec-independent protein translocase protein TatA/B/E	PFAM	PF02416	TatA_B_E	coord: 98..148 e-value: 1.6E-23 score: 81.7
IPR006312	Sec-independent protein translocase protein TatA/E	TIGRFAM	TIGR01411	TIGR01411	coord: 97..142 e-value: 1.9E-15 score: 54.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G012110.1	Lsi05G012110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902458	positive regulation of stomatal opening
biological_process	GO:0045038	protein import into chloroplast thylakoid membrane
biological_process	GO:0043953	protein transport by the Tat complex
biological_process	GO:1903426	regulation of reactive oxygen species biosynthetic process
biological_process	GO:2000070	regulation of response to water deprivation
biological_process	GO:0009409	response to cold
biological_process	GO:0015031	protein transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0033281	TAT protein transport complex
molecular_function	GO:0009977	proton motive force dependent protein transmembrane transporter activity