Lsi05G010860 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAACGTTTCAAATAAAATGTACAGGAACAGATATATATATATATATAATTGAAACAAACTCCAAAGTTTACGATAATTATTTCGTATAATTTTAACCTTTTTTTTCGCAGATTAAACGATCATCATCATGAATCTCAAATATTGCAAGGGTTTACTAGTTTTGGTTTTGGCATTGTTGATGGTTATTGAAACAAGCCTTGGAGCTCCATTTGAGCGTTGGAGAGTTGAAGTAGCCAATGAAATGCAAAATGGGCAAACTTTATATCTTCGGTGCAAGTCCAAAGAAGATGATTTGGGAAAGCAATATTTAAAACATGGGCAGAAATTTTCATGGAAATTTAGAGAGAATTTGTGGCAAAATACACTTTATTGGTGCTACATGAGAAATGATCACAATCATGTATCTTTAGAAGTGTTTTGGCCAGAATCAGCTTCTCAGTCTTGGCTTGCTTATAGATGTAGAGATAATGTTTGCTATTGGTCAGCAAGAAATGATGGAATTTACATCTATAATGTTCCTGAAAATAAGTTTGAGTTTCATGCTAAATGGCTGTCTGGTTGGTAGGGTTGTTATATGTGAAGGAAATTAAGGAATTTATTTTCTTCAAAACACAGTAATAAAAGCCAAAATGAGCATAGCTCGACTGGCATAAAGCTCGGTCCGATCCCTTTGCTCCCACATATTGTCAAAAAGAAAAAAAACAGTAATAATAAAAGATTATTCTTGGACTTGTATGATGAGTTTGGATCGATTCATATATGTTTATCTTTTTTTGTAGGGGCCTTTTGTTTGTTTGTTTATTATTATTTTTTTTTGTTTGAGAAGAGATAATTAGGATCTTTAAAGGCTTGGAATTATAAATGCCCAAAATTATAGATATCCAACATCTTTAAATAACACTATTTGTTTTGTAGGGATGTTTTTATAGATATCTGAAAATACTTGGATAACTATGTTTCGGAGGATTTCTACTTGGAAATGTTTTAAATTTACAAAAATGTTTCAAGATGCTCTCACGACTATTCATTAGTTTATAATTAATTTAATGAACTTATATAATTTTTTTTTGGGAAATTTTCTCAAATAGAAAAAATGTCAAATTATTTACAGAAAATAGCAAAAAAAATACTGATAGACATTGATAGACTTCTATCAGCATCTACCAGTGATAGACTTCTATAATTTCTATCGCTGATAGACCCTGATAGACTTCTATCAGCGTCTATCACAACTATCTAAAAATTTTGCTATTTTATGTAAATAGTTTCCCTTATTTTTCTATTTTTAAAACTTCCCATTTTTTCTATTAATTTGATTTTTTAAAAATTAATATTGTTTATATTATTTTTTTTATGTATTTTCTCAATAAATTAATAGAGGAGTTTTTAAAAATAGAAAAATAATGAACACTATTTACACAAAATAGCAAAATTTTTAGATAGTTGTGGTATACGTTGATAGAAGTCTATCAGGGTCTATCAGTGATAGAAATGATAGAAGTCGATCACTGATAGATGCTGATAGAAGTTTATCAATATCTATCTTTTTTTTTTTTGCTATTTTCTGTAAATAGTTTGACATTTTTTCTATGTGTGAAAATTTTTCAAATATATTTTTTATAAAATAAATATTTTTAAATTTAAATTTGAATATCTTTCTATAAAAATAAAAACAACTACCATATAACAAAAAAATTGATATATATGGTTGACAATTTTATTTTAATTATAAAATGCAAGTAAAGAAGAGGAAGGGTAAAAAAGTAAAAAGAGGATGGCATCAACATGAGAATTTGAAAAATCCATGTTTTAGGAGGGCATCCAAAATTCTCGAGATGCCCTCGGTAAGGACATCTTAGGATGCTAGAGAATATCTAAATGCCAAGACATGCATATTAGATTATATTACTGTAAAACAAACACGGTAATCCAAATCTCCAGTACTCTATAGAAATATTGGATGTTTGTGAAACAAATGGTCCCTTATAGTTTTGATAATATAGGGATGAGAGAATTCAAACTACAAACCTCTCGATTTAAATTCGAATCTCTTCATATATATATATATATATATATATAATAGTTGAACTAGGATGGTTTGGACATTTTTCTCTTATGTTTGAGTATGTGTGTGATGTTCATTATCTACTAGATTAAATGAAATGCATTTAAAAATTTAGAGAAAAAAAAATCAATTCAACTCTATTTTGAAATTGTTTTCAATTAAAACTTCAAACCAATAAATATTGTGTTTAGTTAGATGAACAAAATTTGTGGGTGCATGATATTAAGGATCTCAATTTCACTTCAAAGGGAAAACATGAGGTGTAGTTAATGATATTTTTTTTAATAAACAAATTAGATGGGGGAGGGTTTTATTGTAAATGAAATAAGCTTTTTGTGTTATAAGAACAGCTACTAGACATCTTGGTAAATGATGGTAAATTTGGACATGATTGAAAAATTAGGATAATTGTAATGAGTAGCAATTTTAAGAATAATAACTAAGTATATAACAACATTTTTAAAAAATTGCAAATATAGCAAAGTTTATCAGTGATAGATTTCTATTACTGATAGACTCTTAGGCTTTATCAGTGATAGACCACCTAGACCATAAAAGTCTATCAACGATAGAAGTCTATCACTGATAGACTTTGCTATATTTGCAATTTTTTTAAAATGTTGCTATATGTGCTAATACTTTGAATTTGATTGCTATATTTACAATTGTCCCTTTAAAGACTATGTACATTAGTTAACCCTTAACTATAGGAAAATTGGAACAGATAGGATTTTTTAGTTTTGATTTTTGAGCAATAGGAAAAAAAAGTAACAACAGTGATGATAGCACCTCAGACATCTAATTTACCATGAATTTTTTAATATACCCAGAATACCCTCAGATGAAAATCTCGCTATCTAGATTTAGGACCTGTTAGATTGACTAGAGAGAAAATATATATTTTTTTAAATTCATTTTTATTTAAACTCTTTTGATAAAAATAGTTTAAAATGAACTCTGAAAGTGTTTCAAAAGCTATTTTGAATGGTTGTCAAACACTTCAATTTTTTTTCAAAATGACTTATTTTAAAATTAAACACTTGAAAAGTTAATATAAACATACTCTTAGTTACACTATATCTACTCTTAGTTACACTGTATCTCTTTTTTAGTATTCCAAATTTCTTTTAATCATTTACTTCCTCCCAAGAGAATCTAAATATTATGAGTTTGTTATCTTTTTAAAGTTTAAATATGAAATCTGAGGTAGCATTGTGTGTAATGTTAATTATATGTTGATAATGTTGCAACATTATTGAATGATGCTATAGTACTAAGGTAGCATTGTTGTCTCGTGTGATGGCGATTGATAGGAGTTGGGAGATGAATCTTTTTCTTCATCGGATGCATTTAAATGAACTTTTTAAGTGTTTAGTTTTAAAAATAAGTCATTTTGGAAAGAAAAGAAAGTGTTTGGAAATCCTTCAAAAGTAGCTTTTGAAGTGTATTTTAATTAGATTTTATCAAAAGAGTTTAAATAAAAATATTTTTTTTGAAAAACATTTAATTTTTTTCTTTAATCAATCCAAACAGGCTTGATTAATAAGATATATTTGCATTCAAGTATTTTTCTACTCATGGTATTGGTTGCAAATACAAAATATAGAATTAACACTCCTGTATAGTTACAGGAGAAAAGACACGAAAGATATCTCTATAGATACATACGCAGACGAACCCCAAGAGGTTAGGATAGAAACCACTTTGACTCTCGAAGAATGGCTTGACCTTTTGAAAGAATACAATGATGCCTTTGCATGGTCCTATGATGATATGCCTGGACTCAGCACAGACATAATTTCGAAAAAAATCCCTTTGTATCCTTGATGCCAAGCCAGTCAAGCAGAAACTTTGGAGAATGAGGCCCGAATAGACATTTGAAAATCAAAGAGGAAGTAGAGAAACAAAGTTTTAAGGAAGACTACCGAGCTCCACGATAGATAAGCGCCCATCATCTCTATGCGAATTCTGGCTTTAGCTTTTCGTCTTTGGTTAGTATTAGCGAAAACTCGCTCGACTTAATAATAATTGTCTTACTCGACTTGCTTACTAGCTGCATTTTTGACTAATATAATAATTAGACATATGTTAGTGCGTGGTGCAAAGGCCTACATTTGAGAGGCATTGCCTATAGCACTGATAGCGCATGCACAAGACCTTTTGAATGCACACAAAGAATATCACCATGAAAATGAGACTTTAGAAACTGACTCGTAAGAACAAAATAGTCTCATTACTTAGTTTCACTCATATGTACTCCACTTTCTTAGTGTTTAGATCAAGGTACCCATATTATGTATATAATTTTTCCTCAAGATGCCCCATTTCCCTTTCAGTCAAGCCTTTTTAGCCCTTTCCTCGAGGAGTCGAGCTGCCTATCTTCTCCTCGAGTCGCACTAGCCCGACGATATCGATCTCGACCATTATTTTATGAAATTTTATTCTAACTTCTAGCTTGACTTATCCTTAGCTAAAGAAAGAAAGATAGTTGAAGGTCGAAGACCAGAGTTCGATTTTCACAACATATGAAAAAGACCTACAGGAAGAAGTTTACACGAGTCCTCCCCCCAGTTGTGTAAGGGGAGGAGAACAAGAGAGGTCAACTGGAGTGGAAGCCAAACGACGGGGTTGAGAATCTGTGATTGATCCGAAGAACCACTGCCAGATATGATTTTGCTTCCCCTTCGTACTACCGAGATTCTTGCTCGACTTTCTTTCGACTTAAGAAGGCAGCGGTGAGAATGATGATCACTTCGGAACTCGTTGAGAATGGGCATTTTAGGGCTGGATCTAAAAGCTCTCCAACGTGTTGCGATATATCATTAATTGAGATGTAA ATGAAACTTTTGGTTTTGGCATTGTTGATGGTTATTGAAACAAGCCTTGGAGCTCCATTTGAGCGTTGGAGAGTTGAAGTAGCCAATGAAATGCAAAATGGGCAAACTTTATATCTTCGGTGCAAGTCCAAAGAAGATGATTTGGGAAAGCAATATTTAAAACATGGGCAGAAATTTTCATGGAAATTTAGAGAGAATTTGTGGCAAAATACACTTTATTGGTGCTACATGAGAAATGATCACAATCATGTATCTTTAGAAGTGTTTTGGCCAGAATCAGCTTCTCAGTCTTGGCTTGCTTATAGATGTAGAGATAATGTTTGCTATTGGTCAGCAAGAAATGATGGAATTTACATCTATAATGTTCCTGAAAATAAAACCACTGCCAGATATGATTTTGCTTCCCCTTCGTACTACCGAGATTCTTGCTCGACTTTCTTTCGACTTAAGAAGGCAGCGGTGAGAATGATGATCACTTCGGAACTCGTTGAGAATGGGCATTTTAGGGCTGGATCTAAAAGCTCTCCAACGTGTTGCGATATATCATTAATTGAGATGTAA ATGAAACTTTTGGTTTTGGCATTGTTGATGGTTATTGAAACAAGCCTTGGAGCTCCATTTGAGCGTTGGAGAGTTGAAGTAGCCAATGAAATGCAAAATGGGCAAACTTTATATCTTCGGTGCAAGTCCAAAGAAGATGATTTGGGAAAGCAATATTTAAAACATGGGCAGAAATTTTCATGGAAATTTAGAGAGAATTTGTGGCAAAATACACTTTATTGGTGCTACATGAGAAATGATCACAATCATGTATCTTTAGAAGTGTTTTGGCCAGAATCAGCTTCTCAGTCTTGGCTTGCTTATAGATGTAGAGATAATGTTTGCTATTGGTCAGCAAGAAATGATGGAATTTACATCTATAATGTTCCTGAAAATAAAACCACTGCCAGATATGATTTTGCTTCCCCTTCGTACTACCGAGATTCTTGCTCGACTTTCTTTCGACTTAAGAAGGCAGCGGTGAGAATGATGATCACTTCGGAACTCGTTGAGAATGGGCATTTTAGGGCTGGATCTAAAAGCTCTCCAACGTGTTGCGATATATCATTAATTGAGATGTAA MKLLVLALLMVIETSLGAPFERWRVEVANEMQNGQTLYLRCKSKEDDLGKQYLKHGQKFSWKFRENLWQNTLYWCYMRNDHNHVSLEVFWPESASQSWLAYRCRDNVCYWSARNDGIYIYNVPENKTTARYDFASPSYYRDSCSTFFRLKKAAVRMMITSELVENGHFRAGSKSSPTCCDISLIEM Homology
BLAST of Lsi05G010860 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 1.7e-22 Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = 0
BLAST of Lsi05G010860 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 3.8e-22 Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 0
BLAST of Lsi05G010860 vs. ExPASy Swiss-Prot
Match: Q9FI84 (S-protein homolog 27 OS=Arabidopsis thaliana OX=3702 GN=SPH27 PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.7e-09 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 0
BLAST of Lsi05G010860 vs. ExPASy Swiss-Prot
Match: P0DN92 (S-protein homolog 24 OS=Arabidopsis thaliana OX=3702 GN=SPH24 PE=3 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 2.4e-08 Identity = 37/98 (37.76%), Postives = 51/98 (52.04%), Query Frame = 0
BLAST of Lsi05G010860 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 3.1e-08 Identity = 34/118 (28.81%), Postives = 57/118 (48.31%), Query Frame = 0
BLAST of Lsi05G010860 vs. ExPASy TrEMBL
Match: A0A314XMI1 (S-protein homolog OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_22176 PE=3 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 1.8e-27 Identity = 56/115 (48.70%), Postives = 78/115 (67.83%), Query Frame = 0
BLAST of Lsi05G010860 vs. ExPASy TrEMBL
Match: A0A6P5RMF3 (S-protein homolog OS=Prunus avium OX=42229 GN=LOC110750112 PE=3 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 2.4e-27 Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 0
BLAST of Lsi05G010860 vs. ExPASy TrEMBL
Match: A0A314ZRK3 (S-protein homolog OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_06998 PE=3 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 9.1e-27 Identity = 56/114 (49.12%), Postives = 76/114 (66.67%), Query Frame = 0
BLAST of Lsi05G010860 vs. ExPASy TrEMBL
Match: A0A251N118 (S-protein homolog OS=Prunus persica OX=3760 GN=PRUPE_8G208300 PE=3 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26 Identity = 58/124 (46.77%), Postives = 80/124 (64.52%), Query Frame = 0
BLAST of Lsi05G010860 vs. ExPASy TrEMBL
Match: A0A5E4EJG4 (S-protein homolog OS=Prunus dulcis OX=3755 GN=ALMOND_2B017645 PE=3 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 2.6e-26 Identity = 58/125 (46.40%), Postives = 79/125 (63.20%), Query Frame = 0
BLAST of Lsi05G010860 vs. NCBI nr
Match: KAE8650840.1 (hypothetical protein Csa_017632 [Cucumis sativus]) HSP 1 Score: 213.8 bits (543), Expect = 1.3e-51 Identity = 97/124 (78.23%), Postives = 109/124 (87.90%), Query Frame = 0
BLAST of Lsi05G010860 vs. NCBI nr
Match: XP_004136434.3 (S-protein homolog 1-like [Cucumis sativus]) HSP 1 Score: 134.0 bits (336), Expect = 1.3e-27 Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 0
BLAST of Lsi05G010860 vs. NCBI nr
Match: KGN60342.2 (hypothetical protein Csa_002569, partial [Cucumis sativus]) HSP 1 Score: 134.0 bits (336), Expect = 1.3e-27 Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 0
BLAST of Lsi05G010860 vs. NCBI nr
Match: PQP91987.1 (uncharacterized protein Pyn_22176 [Prunus yedoensis var. nudiflora]) HSP 1 Score: 132.5 bits (332), Expect = 3.8e-27 Identity = 56/115 (48.70%), Postives = 78/115 (67.83%), Query Frame = 0
BLAST of Lsi05G010860 vs. NCBI nr
Match: XP_021806080.1 (S-protein homolog 1-like [Prunus avium]) HSP 1 Score: 132.1 bits (331), Expect = 4.9e-27 Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 0
BLAST of Lsi05G010860 vs. TAIR 10
Match: AT4G29035.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 107.5 bits (267), Expect = 1.2e-23 Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = 0
BLAST of Lsi05G010860 vs. TAIR 10
Match: AT4G16295.1 (S-protein homologue 1 ) HSP 1 Score: 106.3 bits (264), Expect = 2.7e-23 Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 0
BLAST of Lsi05G010860 vs. TAIR 10
Match: AT5G04350.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 64.7 bits (156), Expect = 9.0e-11 Identity = 33/101 (32.67%), Postives = 53/101 (52.48%), Query Frame = 0
BLAST of Lsi05G010860 vs. TAIR 10
Match: AT5G06020.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 0
BLAST of Lsi05G010860 vs. TAIR 10
Match: AT5G04347.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 63.5 bits (153), Expect = 2.0e-10 Identity = 37/113 (32.74%), Postives = 56/113 (49.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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