Lsi05G010300 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G010300
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein CHROMATIN REMODELING 8-like
Locationchr05: 17840762 .. 17842105 (-)
RNA-Seq ExpressionLsi05G010300
SyntenyLsi05G010300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAATAAAAGCTGAAGAATTTGGGAAAAATTGCGGCCAGTCGGAGGTGGTGCCGGACCCTAGGTTTCAGGGAATCTTGCGACCCTTCCGAATCTCCGATCAACGGTAAAGAAATCGGATTCCTTTCCTCATCTCCCTGATTCGATCTTTGACAGAGATTTCTCCATCCGATTTTGCGTATAATTTTTGGTGTTTTCAAATTGGAGTTAATTCTCCTCTGGTTGCTTCACCGCGCTTCTAATTCAGGTTTCAACTTAGTCTCATTGTTCGAATTCAATATTTTAGGTGTGAAGCTTTGCCGACTATGAGAGTGAATGTGTTGAATTTGATGCGCTTTAGTTTTGTTTGGTAGGTTTGGATTATTGGCTGCACAATGCAATGTGTTGGGTGAACCTACGCATTTGATTCAATGGAGGAAGAGGAGGATCGGATTTTGCTGAACAGCTTGGGTGTGACGTCTGCTAATCCAGAGGATATAGAGCGGGACTTGTTAAAGGAGGTCATGGCCGAAGCTCTTTAGCATAATTCGTATAATTTTTCGTTTTTTAGTAGCGTGTAGTTACTAATATGCAGAGCGCTGTTAATATCCCGTGGTTTGCTTTACATCCTTCTTAATATGCAGAGCGTTGTTAATCATGATATCATTGTTAACGCGGATGATGGGGAGAAGATACGGCTAGAGGAGCAAGCTTCTCAAGTTGCACGTAGAGCAGCCGAGGCATTGCGCCAGTCTAGAATGCTGCGAAGTAACGAGAGCATCTCAGTTCCAACATGGACTGGAAAAGCTGGAACTGCTGGTGCACCATCGTCTGTGGGTCGGAAGTTTGGTTCAACTGTTAACTCTCTAGTAAACAACAATTCCAAATCCTCAGATGAAGTATCTAGAAATGGAACTAGCCATTTAAATGGCTATGCCGCTGGAACATCTTGTGGAAAGGCCTTATCTTCAGCAGAGCTGCTGGCTAAAATCCGAGGAAACCAAGAAAGAGCAATCAGCACTGGGCTTGAACATCAATCAACTCCTTCAAGTAGTTCAAACAATGTAAGAGCTGCCGGTGTCGGTTCTTCTCAGTCGGCGAATAACTTATCTGTAGTACAACCCGAAGTATTGATTCGTCAGATATGTTAGAAACCTGACTATTTTATGTGGACTTTTGGCAAATATTTTGTCATTCATTCATGTTAGCTACGTCTCTAGGATTAGAGAGTTTATATTAGAGCACTTTTCTAAATTCTAGAGTTATAATAGGAAATAACCATAAATAATGTACCATAACTAATTTAGATAATTTGTTTGACCATGTACCATAACTAATTTAGATAATTTGTTTGACCGTGTAACAT

mRNA sequence

AAAAATAAAAGCTGAAGAATTTGGGAAAAATTGCGGCCAGTCGGAGGTGGTGCCGGACCCTAGGTTTCAGGGAATCTTGCGACCCTTCCGAATCTCCGATCAACGGTAAAGAAATCGGATTCCTTTCCTCATCTCCCTGATTCGATCTTTGACAGAGATTTCTCCATCCGATTTTGCGTATAATTTTTGGTGTTTTCAAATTGGAGTTAATTCTCCTCTGGTTGCTTCACCGCGCTTCTAATTCAGGTTTGGATTATTGGCTGCACAATGCAATGTGTTGGGTGAACCTACGCATTTGATTCAATGGAGGAAGAGGAGGATCGGATTTTGCTGAACAGCTTGGGTGTGACGTCTGCTAATCCAGAGGATATAGAGCGGGACTTGTTAAAGGAGAGCGTTGTTAATCATGATATCATTGTTAACGCGGATGATGGGGAGAAGATACGGCTAGAGGAGCAAGCTTCTCAAGTTGCACGTAGAGCAGCCGAGGCATTGCGCCAGTCTAGAATGCTGCGAAGTAACGAGAGCATCTCAGTTCCAACATGGACTGGAAAAGCTGGAACTGCTGGTGCACCATCGTCTGTGGGTCGGAAGTTTGGTTCAACTGTTAACTCTCTAGTAAACAACAATTCCAAATCCTCAGATGAAGTATCTAGAAATGGAACTAGCCATTTAAATGGCTATGCCGCTGGAACATCTTGTGGAAAGGCCTTATCTTCAGCAGAGCTGCTGGCTAAAATCCGAGGAAACCAAGAAAGAGCAATCAGCACTGGGCTTGAACATCAATCAACTCCTTCAAGTAGTTCAAACAATGTAAGAGCTGCCGGTGTCGGTTCTTCTCAGTCGGCGAATAACTTATCTGTAGTACAACCCGAAGTATTGATTCGTCAGATATGTTAGAAACCTGACTATTTTATGTGGACTTTTGGCAAATATTTTGTCATTCATTCATGTTAGCTACGTCTCTAGGATTAGAGAGTTTATATTAGAGCACTTTTCTAAATTCTAGAGTTATAATAGGAAATAACCATAAATAATGTACCATAACTAATTTAGATAATTTGTTTGACCATGTACCATAACTAATTTAGATAATTTGTTTGACCGTGTAACAT

Coding sequence (CDS)

ATGGAGGAAGAGGAGGATCGGATTTTGCTGAACAGCTTGGGTGTGACGTCTGCTAATCCAGAGGATATAGAGCGGGACTTGTTAAAGGAGAGCGTTGTTAATCATGATATCATTGTTAACGCGGATGATGGGGAGAAGATACGGCTAGAGGAGCAAGCTTCTCAAGTTGCACGTAGAGCAGCCGAGGCATTGCGCCAGTCTAGAATGCTGCGAAGTAACGAGAGCATCTCAGTTCCAACATGGACTGGAAAAGCTGGAACTGCTGGTGCACCATCGTCTGTGGGTCGGAAGTTTGGTTCAACTGTTAACTCTCTAGTAAACAACAATTCCAAATCCTCAGATGAAGTATCTAGAAATGGAACTAGCCATTTAAATGGCTATGCCGCTGGAACATCTTGTGGAAAGGCCTTATCTTCAGCAGAGCTGCTGGCTAAAATCCGAGGAAACCAAGAAAGAGCAATCAGCACTGGGCTTGAACATCAATCAACTCCTTCAAGTAGTTCAAACAATGTAAGAGCTGCCGGTGTCGGTTCTTCTCAGTCGGCGAATAACTTATCTGTAGTACAACCCGAAGTATTGATTCGTCAGATATGTTAG

Protein sequence

MEEEEDRILLNSLGVTSANPEDIERDLLKESVVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGAPSSVGRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGTSCGKALSSAELLAKIRGNQERAISTGLEHQSTPSSSSNNVRAAGVGSSQSANNLSVVQPEVLIRQIC
Homology
BLAST of Lsi05G010300 vs. ExPASy Swiss-Prot
Match: Q7F2E4 (DNA excision repair protein CSB OS=Oryza sativa subsp. japonica OX=39947 GN=CSB PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.8e-38
Identity = 99/170 (58.24%), Postives = 127/170 (74.71%), Query Frame = 0

Query: 31   SVVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 90
            S +NHD I+NA+D +K+RLE +A+QVA+RAAEALRQSRMLRS+ES SVPTWTG+AG AGA
Sbjct: 965  SAINHDAIMNANDDQKLRLEAEATQVAQRAAEALRQSRMLRSHESFSVPTWTGRAGAAGA 1024

Query: 91   PSSVGRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGTSCGKALSSAELLAKIRGNQ 150
            PSSV RKFGST+N+ + N+S+ S+  +  G S       G   GKALSSAELLA+IRG +
Sbjct: 1025 PSSVRRKFGSTLNTQLVNSSQPSETSNGRGQS----LQVGALNGKALSSAELLARIRGTR 1084

Query: 151  ERAISTGLEHQSTPSSSSNNV-RAAGVGSSQSANNLS-VVQPEVLIRQIC 199
            E A S  LEHQ    S+SN+   ++G G + S++  S +VQPEVLIRQ+C
Sbjct: 1085 EGAASDALEHQLNLGSASNHTSSSSGNGRASSSSTRSMIVQPEVLIRQLC 1130

BLAST of Lsi05G010300 vs. ExPASy Swiss-Prot
Match: Q9ZV43 (Protein CHROMATIN REMODELING 8 OS=Arabidopsis thaliana OX=3702 GN=CHR8 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.1e-35
Identity = 101/171 (59.06%), Postives = 119/171 (69.59%), Query Frame = 0

Query: 31   SVVNHDIIVNA-DDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAG 90
            S VNHD I+NA D+ EK+RLE QASQVA+RAAEALRQSRMLRS ESISVPTWTG++G AG
Sbjct: 978  SAVNHDAIMNANDEEEKMRLEHQASQVAQRAAEALRQSRMLRSRESISVPTWTGRSGCAG 1037

Query: 91   APSSVGRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGTSCGKALSSAELLAKIRGN 150
            APSSV R+FGSTVNS +         +        NG +AG S GKA SSAELL +IRG+
Sbjct: 1038 APSSVRRRFGSTVNSRLTQTGDKPSAIK-------NGISAGLSSGKAPSSAELLNRIRGS 1097

Query: 151  QERAISTGLE--HQSTPSSSSNNVRAAGVGSSQSANNLSVVQPEVLIRQIC 199
            +E+AI  GLE    S PSSS ++ R   VGS         +QPEVLIR+IC
Sbjct: 1098 REQAIGVGLEQPQSSFPSSSGSSSR---VGS---------LQPEVLIRKIC 1129

BLAST of Lsi05G010300 vs. ExPASy Swiss-Prot
Match: F8VPZ5 (DNA excision repair protein ERCC-6 OS=Mus musculus OX=10090 GN=Ercc6 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.7e-09
Identity = 48/144 (33.33%), Postives = 70/144 (48.61%), Query Frame = 0

Query: 31   SVVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 90
            SVV HD I++    + + +E +A++VA+ A +ALR SR      +  VPTWTG  G +GA
Sbjct: 1255 SVVRHDAIIDGSSPDYVLVEAEANRVAQDALKALRLSRQQCLGAASGVPTWTGHRGISGA 1314

Query: 91   PSSVGRKFG------------STVNSLVNNNSKSSDEVSRNGTSHLNGYAAGTSCGKALS 150
            P+ V  +FG            S++     NN K   E   +   H +G   G S   A S
Sbjct: 1315 PTGVKNRFGQKRDSSLPVQHPSSLTEKTQNNMKK--EGKAHTPEHFSGKEDGASVSGAPS 1374

Query: 151  SAELLAKIRGNQERAISTGLEHQS 163
            S+ LLA++R      +   LE  S
Sbjct: 1375 SSSLLARMRARNHMILPERLESDS 1396

BLAST of Lsi05G010300 vs. ExPASy TrEMBL
Match: A0A6J1HR51 (protein CHROMATIN REMODELING 8-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467020 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.3e-67
Identity = 149/169 (88.17%), Postives = 154/169 (91.12%), Query Frame = 0

Query: 31   SVVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 90
            S VNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSR+LRSNES+SVPTWTGKAGTAGA
Sbjct: 997  SAVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRILRSNESVSVPTWTGKAGTAGA 1056

Query: 91   PSSVGRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGTSCGKALSSAELLAKIRGNQ 150
            PSSV RKFGSTVNSLVNN SKS DE SRNG SHLNG AAGTS GKALSSAELLAKIRGNQ
Sbjct: 1057 PSSVRRKFGSTVNSLVNNKSKSPDEASRNGASHLNGLAAGTSSGKALSSAELLAKIRGNQ 1116

Query: 151  ERAISTGLE-HQSTPSSSSNNVRAAGVGSSQSANNLSVVQPEVLIRQIC 199
            ERA+S GLE HQ  PSSSSNNVR AGVGSS+S+ NLS VQPEVLIRQIC
Sbjct: 1117 ERALSAGLEHHQPAPSSSSNNVRGAGVGSSRSSKNLSGVQPEVLIRQIC 1165

BLAST of Lsi05G010300 vs. ExPASy TrEMBL
Match: A0A6J1HR51 (protein CHROMATIN REMODELING 8-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467020 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 1  MEEEEDRILLNSLGVTSANPEDIERDLLKESVVNHD 37
          MEEEEDRI LNSLGVTSANPEDIERDL++E+  N +
Sbjct: 1  MEEEEDRIFLNSLGVTSANPEDIERDLIEEAKKNSE 36


HSP 2 Score: 264.6 bits (675), Expect = 3.3e-67
Identity = 149/169 (88.17%), Postives = 154/169 (91.12%), Query Frame = 0

Query: 31  SVVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 90
           S VNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSR+LRSNES+SVPTWTGKAGTAGA
Sbjct: 794 SAVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRILRSNESVSVPTWTGKAGTAGA 853

Query: 91  PSSVGRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGTSCGKALSSAELLAKIRGNQ 150
           PSSV RKFGSTVNSLVNN SKS DE SRNG SHLNG AAGTS GKALSSAELLAKIRGNQ
Sbjct: 854 PSSVRRKFGSTVNSLVNNKSKSPDEASRNGASHLNGLAAGTSSGKALSSAELLAKIRGNQ 913

Query: 151 ERAISTGLE-HQSTPSSSSNNVRAAGVGSSQSANNLSVVQPEVLIRQIC 199
           ERA+S GLE HQ  PSSSSNNVR AGVGSS+S+ NLS VQPEVLIRQIC
Sbjct: 914 ERALSAGLEHHQPAPSSSSNNVRGAGVGSSRSSKNLSGVQPEVLIRQIC 962

BLAST of Lsi05G010300 vs. ExPASy TrEMBL
Match: A0A6J1HLN5 (protein CHROMATIN REMODELING 8-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464093 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.6e-66
Identity = 148/169 (87.57%), Postives = 152/169 (89.94%), Query Frame = 0

Query: 31   SVVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 90
            S VNHDII NADDGEKIRLEEQASQVARRAAEALRQSR+LRSNE ISVPTWTGKAGTAGA
Sbjct: 997  SAVNHDIIFNADDGEKIRLEEQASQVARRAAEALRQSRILRSNERISVPTWTGKAGTAGA 1056

Query: 91   PSSVGRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGTSCGKALSSAELLAKIRGNQ 150
            PSSV RKFGSTVNSLVNN SKS DE SRNG SHLNG AAGTS GKALSSAELLAKIRGNQ
Sbjct: 1057 PSSVRRKFGSTVNSLVNNKSKSPDEASRNGASHLNGLAAGTSSGKALSSAELLAKIRGNQ 1116

Query: 151  ERAISTGLE-HQSTPSSSSNNVRAAGVGSSQSANNLSVVQPEVLIRQIC 199
            ERA+S GLE HQ  PSSSSNNVR AGVGSS+S+ NLS VQPEVLIRQIC
Sbjct: 1117 ERALSAGLEHHQPAPSSSSNNVRGAGVGSSRSSKNLSGVQPEVLIRQIC 1165

BLAST of Lsi05G010300 vs. ExPASy TrEMBL
Match: A0A6J1HLN5 (protein CHROMATIN REMODELING 8-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464093 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 1  MEEEEDRILLNSLGVTSANPEDIERDLLKESVVNHD 37
          MEEEEDRI LNSLGVTSANPEDIERDL++E+  N +
Sbjct: 1  MEEEEDRIFLNSLGVTSANPEDIERDLIEEAKKNSE 36


HSP 2 Score: 261.2 bits (666), Expect = 3.6e-66
Identity = 148/169 (87.57%), Postives = 152/169 (89.94%), Query Frame = 0

Query: 31  SVVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 90
           S VNHDII NADDGEKIRLEEQASQVARRAAEALRQSR+LRSNE ISVPTWTGKAGTAGA
Sbjct: 794 SAVNHDIIFNADDGEKIRLEEQASQVARRAAEALRQSRILRSNERISVPTWTGKAGTAGA 853

Query: 91  PSSVGRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGTSCGKALSSAELLAKIRGNQ 150
           PSSV RKFGSTVNSLVNN SKS DE SRNG SHLNG AAGTS GKALSSAELLAKIRGNQ
Sbjct: 854 PSSVRRKFGSTVNSLVNNKSKSPDEASRNGASHLNGLAAGTSSGKALSSAELLAKIRGNQ 913

Query: 151 ERAISTGLE-HQSTPSSSSNNVRAAGVGSSQSANNLSVVQPEVLIRQIC 199
           ERA+S GLE HQ  PSSSSNNVR AGVGSS+S+ NLS VQPEVLIRQIC
Sbjct: 914 ERALSAGLEHHQPAPSSSSNNVRGAGVGSSRSSKNLSGVQPEVLIRQIC 962

BLAST of Lsi05G010300 vs. ExPASy TrEMBL
Match: A0A0A0L7W7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G375720 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 8.1e-66
Identity = 148/170 (87.06%), Postives = 159/170 (93.53%), Query Frame = 0

Query: 31   SVVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 90
            S VNHDII+NADDGEKIRLEEQASQVARRAAEALRQSRMLRSNES+SVPTWTGKAGTAGA
Sbjct: 930  SAVNHDIIINADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESVSVPTWTGKAGTAGA 989

Query: 91   PSSVGRKFGSTVNSL-VNNNSKSSDEVSRNGTSHLNGYAAGTSCGKALSSAELLAKIRGN 150
            PSSV RKFGSTVN+L V NNSKSS+EVS+NGT HLNG+AAGTSCGKALSSA+LLAKIRGN
Sbjct: 990  PSSVRRKFGSTVNTLVVTNNSKSSNEVSKNGTIHLNGHAAGTSCGKALSSADLLAKIRGN 1049

Query: 151  QERAISTGLEHQSTPSSSSNNVRAAGVGSSQSAN-NLSVVQPEVLIRQIC 199
            QERAIS GLEHQST  SS+NNVR  GVGSS+S++ NLSVVQPEVLIRQIC
Sbjct: 1050 QERAISAGLEHQST--SSTNNVRTVGVGSSRSSSKNLSVVQPEVLIRQIC 1097

BLAST of Lsi05G010300 vs. NCBI nr
Match: XP_038887672.1 (protein CHROMATIN REMODELING 8 isoform X2 [Benincasa hispida])

HSP 1 Score: 289.7 bits (740), Expect = 2.0e-74
Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0

Query: 31  SVVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 90
           S VNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA
Sbjct: 808 SAVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 867

Query: 91  PSSVGRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGTSCGKALSSAELLAKIRGNQ 150
           PSSV RKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAG SCGKALSSAELLAKIRGNQ
Sbjct: 868 PSSVRRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGASCGKALSSAELLAKIRGNQ 927

Query: 151 ERAISTGLEHQSTPSSSSNNVRAAGVGSSQSANNLSVVQPEVLIRQIC 199
           ERAIS GLEHQ+TPSSSSNNVR AG+GSS+S+ NLSVVQPEVLIRQIC
Sbjct: 928 ERAISAGLEHQTTPSSSSNNVRVAGIGSSRSSKNLSVVQPEVLIRQIC 975

BLAST of Lsi05G010300 vs. NCBI nr
Match: XP_038887673.1 (protein CHROMATIN REMODELING 8 isoform X3 [Benincasa hispida])

HSP 1 Score: 289.7 bits (740), Expect = 2.0e-74
Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0

Query: 31  SVVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 90
           S VNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA
Sbjct: 802 SAVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 861

Query: 91  PSSVGRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGTSCGKALSSAELLAKIRGNQ 150
           PSSV RKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAG SCGKALSSAELLAKIRGNQ
Sbjct: 862 PSSVRRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGASCGKALSSAELLAKIRGNQ 921

Query: 151 ERAISTGLEHQSTPSSSSNNVRAAGVGSSQSANNLSVVQPEVLIRQIC 199
           ERAIS GLEHQ+TPSSSSNNVR AG+GSS+S+ NLSVVQPEVLIRQIC
Sbjct: 922 ERAISAGLEHQTTPSSSSNNVRVAGIGSSRSSKNLSVVQPEVLIRQIC 969

BLAST of Lsi05G010300 vs. NCBI nr
Match: XP_038887676.1 (protein CHROMATIN REMODELING 8 isoform X5 [Benincasa hispida])

HSP 1 Score: 289.7 bits (740), Expect = 2.0e-74
Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0

Query: 31  SVVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 90
           S VNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA
Sbjct: 794 SAVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 853

Query: 91  PSSVGRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGTSCGKALSSAELLAKIRGNQ 150
           PSSV RKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAG SCGKALSSAELLAKIRGNQ
Sbjct: 854 PSSVRRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGASCGKALSSAELLAKIRGNQ 913

Query: 151 ERAISTGLEHQSTPSSSSNNVRAAGVGSSQSANNLSVVQPEVLIRQIC 199
           ERAIS GLEHQ+TPSSSSNNVR AG+GSS+S+ NLSVVQPEVLIRQIC
Sbjct: 914 ERAISAGLEHQTTPSSSSNNVRVAGIGSSRSSKNLSVVQPEVLIRQIC 961

BLAST of Lsi05G010300 vs. NCBI nr
Match: XP_038887674.1 (protein CHROMATIN REMODELING 8 isoform X4 [Benincasa hispida])

HSP 1 Score: 289.7 bits (740), Expect = 2.0e-74
Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0

Query: 31  SVVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 90
           S VNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA
Sbjct: 798 SAVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 857

Query: 91  PSSVGRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGTSCGKALSSAELLAKIRGNQ 150
           PSSV RKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAG SCGKALSSAELLAKIRGNQ
Sbjct: 858 PSSVRRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGASCGKALSSAELLAKIRGNQ 917

Query: 151 ERAISTGLEHQSTPSSSSNNVRAAGVGSSQSANNLSVVQPEVLIRQIC 199
           ERAIS GLEHQ+TPSSSSNNVR AG+GSS+S+ NLSVVQPEVLIRQIC
Sbjct: 918 ERAISAGLEHQTTPSSSSNNVRVAGIGSSRSSKNLSVVQPEVLIRQIC 965

BLAST of Lsi05G010300 vs. NCBI nr
Match: XP_038887670.1 (protein CHROMATIN REMODELING 8 isoform X1 [Benincasa hispida] >XP_038887671.1 protein CHROMATIN REMODELING 8 isoform X1 [Benincasa hispida])

HSP 1 Score: 289.7 bits (740), Expect = 2.0e-74
Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0

Query: 31   SVVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 90
            S VNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA
Sbjct: 997  SAVNHDIIVNADDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAGA 1056

Query: 91   PSSVGRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGTSCGKALSSAELLAKIRGNQ 150
            PSSV RKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAG SCGKALSSAELLAKIRGNQ
Sbjct: 1057 PSSVRRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGASCGKALSSAELLAKIRGNQ 1116

Query: 151  ERAISTGLEHQSTPSSSSNNVRAAGVGSSQSANNLSVVQPEVLIRQIC 199
            ERAIS GLEHQ+TPSSSSNNVR AG+GSS+S+ NLSVVQPEVLIRQIC
Sbjct: 1117 ERAISAGLEHQTTPSSSSNNVRVAGIGSSRSSKNLSVVQPEVLIRQIC 1164

BLAST of Lsi05G010300 vs. TAIR 10
Match: AT2G18760.1 (chromatin remodeling 8 )

HSP 1 Score: 151.4 bits (381), Expect = 7.8e-37
Identity = 101/171 (59.06%), Postives = 119/171 (69.59%), Query Frame = 0

Query: 31   SVVNHDIIVNA-DDGEKIRLEEQASQVARRAAEALRQSRMLRSNESISVPTWTGKAGTAG 90
            S VNHD I+NA D+ EK+RLE QASQVA+RAAEALRQSRMLRS ESISVPTWTG++G AG
Sbjct: 978  SAVNHDAIMNANDEEEKMRLEHQASQVAQRAAEALRQSRMLRSRESISVPTWTGRSGCAG 1037

Query: 91   APSSVGRKFGSTVNSLVNNNSKSSDEVSRNGTSHLNGYAAGTSCGKALSSAELLAKIRGN 150
            APSSV R+FGSTVNS +         +        NG +AG S GKA SSAELL +IRG+
Sbjct: 1038 APSSVRRRFGSTVNSRLTQTGDKPSAIK-------NGISAGLSSGKAPSSAELLNRIRGS 1097

Query: 151  QERAISTGLE--HQSTPSSSSNNVRAAGVGSSQSANNLSVVQPEVLIRQIC 199
            +E+AI  GLE    S PSSS ++ R   VGS         +QPEVLIR+IC
Sbjct: 1098 REQAIGVGLEQPQSSFPSSSGSSSR---VGS---------LQPEVLIRKIC 1129


HSP 2 Score: 44.7 bits (104), Expect = 1.0e-04
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 1  MEEEEDRILLNSLGVTSANPEDIERDLLKESVVNHDIIVNADDGEKIRLEEQASQVARRA 60
          MEE+ED+ LL+SLGVTSANPED+E+ +L E+    D     D+G  +  EE+++Q+    
Sbjct: 1  MEEDEDQFLLSSLGVTSANPEDLEQKILDEATKKPD----NDEGGSV--EEKSTQLEGTN 60

Query: 61 AEALRQSRMLRSNESI 77
            +  Q+ +L    ++
Sbjct: 61 LLSSSQNELLNKLRAV 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q7F2E41.8e-3858.24DNA excision repair protein CSB OS=Oryza sativa subsp. japonica OX=39947 GN=CSB ... [more]
Q9ZV431.1e-3559.06Protein CHROMATIN REMODELING 8 OS=Arabidopsis thaliana OX=3702 GN=CHR8 PE=2 SV=1[more]
F8VPZ58.7e-0933.33DNA excision repair protein ERCC-6 OS=Mus musculus OX=10090 GN=Ercc6 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1HR513.3e-6788.17protein CHROMATIN REMODELING 8-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A6J1HR511.0e-0477.78protein CHROMATIN REMODELING 8-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A6J1HLN53.6e-6687.57protein CHROMATIN REMODELING 8-like isoform X1 OS=Cucurbita moschata OX=3662 GN=... [more]
A0A6J1HLN51.0e-0477.78protein CHROMATIN REMODELING 8-like isoform X1 OS=Cucurbita moschata OX=3662 GN=... [more]
A0A0A0L7W78.1e-6687.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G375720 PE=4 SV=1[more]

Pages

Match NameE-valueIdentityDescription
XP_038887672.12.0e-7494.05protein CHROMATIN REMODELING 8 isoform X2 [Benincasa hispida][more]
XP_038887673.12.0e-7494.05protein CHROMATIN REMODELING 8 isoform X3 [Benincasa hispida][more]
XP_038887676.12.0e-7494.05protein CHROMATIN REMODELING 8 isoform X5 [Benincasa hispida][more]
XP_038887674.12.0e-7494.05protein CHROMATIN REMODELING 8 isoform X4 [Benincasa hispida][more]
XP_038887670.12.0e-7494.05protein CHROMATIN REMODELING 8 isoform X1 [Benincasa hispida] >XP_038887671.1 pr... [more]

Pages

Match NameE-valueIdentityDescription
AT2G18760.17.8e-3759.06chromatin remodeling 8 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 46..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..179

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G010300.1Lsi05G010300.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding