Lsi05G010300 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAATAAAAGCTGAAGAATTTGGGAAAAATTGCGGCCAGTCGGAGGTGGTGCCGGACCCTAGGTTTCAGGGAATCTTGCGACCCTTCCGAATCTCCGATCAACGGTAAAGAAATCGGATTCCTTTCCTCATCTCCCTGATTCGATCTTTGACAGAGATTTCTCCATCCGATTTTGCGTATAATTTTTGGTGTTTTCAAATTGGAGTTAATTCTCCTCTGGTTGCTTCACCGCGCTTCTAATTCAGGTTTCAACTTAGTCTCATTGTTCGAATTCAATATTTTAGGTGTGAAGCTTTGCCGACTATGAGAGTGAATGTGTTGAATTTGATGCGCTTTAGTTTTGTTTGGTAGGTTTGGATTATTGGCTGCACAATGCAATGTGTTGGGTGAACCTACGCATTTGATTCAATGGAGGAAGAGGAGGATCGGATTTTGCTGAACAGCTTGGGTGTGACGTCTGCTAATCCAGAGGATATAGAGCGGGACTTGTTAAAGGAGGTCATGGCCGAAGCTCTTTAGCATAATTCGTATAATTTTTCGTTTTTTAGTAGCGTGTAGTTACTAATATGCAGAGCGCTGTTAATATCCCGTGGTTTGCTTTACATCCTTCTTAATATGCAGAGCGTTGTTAATCATGATATCATTGTTAACGCGGATGATGGGGAGAAGATACGGCTAGAGGAGCAAGCTTCTCAAGTTGCACGTAGAGCAGCCGAGGCATTGCGCCAGTCTAGAATGCTGCGAAGTAACGAGAGCATCTCAGTTCCAACATGGACTGGAAAAGCTGGAACTGCTGGTGCACCATCGTCTGTGGGTCGGAAGTTTGGTTCAACTGTTAACTCTCTAGTAAACAACAATTCCAAATCCTCAGATGAAGTATCTAGAAATGGAACTAGCCATTTAAATGGCTATGCCGCTGGAACATCTTGTGGAAAGGCCTTATCTTCAGCAGAGCTGCTGGCTAAAATCCGAGGAAACCAAGAAAGAGCAATCAGCACTGGGCTTGAACATCAATCAACTCCTTCAAGTAGTTCAAACAATGTAAGAGCTGCCGGTGTCGGTTCTTCTCAGTCGGCGAATAACTTATCTGTAGTACAACCCGAAGTATTGATTCGTCAGATATGTTAGAAACCTGACTATTTTATGTGGACTTTTGGCAAATATTTTGTCATTCATTCATGTTAGCTACGTCTCTAGGATTAGAGAGTTTATATTAGAGCACTTTTCTAAATTCTAGAGTTATAATAGGAAATAACCATAAATAATGTACCATAACTAATTTAGATAATTTGTTTGACCATGTACCATAACTAATTTAGATAATTTGTTTGACCGTGTAACAT AAAAATAAAAGCTGAAGAATTTGGGAAAAATTGCGGCCAGTCGGAGGTGGTGCCGGACCCTAGGTTTCAGGGAATCTTGCGACCCTTCCGAATCTCCGATCAACGGTAAAGAAATCGGATTCCTTTCCTCATCTCCCTGATTCGATCTTTGACAGAGATTTCTCCATCCGATTTTGCGTATAATTTTTGGTGTTTTCAAATTGGAGTTAATTCTCCTCTGGTTGCTTCACCGCGCTTCTAATTCAGGTTTGGATTATTGGCTGCACAATGCAATGTGTTGGGTGAACCTACGCATTTGATTCAATGGAGGAAGAGGAGGATCGGATTTTGCTGAACAGCTTGGGTGTGACGTCTGCTAATCCAGAGGATATAGAGCGGGACTTGTTAAAGGAGAGCGTTGTTAATCATGATATCATTGTTAACGCGGATGATGGGGAGAAGATACGGCTAGAGGAGCAAGCTTCTCAAGTTGCACGTAGAGCAGCCGAGGCATTGCGCCAGTCTAGAATGCTGCGAAGTAACGAGAGCATCTCAGTTCCAACATGGACTGGAAAAGCTGGAACTGCTGGTGCACCATCGTCTGTGGGTCGGAAGTTTGGTTCAACTGTTAACTCTCTAGTAAACAACAATTCCAAATCCTCAGATGAAGTATCTAGAAATGGAACTAGCCATTTAAATGGCTATGCCGCTGGAACATCTTGTGGAAAGGCCTTATCTTCAGCAGAGCTGCTGGCTAAAATCCGAGGAAACCAAGAAAGAGCAATCAGCACTGGGCTTGAACATCAATCAACTCCTTCAAGTAGTTCAAACAATGTAAGAGCTGCCGGTGTCGGTTCTTCTCAGTCGGCGAATAACTTATCTGTAGTACAACCCGAAGTATTGATTCGTCAGATATGTTAGAAACCTGACTATTTTATGTGGACTTTTGGCAAATATTTTGTCATTCATTCATGTTAGCTACGTCTCTAGGATTAGAGAGTTTATATTAGAGCACTTTTCTAAATTCTAGAGTTATAATAGGAAATAACCATAAATAATGTACCATAACTAATTTAGATAATTTGTTTGACCATGTACCATAACTAATTTAGATAATTTGTTTGACCGTGTAACAT ATGGAGGAAGAGGAGGATCGGATTTTGCTGAACAGCTTGGGTGTGACGTCTGCTAATCCAGAGGATATAGAGCGGGACTTGTTAAAGGAGAGCGTTGTTAATCATGATATCATTGTTAACGCGGATGATGGGGAGAAGATACGGCTAGAGGAGCAAGCTTCTCAAGTTGCACGTAGAGCAGCCGAGGCATTGCGCCAGTCTAGAATGCTGCGAAGTAACGAGAGCATCTCAGTTCCAACATGGACTGGAAAAGCTGGAACTGCTGGTGCACCATCGTCTGTGGGTCGGAAGTTTGGTTCAACTGTTAACTCTCTAGTAAACAACAATTCCAAATCCTCAGATGAAGTATCTAGAAATGGAACTAGCCATTTAAATGGCTATGCCGCTGGAACATCTTGTGGAAAGGCCTTATCTTCAGCAGAGCTGCTGGCTAAAATCCGAGGAAACCAAGAAAGAGCAATCAGCACTGGGCTTGAACATCAATCAACTCCTTCAAGTAGTTCAAACAATGTAAGAGCTGCCGGTGTCGGTTCTTCTCAGTCGGCGAATAACTTATCTGTAGTACAACCCGAAGTATTGATTCGTCAGATATGTTAG MEEEEDRILLNSLGVTSANPEDIERDLLKESVVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGAPSSVGRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGTSCGKALSSAELLAKIRGNQERAISTGLEHQSTPSSSSNNVRAAGVGSSQSANNLSVVQPEVLIRQIC Homology
BLAST of Lsi05G010300 vs. ExPASy Swiss-Prot
Match: Q7F2E4 (DNA excision repair protein CSB OS=Oryza sativa subsp. japonica OX=39947 GN=CSB PE=2 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 1.8e-38 Identity = 99/170 (58.24%), Postives = 127/170 (74.71%), Query Frame = 0
BLAST of Lsi05G010300 vs. ExPASy Swiss-Prot
Match: Q9ZV43 (Protein CHROMATIN REMODELING 8 OS=Arabidopsis thaliana OX=3702 GN=CHR8 PE=2 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 1.1e-35 Identity = 101/171 (59.06%), Postives = 119/171 (69.59%), Query Frame = 0
BLAST of Lsi05G010300 vs. ExPASy Swiss-Prot
Match: F8VPZ5 (DNA excision repair protein ERCC-6 OS=Mus musculus OX=10090 GN=Ercc6 PE=1 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 8.7e-09 Identity = 48/144 (33.33%), Postives = 70/144 (48.61%), Query Frame = 0
BLAST of Lsi05G010300 vs. ExPASy TrEMBL
Match: A0A6J1HR51 (protein CHROMATIN REMODELING 8-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467020 PE=4 SV=1) HSP 1 Score: 264.6 bits (675), Expect = 3.3e-67 Identity = 149/169 (88.17%), Postives = 154/169 (91.12%), Query Frame = 0
BLAST of Lsi05G010300 vs. ExPASy TrEMBL
Match: A0A6J1HR51 (protein CHROMATIN REMODELING 8-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467020 PE=4 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04 Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0
HSP 2 Score: 264.6 bits (675), Expect = 3.3e-67 Identity = 149/169 (88.17%), Postives = 154/169 (91.12%), Query Frame = 0
BLAST of Lsi05G010300 vs. ExPASy TrEMBL
Match: A0A6J1HLN5 (protein CHROMATIN REMODELING 8-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464093 PE=4 SV=1) HSP 1 Score: 261.2 bits (666), Expect = 3.6e-66 Identity = 148/169 (87.57%), Postives = 152/169 (89.94%), Query Frame = 0
BLAST of Lsi05G010300 vs. ExPASy TrEMBL
Match: A0A6J1HLN5 (protein CHROMATIN REMODELING 8-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464093 PE=4 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04 Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0
HSP 2 Score: 261.2 bits (666), Expect = 3.6e-66 Identity = 148/169 (87.57%), Postives = 152/169 (89.94%), Query Frame = 0
BLAST of Lsi05G010300 vs. ExPASy TrEMBL
Match: A0A0A0L7W7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G375720 PE=4 SV=1) HSP 1 Score: 260.0 bits (663), Expect = 8.1e-66 Identity = 148/170 (87.06%), Postives = 159/170 (93.53%), Query Frame = 0
BLAST of Lsi05G010300 vs. NCBI nr
Match: XP_038887672.1 (protein CHROMATIN REMODELING 8 isoform X2 [Benincasa hispida]) HSP 1 Score: 289.7 bits (740), Expect = 2.0e-74 Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0
BLAST of Lsi05G010300 vs. NCBI nr
Match: XP_038887673.1 (protein CHROMATIN REMODELING 8 isoform X3 [Benincasa hispida]) HSP 1 Score: 289.7 bits (740), Expect = 2.0e-74 Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0
BLAST of Lsi05G010300 vs. NCBI nr
Match: XP_038887676.1 (protein CHROMATIN REMODELING 8 isoform X5 [Benincasa hispida]) HSP 1 Score: 289.7 bits (740), Expect = 2.0e-74 Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0
BLAST of Lsi05G010300 vs. NCBI nr
Match: XP_038887674.1 (protein CHROMATIN REMODELING 8 isoform X4 [Benincasa hispida]) HSP 1 Score: 289.7 bits (740), Expect = 2.0e-74 Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0
BLAST of Lsi05G010300 vs. NCBI nr
Match: XP_038887670.1 (protein CHROMATIN REMODELING 8 isoform X1 [Benincasa hispida] >XP_038887671.1 protein CHROMATIN REMODELING 8 isoform X1 [Benincasa hispida]) HSP 1 Score: 289.7 bits (740), Expect = 2.0e-74 Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0
BLAST of Lsi05G010300 vs. TAIR 10
Match: AT2G18760.1 (chromatin remodeling 8 ) HSP 1 Score: 151.4 bits (381), Expect = 7.8e-37 Identity = 101/171 (59.06%), Postives = 119/171 (69.59%), Query Frame = 0
HSP 2 Score: 44.7 bits (104), Expect = 1.0e-04 Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 0
The following BLAST results are available for this feature:
Pages
Pages
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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