Lsi05G007980 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G007980
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr05: 11676225 .. 11685567 (-)
RNA-Seq Expression	Lsi05G007980
Synteny	Lsi05G007980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGTAGCTAGTGTGGTGGAGGTGGCTCATAAGGAGCGGTCACTACAAGCTCCCAAGGCACGTGTCATTTCGTCTGACCCAGTGGCTGTCAGACTACCAAACTGTCTTCTAGATGATGGTGAACGACACGAGAATGATTGTGTCGAGGATGAGCCTGTACATAAGAATGTCTCGGAAGAGGGCCATCTAGATGAGGATGTAGTTGACGAGGGCCTCCTGGATGACGTGGATGGTACTCGAACATGCGACCATGATGTGGAGGGTCGTGCCAAGAAGGTCAAGGTAGATGATACTGTACAAGAAGGTCACGTGAGCCACCCTAACTGGAGCGTAGAATTGAGACGGGTTGAAATTGGTATGAGGTCGGAGTTTGCAACCGTTAGGTCAGAGGTTGCAATCATGAGATCAGAGTTCACCGCTGGCAGGTTAGAATTCACTGACATCAAACGAGACCTGACAGCCATAATGGGATGTCTTAGGGAACTCACGAAGGTATGATCTTATTGTTTGTCCACATTAAATTGTCATTTTATCTTTCATTAATGTATTTACGTGCTACAGGAAAAGTATGTTCAGGAGAGGTCTGGTGGATCTCAGGATGACAAAGGCGACGATGACGGTGACGGCATGACATCTGACACAGCCACATCGAGCAGTGATCATGACATCTATCCTGGACAGACTTCGGGTCACGTCATAGACGACCATGAGGAGTTGGGAGCTGCTGGTCCCTTTGAGGCTCTTGATGCAGCTGTGGATGAGGAGCATGGAGTATCTAGCTCAGAGGTTGCTTAGGAGGCAGTCAGTATACCAGCTGAGGATCAGAGAATATCTGGTTCGGGGGCTAATCCGAAGGTAGACAGTTGCCCACCTGAGGATCAAGGATTTTCTGACTTGGAGGTTGCTCTAGAGGCAGACAATTGCCCAACTGATGATCAGGGAGTATCTGGCTCGGGGGATGCTCTAGAGGCAGATAGTCCACCAGATGAGGAGCAGAGAGTATCTGGCTCGGGGCTGCTCCGAAGGCAGACAATTGCCCAGCTGAGGAGAATGGAGTATTTGGCTTGGGGGCTGCTCCGGAGGTAGATAGTTGCCCAGTTGAGGAGCAGGAAGTATCTGGCTCAGGGGCTACTCTGGAGGCGGTAGTTCATATAATGGACGACGAAATCGACGACCCCGCCGATGACTAGACTGTCACTTCATCAGACCAGGAAGATTCTTCCAAGGTTAGTTTCATGATTTACTATGTGATTCATTTCAATTATAATCTGAGCCCAACCATTCACACATACCACAACACTTATCGTTCATGTAGGCAATAGACCCGGCCGAACCTTCAGTATATCAGAAAGTTTATCCAGCTGTCCAAGCAGAGCTGAAAAGACTAGAAGAAGCATGGGAACAAAATCGATTGGAAGTGAAGCAGGAGATGGAAGAGCTCGATGATATTCGATTCAAACTGTGGTGCGGGAAGTAATTCGACCGGTTCCCCTTGAAGAACCTGAGGCAAAGAGAAAGCAACGCGCGGACATGGGAGCTAGATAGTCCATATATTGAGCTAGACAAGAAGAAGCAAAAGCGACCAAAATGTTACAACCTGATGGTACGCATCCCAGTTCTGTTTGAACAACAGATGAAGGTGTGGATCGAGGACCCTCTCGTTGATCTGGAAAAGTCCCTTCGAAGGGCTGTGTTATCGATAAAATCGAAGGGGTGGTGGATAAATCTCCTTCGTCCACACCAATTCATGGATGACGAGGTAATCAACCGTTTACATATCCGAATTTTTATTTTCATTTTCATTGTTTATATTTTAGATGTATAAAAATTTATATTGCAGACGATGGATCTCTTGTTTGTGTTTCTGCGGAACAACTCGTGTATGGAAAATCTCATGTCGATCTTGCGCACAGTTTCACGACAATTGACCGGGTGGTTATGGTTAGTTATTACTACATGCTATATATTACTTATCATGCACTACTAGATGAAGTATGAATTTATGGTTTTTATGTCTTTTTCTTTCTTATACAGAACTTCTTCCATAAACCGAGTAAACTGTATAGTGAGTGGAAACGACGGGACCGAGTGAAAACATACACATGGGAAAAGGACAGGAGCCTATTGAAGTACGTGATGGGAGAAGTTACAGACTACACAATCCCGTGGGTGGTTGTTGATGTCGTCTACATGTCGTACAACATACTGAACCTCCATTGGATCTTGGTTAAGATTGATCTGGTTGTCGGTAAGCTGTTAGTTTGGGACTCCTTGAGGTCAATGACAACACGACTAGAACTGAAGGGTCACTTGGAGGTCATGCGAACAGTCGTTCCAGCACTACTTCAGAAGTGTGGGGTAATGGTGGTCCAGCCAAACCTCTCGCTTGATCCATGGACCGTCGAATGAGTCCAGAACATGCCACAACAAACGGGTAGTGGGGGCTATAGGATATTCTGTGCAAAGTTTTTTAGTATGTTGTCACTGGGTCCTCCATGTCTACCCTAACCCAGGACAATATACCTTTTTTTAGACATCAGTTTGCTGTACAAATATTTAAGAACAAAGCATTTTACTAGTATATCAGCTTATCGATTATTTTAATTGCATTTTGGTTGTTTTAATTTTATTGCACAGATTATGGTGGCAAACCCCCTCTCCCCCCACCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAAACCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAATAATAATAAAGGAAACAAACAAAATTAAAAATTAAGATGTTTGGAATAGACTTCAGAGTAATATACGGATATGGACTTGGAAACAACTGAAAAGGATTATTGGAAAAAAAAAAAGCAGAAGAAAGGTGTCTAACTCACATTCTGTCAAATTTTCCGTAAACGTTGACTTAGTTAACGTTTACGAGAAATTTCCCATAAACATTGACGTAAGTCAACACTCACGGGAAATTTGACAAAAGTCGGTTGATTCTTCATTCGAATCTGTCAAGTTTCCTGTAAACATTGACTTTGGTCAACGTTTACGAGAAATTTTTCGTCAACGTTTACGGGAAATTTGACAGAAGGTGAGCGAGCCAACTTTCTTCTACATTCTTTTTTCCAGTAATTCTTTTCAATTGTTTTCAAGTTCATATCCGCATATTACTATGAAGTCTATTCCAAACATCTTAATACAGACAACTTAATTTTCGTGAATTAATTTTCATTTATAAACATAGTACTCAGGTATTTCCAAACATAATACTCTGTGTAACGTGTAAGGGGCTACATAATCTTGGACTTAATTTGTTTGGAACAGCTAAAAGATACCAGAACGAATTGATTGGAACTTAGAAAAAAAAACAAATGATAAATGAATGGAAATATTTGTACATCGACTTTCATGAAACCCTAATCTATACCGTTTGCAGTGGTTGTCTGCAAGTTTTTTGGTTGTGGCCTCGCTGACCGTACCTTCGACTTCTATGAATTTGAACGACCTCACCTGCAGAGGGAATTCGAATCTCTTGACGATGATCAACTTGTGGAACCCTCATTGGTGGCAATATCTCCACTTCTTCATAGTAGTCTGGTCGCTTCCACTCAGACATAAGCCCAACCAGGAATATCGGTTCTGAATATCCACCGTAAACTGACTGTAAGTGATATGTCAGAGAGCAAAGGCTGTACGGATCGATGTTCCGGGCTTGAGCTGCAGCAATTGCATGGGAGCAAGGAATCTCATAGTAATCAAATTTTTTGCATGTATATGTCCTCACTTCCAAGTCGGTTACTTCATATTTGTAATGATCGATCGACCTAATTTCATGTCTTTTTTATATAAGTTTTGCTTTAGCAATTATTTCCTCACCAATAGTTAGGAAGCGTTAACTGTATACCCACATAATACTCTCGACACCGGTAAAACCAATCTTGTAACAAACCTCGTATGTGATCAAGGAACTTGGTAATTGGTAGCGTCCGAGCATCCTTCAAAATGGCATTTAGGCTTTCACCAGCATTTGTCATCACCTGATCAAACCGCTTGCCACACTGAAATTCCCTGACCCATCATTCGAAACCGATCTCCTCTAAGTACTGAGTCGGCCCTCTAATCGGGCGAATCTCGGTCCACTGTGCTCGAAAATCGGTCTCATGGAATGCCTTGGCTACTAGAAAGAAGGCAGAGAGGATGACTTCTTTCTTAAAATGCTTGTGTTCAAGTTCTAGCTTAGGTGGTGTATGCAAAAACAGTGGAACGCAAACGAGAATACCCTGCAGATTGACTTGCCAATGCTCGGTTTCCTGCCCGATACAATTACAAGTTCTGTAACGGCCCCGATGGCATCCGTCTCACCGTCCACCACAGCAAATGCAACCGGGTATATCTGTCTATTCCCGTCAATTGAATTCGCACTTAACATGATACCCTTAAACTTTCTACGTAAATGTGTCCCATCGACGACCAGAACACGTCAAATATAGTTCAAAAAACCCTAATACACAGACCTAGTGCCATGAACACATACCTGAAATATTTGTCGTCGTCAAGCTTCAACGCATATAATGTACTGGGGTTCATTAACTTCAATGCTTCCCCATATGCATGTAAGTGGCCAAAGGAATCCTTCGGCCTACCTCGAACAAGTATCAAAGCCTCCTCCTTCGACCGTCAAGCCTTTTTGTAACTAATGCTCACACCATACTCTTTACGAATATCTTGCATTATATCTTTCGGCCTATACACCCTACTAACATTCATGAACTTGGACTTAATTAAATGTCCTATTACCTTGCTCCTGGCCTATTGGTGGTCATGATCTATTAGTTGACGAGAGCAAGTATGGACATTCATATACCTACTTATCTTAAAAAATGTAGATTCCTTAAGCTTTCAAGCCCTAATCCTCCATCCACACGTCTCATGTTTACATTTGACAACTAACAAGGACTTTGTGGATTTGTGAACCAGAGTTTCAAAATTTTGTCGCATGGCAAAGAGCGACAGAGAATACGCAAGCTCTTCCTTTGAAAGGTATATCTGTCCAAGCTCAATCTCAACAGCATCCTTACCGAATACCTGGTCTGTCACAACGATAGGCATCTCCGCTATAGACATCCCAGGCTGTGCAGAACTATTTCCAACCAACGGTGAGTCATCACCGACATATCCCTGATCGCCATCCTCCTCAATTTCGACCTCAAACTCTTCAACACCATCTCTCTCGTCATCCGTAGGTAATTGATAAGTATCATCACTTGATTGATAAGTATCAAGACCTATTACATGCTCTTCGTCACATTCATAATCTTCATCGTCGTCCTCAGATGCATTCTCATCCACATAACCCTCTTCATCTGGCACCCCTACACCTCCACCAACATTTCCCTATCCCACACCATATCTTGAGGACAACGGACCATCTTGTTCAAAATTATAGGGATCAAGGTACAAACTATCGTCATCTAGGTCATACGTGACTACGTTATTAGTTAAGGGGGTTAGTGAAGATACATGACAATAGAAATCATCTTATGATGGAAAATATTCATCAACTGAAGGTGGTGTGGGGTGATAAGGAGTTGGTTCAGGAAAATATTCATCAACGGAAGATGGTGTCGGGTGATAAGGGGGTGGGTATTCTTGTGCTATGTTATATGGAAAACTTGGTTGGTATGAGCAATTAGGGCTTTTCATGTCACTTCCCGATTCATCACTGTACCTGACGCTTGTTGATAAATAGATAGGAGACCTACATGCATCCTCTCCATTTAAAAAGAAACTTAGTTCCTGGTCATTTCTTATCAAATAGGTAGGAACTCTCGATCCAAAGTTGTATAGACATCTTAGAATGAGGTCATGATGGTTCGGGTCCGTCCCACTTATTTTATACAACTCTAACAAAAATTTCTCATACCTAATGTCATGTCTTACTTCCAAACCCCCAAGATTACCCCCTATGTAATCTCGTTCATCCTCCTTCCAAATATTATCATAGCAAACAAATATGCGAGGTATTCTGCAAGTAGATTTACTACAATCAATGGAAGAACAATAAAGAAAGAAGTAAACAAACCGACAAGCAAGGAAAAAAGAATGCAAAAAAAAAAATTCTCATTTTGCCATATTTCCCATAAGTCAACCGTACGGGAAATCTTGTCACTACCAAGATTTCCCGTAAGTTTGACTTATGGGAAATCTTGGTAGTGACAAGATTTCCTGTAGGGTTGACCTACGGGGAATCTTGGTAATGAATTTATTCGATCAGATTTCCCATAAGATTTTTCGTACGTTACTTTACAGGAAGTCTACGGGAAATCTTACAAAATGACCTTTTTCCATACATTTTTATTTAATTTACACATTGCTTCTTTTTTTTTTCCCATTTTTCACATTTTCTCCAAATGAGAAGGGTTGACAAATTTGATAATTTAGACAAATCTGCAACAAATCCCGCCAACAAAACTATTTTTTTTTTCAAAATCATTCGCTTAGAACAAAAATAGAAAACAAACAACAATTACCCCACGTGAATGACCCCACATGAATGAAAAAGAAGGTCGGAGAGAACCTACATACCTGATCTATCAAAAGGACGTCTCAAAAAGGAAAGAAACAAAATTGTCTGAAATTGGGACCCTCAAGTATAAGCCTTTTTTTATGAAAGTGAAAGTGAAAGCAAAATGGAAAATGACAAGTTTAAGGTTGTGAAGTGAAGTTGTAGGTCTAAAACTTGTGTTAGGTACGTTAGGTAACGTTTAAAGTTAAAGCAAATTGAATGAAAATTGAGGAAGGGGAGATGGAAAATAAATTGGGGGTATTTTCGTCATTTCACGCTGTAGGGCACACCACTGAAAATCTGAAAAGTTTAAAAAGATGTTAAAAAAAATAAGTTTTTAAAAAAGAGGTTACTTTTGTCCTAACAAAAACTTTTTGGGTTAGAAATAGCAATTTCCTAAAAAGTTTTTTTTTGAAAACAGAAAATAAAAGTTAAATTCACAAATACATTTACCTTTTTAATATGTTGACATTGTCAATTAATGGTAGACCTCTGGAAAATAAGCTTGCAAACAATGACTGATAATTTCATATATCACTGTTATAAATTAACAAAAAAAATATATACATACCATGGATAGAGAAAAAAGAAGTTAAATATTGCTGATATAACATTTTTATTTTATTGATGATTTACATCAACGAGAAACCTAAAAAATAATAAACTACCAGTGAATAAAGTCAAATTAATATCACTTATATACTAAGAAAAAAATACCTTTTTAGTCTCTAATTGCTATTTGTTAGCATGGGATATCATCTAAAAACCAATTGATAATTAGAAGACAAAAAGTTCATCTCAAAATCAACTAGCAATGGGTGGAGTAGCTCATTCATCTTATAAAGCGTGAGAGATCCCTTAATTTTTTCAATGTGAGATTCTCAACAGTTTCAATATGATACCTAGGCTTCAAAATGTTACTTTTACTCGTAAGTTTTGAGTTCAAATTCTATTTGGTCCCTAAGTTCCAAAATGTTACATTTTACTCTTGAGTTTTAAGTTTTCCATTTAGTCCCTATGTTTTAAAAATTTACACTTTTAACCTCGACTTTTTTTAATAAATATTCACTTTTGGTCCTTAGTGTTAATGTATATTAATTGACTTAGAAAAATTGAATTGATAATAATTAAATCAATTTTCACTAATTTTCCATCACTATTAGAACTAATTAAATATTTTTACATCATAATTATTTTTAATTAATTAACTAAAAGATAACGCCAAAAGAACATTAAGGAAAATTCAAGGGTAAACGTATAAAACATTAAAACCTAGAAACAAAATAAAAACTAAACTCAAAATTCAAAGATAAAATGTAGCATTCTAAAACTTATAGACTAAATGGAAAGTAAACTCTAAACTCATGAGTGTAATATTTTAAAATCTAAAAACCAAATAAAATCTAAATTCAAAACTTAAGTACCAAAAATGTATGTAGTATTAATATGGAACATAATAAACATAATAAAAAAGGAACAAAATTGTCATATTTGCAAAGGTGCTTGTCTCTTATGCTAGATTTGTTATTATTTTAGATAAAATAGTCAGATGCAATTGACCCTAAATTTTTTTATGGACCTTTATTTTTATTTTCAATTTTATTTTTTAGGTGACATGGAAAATAAACGTGCTTGGAGTTGAATAATTCTATCTAAATTCAAATTTTCCCAGAAAATACATTAGTTGACAGTCTTTAACATAAAAGAGAGAAGCCTAAGAGGCTCATTGACAGGAGTGGTTTTCTTTAACATAAATATAGATTGTTTGAACTGTGCCTACTGTACAAAACTGTGTCAAGTGAGATCCTGCAATTCATTTTTTTTTTTTTTTTTTTTGCAAGAATAACACTAATGTCCTTCCTATCCATCACTCTAAGAATCTAATCAAATAAGAAAAACATCAAATTTGTTTATGGTTTTCAGCCTGTAGCATGTACAAGAAAATTCCTCCTGCAACTGAGACATTGAGGGACTCGAAACCACCCGCCATTGGAATACTCAAAAGCTCACAAACCTGCCAGGATTTCTCAGACAGACCACTCCCTTCACAACCCAAAACCAAGCACAATGGAAAATCTTTCAAAGAATTTGCAAACTGTTGCGAAAGGACAGATACAGGTTTCGGTTCATTGCTTTCGGGATGGCCAGCCAGCATTTTCATTTGGAATTCATTTTTTAGAAACTCAAGATGATTCCAAGTGCCAGAGACTATTGGAAGCTGAAAAGATGCTCCTCGTGAGGCTCGGAGTGCCTTCTCGTTGA

mRNA sequence

ATGATTGGTGACATGGAAAATAAACCCTGTAGCATGTACAAGAAAATTCCTCCTGCAACTGAGACATTGAGGGACTCGAAACCACCCGCCATTGGAATACTCAAAAGCTCACAAACCTGCCAGGATTTCTCAGACAGACCACTCCCTTCACAACCCAAAACCAAGCACAATGGAAAATCTTTCAAAGAATTTGCAAACTGTTGCGAAAGGACAGATACAGAAACTCAAGATGATTCCAAGTGCCAGAGACTATTGGAAGCTGAAAAGATGCTCCTCGTGAGGCTCGGAGTGCCTTCTCGTTGA

Coding sequence (CDS)

ATGATTGGTGACATGGAAAATAAACCCTGTAGCATGTACAAGAAAATTCCTCCTGCAACTGAGACATTGAGGGACTCGAAACCACCCGCCATTGGAATACTCAAAAGCTCACAAACCTGCCAGGATTTCTCAGACAGACCACTCCCTTCACAACCCAAAACCAAGCACAATGGAAAATCTTTCAAAGAATTTGCAAACTGTTGCGAAAGGACAGATACAGAAACTCAAGATGATTCCAAGTGCCAGAGACTATTGGAAGCTGAAAAGATGCTCCTCGTGAGGCTCGGAGTGCCTTCTCGTTGA

Protein sequence

MIGDMENKPCSMYKKIPPATETLRDSKPPAIGILKSSQTCQDFSDRPLPSQPKTKHNGKSFKEFANCCERTDTETQDDSKCQRLLEAEKMLLVRLGVPSR

Homology

[Close]

BLAST of Lsi05G007980 vs. ExPASy TrEMBL
Match: A0A0A0L3H4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115070 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 78/89 (87.64%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 12  MYKKIPPATETLRDSKPPAIGILKSSQTCQDFSDRPLPSQPKTKHNGKSFKEFANCCERT 71
           MYKKIPPATETLRDSKPPAIG+LKSSQTCQDFSDRPLPSQPKTKHNGKSFKEF NC ERT
Sbjct: 1   MYKKIPPATETLRDSKPPAIGMLKSSQTCQDFSDRPLPSQPKTKHNGKSFKEFENCWERT 60

Query: 72  DTETQDDSKCQRLLEAEKMLLVRLGVPSR 101
           DT   DDSKCQ+LLEAEKML  +L VPSR
Sbjct: 61  DT---DDSKCQKLLEAEKMLHAKLEVPSR 86

The following BLAST results are available for this feature:

BLAST of Lsi05G007980 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G007980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3H4	1.1e-34	87.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115070 PE=4 SV=1	[more]

BLAST of Lsi05G007980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of Lsi05G007980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	SUPERFAMILY	47694	Cytochrome c oxidase subunit h	coord: 42..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G007980.1	Lsi05G007980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV