Lsi05G009920 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G009920
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPhosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1
Locationchr05: 17346855 .. 17347136 (+)
RNA-Seq ExpressionLsi05G009920
SyntenyLsi05G009920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCAAGTAGGGTTATGAAAGGAGAGAAATGGATGGAGAAGAAGGAGAAGGAAGATCATAATATTCATAGGCTTTTTGTGTTGCCTATCATTCAAGTCTTGCAGCGTGCCCCGGTGCCACCGTCCGGTCGCAATCCGTGCACCAACATTCCCGGCCAAAGCAACGGTCGATGCACTCTCCAGACGATGAATGTTGCTGGTGGTCGGTTCGTTGTTCATGCACCGCCTGCCATCCCCAACTCTGCTCTCGTCGTTGACTCCGCTGCTCAAAGCTCTTGA

mRNA sequence

ATGGAGGCAAGTAGGGTTATGAAAGGAGAGAAATGGATGGAGAAGAAGGAGAAGGAAGATCATAATATTCATAGGCTTTTTGTGTTGCCTATCATTCAAGTCTTGCAGCGTGCCCCGGTGCCACCGTCCGGTCGCAATCCGTGCACCAACATTCCCGGCCAAAGCAACGGTCGATGCACTCTCCAGACGATGAATGTTGCTGGTGGTCGGTTCGTTGTTCATGCACCGCCTGCCATCCCCAACTCTGCTCTCGTCGTTGACTCCGCTGCTCAAAGCTCTTGA

Coding sequence (CDS)

ATGGAGGCAAGTAGGGTTATGAAAGGAGAGAAATGGATGGAGAAGAAGGAGAAGGAAGATCATAATATTCATAGGCTTTTTGTGTTGCCTATCATTCAAGTCTTGCAGCGTGCCCCGGTGCCACCGTCCGGTCGCAATCCGTGCACCAACATTCCCGGCCAAAGCAACGGTCGATGCACTCTCCAGACGATGAATGTTGCTGGTGGTCGGTTCGTTGTTCATGCACCGCCTGCCATCCCCAACTCTGCTCTCGTCGTTGACTCCGCTGCTCAAAGCTCTTGA

Protein sequence

MEASRVMKGEKWMEKKEKEDHNIHRLFVLPIIQVLQRAPVPPSGRNPCTNIPGQSNGRCTLQTMNVAGGRFVVHAPPAIPNSALVVDSAAQSS
Homology
BLAST of Lsi05G009920 vs. ExPASy TrEMBL
Match: A0A0A0LCX8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G391390 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.1e-28
Identity = 71/93 (76.34%), Postives = 76/93 (81.72%), Query Frame = 0

Query: 1   MEASRVMKGEKWMEKKEKEDHNIHRLFVLPIIQVLQRAPVPPSGRNPCTNIPGQSNGRCT 60
           M  +RVMK EKWM K+EK DH++   FVLPIIQVLQRAPVPPSGRNPCT IPGQSNGRCT
Sbjct: 22  MVGARVMKVEKWM-KEEKNDHSV---FVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCT 81

Query: 61  LQTMNVAGGRFVVHAPPAIPNSALVVDSAAQSS 94
           LQTMNVAG  FV   PP IP+SAL VDS AQSS
Sbjct: 82  LQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 110

BLAST of Lsi05G009920 vs. ExPASy TrEMBL
Match: A0A6J1K3A7 (uncharacterized protein LOC111491306 OS=Cucurbita maxima OX=3661 GN=LOC111491306 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.3e-21
Identity = 67/95 (70.53%), Postives = 73/95 (76.84%), Query Frame = 0

Query: 1   MEASRVMKGEKWMEKKEKEDHNIHRLFVLPIIQVLQRAPVPPSGRNPCTNIPGQSNGRCT 60
           MEA+RVM GEKWM+ K+         FVLP IQVLQRAPVPPSGRNPC+ IPGQSNGRCT
Sbjct: 24  MEAARVMSGEKWMKAKQ------DMAFVLP-IQVLQRAPVPPSGRNPCSTIPGQSNGRCT 83

Query: 61  LQTMNVAG--GRFVVHAPPAIPNSALVVDSAAQSS 94
           LQTMNVAG  GRF V APPAI + A +  SAAQSS
Sbjct: 84  LQTMNVAGGPGRF-VQAPPAIHDPAPIA-SAAQSS 109

BLAST of Lsi05G009920 vs. ExPASy TrEMBL
Match: A0A6J1ET04 (uncharacterized protein LOC111437447 OS=Cucurbita moschata OX=3662 GN=LOC111437447 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 8.3e-21
Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 0

Query: 1   MEASRVMKGEKWMEKKEKEDHNIHRLFVLPIIQVLQRAPVPPSGRNPCTNIPGQSNGRCT 60
           MEA+RVM G KWM+ K+         FVLP IQVLQRAPVPPSGRNPC+ IPGQSNGRCT
Sbjct: 24  MEAARVMSGHKWMKAKQ------DIAFVLP-IQVLQRAPVPPSGRNPCSTIPGQSNGRCT 83

Query: 61  LQTMNVAG--GRFVVHAPPAIPNSALVVDSAAQSS 94
           LQTMNVAG  GRF V APPAI + A +  SAAQSS
Sbjct: 84  LQTMNVAGGPGRF-VQAPPAIHDPAPIA-SAAQSS 109

BLAST of Lsi05G009920 vs. ExPASy TrEMBL
Match: A0A6J1A8S9 (uncharacterized protein LOC110415777 OS=Herrania umbratica OX=108875 GN=LOC110415777 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.2e-12
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 31  IIQVLQRAPVPPSGRNPCTNIPGQSNGRCTLQTMNV--AGGRFVVHAPPAIPNSALVVDS 90
           I+Q LQR PVPPSG NPCTNIPG+++GRCTL  MNV   GG  + H PPA P+  LVVD 
Sbjct: 44  IVQSLQRGPVPPSGGNPCTNIPGRNHGRCTLSEMNVVGGGGGMLAHPPPAFPD--LVVDF 103

Query: 91  AAQSS 94
            A S+
Sbjct: 104 GAASA 106

BLAST of Lsi05G009920 vs. ExPASy TrEMBL
Match: A0A061F0W9 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026263 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 36/50 (72.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 31 IIQVLQRAPVPPSGRNPCTNIPGQSNGRCTLQTMNVA--GGRFVVHAPPA 79
          I+Q LQR PVPPSG NPCTNIPG+S GRCTL  MNVA  GG  V H PPA
Sbjct: 44 IVQSLQRGPVPPSGGNPCTNIPGRSRGRCTLSEMNVAGGGGGMVAHPPPA 93

BLAST of Lsi05G009920 vs. NCBI nr
Match: XP_022995941.1 (uncharacterized protein LOC111491306 [Cucurbita maxima])

HSP 1 Score: 112.1 bits (279), Expect = 2.6e-21
Identity = 67/95 (70.53%), Postives = 73/95 (76.84%), Query Frame = 0

Query: 1   MEASRVMKGEKWMEKKEKEDHNIHRLFVLPIIQVLQRAPVPPSGRNPCTNIPGQSNGRCT 60
           MEA+RVM GEKWM+ K+         FVLP IQVLQRAPVPPSGRNPC+ IPGQSNGRCT
Sbjct: 24  MEAARVMSGEKWMKAKQ------DMAFVLP-IQVLQRAPVPPSGRNPCSTIPGQSNGRCT 83

Query: 61  LQTMNVAG--GRFVVHAPPAIPNSALVVDSAAQSS 94
           LQTMNVAG  GRF V APPAI + A +  SAAQSS
Sbjct: 84  LQTMNVAGGPGRF-VQAPPAIHDPAPIA-SAAQSS 109

BLAST of Lsi05G009920 vs. NCBI nr
Match: KAG6606390.1 (hypothetical protein SDJN03_03707, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.3 bits (277), Expect = 4.5e-21
Identity = 67/95 (70.53%), Postives = 73/95 (76.84%), Query Frame = 0

Query: 1  MEASRVMKGEKWMEKKEKEDHNIHRLFVLPIIQVLQRAPVPPSGRNPCTNIPGQSNGRCT 60
          MEA+RVM GEKWM+ K+         FVLP IQVLQRAPVPPSGRNPC+ IPGQSNGRCT
Sbjct: 10 MEAARVMSGEKWMKAKQ------DIAFVLP-IQVLQRAPVPPSGRNPCSTIPGQSNGRCT 69

Query: 61 LQTMNVAGG--RFVVHAPPAIPNSALVVDSAAQSS 94
          LQTMNVAGG  RF V APPAI + A +  SAAQSS
Sbjct: 70 LQTMNVAGGPARF-VQAPPAIHDPAPIA-SAAQSS 95

BLAST of Lsi05G009920 vs. NCBI nr
Match: XP_022931191.1 (uncharacterized protein LOC111437447 [Cucurbita moschata])

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-20
Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 0

Query: 1   MEASRVMKGEKWMEKKEKEDHNIHRLFVLPIIQVLQRAPVPPSGRNPCTNIPGQSNGRCT 60
           MEA+RVM G KWM+ K+         FVLP IQVLQRAPVPPSGRNPC+ IPGQSNGRCT
Sbjct: 24  MEAARVMSGHKWMKAKQ------DIAFVLP-IQVLQRAPVPPSGRNPCSTIPGQSNGRCT 83

Query: 61  LQTMNVAG--GRFVVHAPPAIPNSALVVDSAAQSS 94
           LQTMNVAG  GRF V APPAI + A +  SAAQSS
Sbjct: 84  LQTMNVAGGPGRF-VQAPPAIHDPAPIA-SAAQSS 109

BLAST of Lsi05G009920 vs. NCBI nr
Match: XP_021283166.1 (uncharacterized protein LOC110415777 [Herrania umbratica])

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-11
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 31  IIQVLQRAPVPPSGRNPCTNIPGQSNGRCTLQTMNV--AGGRFVVHAPPAIPNSALVVDS 90
           I+Q LQR PVPPSG NPCTNIPG+++GRCTL  MNV   GG  + H PPA P+  LVVD 
Sbjct: 44  IVQSLQRGPVPPSGGNPCTNIPGRNHGRCTLSEMNVVGGGGGMLAHPPPAFPD--LVVDF 103

Query: 91  AAQSS 94
            A S+
Sbjct: 104 GAASA 106

BLAST of Lsi05G009920 vs. NCBI nr
Match: EOY11000.1 (Uncharacterized protein TCM_026263 [Theobroma cacao])

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-10
Identity = 36/50 (72.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 31 IIQVLQRAPVPPSGRNPCTNIPGQSNGRCTLQTMNVA--GGRFVVHAPPA 79
          I+Q LQR PVPPSG NPCTNIPG+S GRCTL  MNVA  GG  V H PPA
Sbjct: 44 IVQSLQRGPVPPSGGNPCTNIPGRSRGRCTLSEMNVAGGGGGMVAHPPPA 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LCX83.1e-2876.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G391390 PE=4 SV=1[more]
A0A6J1K3A71.3e-2170.53uncharacterized protein LOC111491306 OS=Cucurbita maxima OX=3661 GN=LOC111491306... [more]
A0A6J1ET048.3e-2169.47uncharacterized protein LOC111437447 OS=Cucurbita moschata OX=3662 GN=LOC1114374... [more]
A0A6J1A8S99.2e-1261.54uncharacterized protein LOC110415777 OS=Herrania umbratica OX=108875 GN=LOC11041... [more]
A0A061F0W91.0e-1072.00Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026263 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022995941.12.6e-2170.53uncharacterized protein LOC111491306 [Cucurbita maxima][more]
KAG6606390.14.5e-2170.53hypothetical protein SDJN03_03707, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022931191.11.7e-2069.47uncharacterized protein LOC111437447 [Cucurbita moschata][more]
XP_021283166.11.9e-1161.54uncharacterized protein LOC110415777 [Herrania umbratica][more]
EOY11000.12.1e-1072.00Uncharacterized protein TCM_026263 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592:SF5TRANSMEMBRANE PROTEINcoord: 2..92
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 2..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G009920.1Lsi05G009920.1mRNA