Lsi05G007780 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G007780
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Location	chr05: 11114312 .. 11116704 (-)
RNA-Seq Expression	Lsi05G007780
Synteny	Lsi05G007780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGAAGTGCCCCTCATGTTTACGCCTTCCCCAGTTTTCTCTTCATATAAAGCTTCGCCAGATCCTGAATCTTCCTCTCATTTCCCCATCAATGGCAGGATTTTTGTCAACTCTTAGGCGTCTGTACCTCACCATTTACAATTGGACTCTCTTCTTCGGATGGTAAGTTCTTCCCTCTTCTCAATCACTTCTCTTTCGATCTATCATCTATACTTCCCTGAACTCTTACTGGGTTTTTCAGGGTTCAGGTCTTCTATTTCTCTGTCAAGCAATTGAAGGAATCTGATCATCAACAGGTCTATAATGCCGTCGAACGCCCTCTTCAGTTTGCTCAAACTGCCGCTGTTTTAGAGGTATGCCCTTATGGTTTCTGGGTTTTCCAAATATGAATGCCAGAATCGTTTTTCCAACTACTTTATGAGCTGATTATCATGATACAGCTTAATTTGAAGTCCTTTCTAATTACGTCTCCCACTTCCTACTTCACAGATTCTCCATGGCCTCGTTGGTGAGCAATTTTTTATTCGTTCACAAATTTTGGTGAAGAAGATTTTCCTGCCCTGTTTTTACCTTTAAAAACCAAGTTGAATTGGGGTTTTGGTTTTTGTTTAATTAGGTTTGGTGAGATCCCCTGTAACAGCAACATTACCACAGATAGGTTCAAGATTGTATGTGACTTGGGGCATCTTATGGAGTTTCCCTGAGGTCGAATCCCTTTTGTTTTTTTCCCCCCATTTCAATTAATCATAAAATAGTGTTTATATTGTGATTTAAATTGATAATAAACTGATTAGTGTTTCGTTATGGTAGGTGAGGAATCATATACTTGTTACTTCCTTGGTCATCAGTTGGTCTATCACAGAGGCAAGTACCTAAGACCCCATAGCTTGTCATCTTTCTTTGATTTCAAACTTGATCTATTCACCTTTTCTTTTAGTGTACTTATTGGGTTCTTGTAACTTTGAGCATTAGTCTCTTTTGATTATATTAATGAAAAGTGTTTGTTTTATCCTTTAGAAAAAAAAGGACAACCACAAGAGATCTGTTCAAGATTTTTTTTAAAAAAATCTATGCATATCAGCTTTATGCGTTATTCAAATGGTGGATGATTTGTGATGTGTTTCCATCTTTTAGGTATTTTGCTCATTGTTAGCTTGTTTCTGATTGTTAAGTGTGCCATTCATTGTGTATTTTGTGTCATAAGGCTTTATTAGATAGATGGGTCATTTACTTATTCAACTTAATAGATTTAGAGGGAGTTTGACATGATTTGTAGATTAGTATAAACTGCTTTTCTTGAAGTATTTATAGAAAGTCTCGAAATATATCTCGAAATCAATCGAGCCATATAGTTTTCAAGATGTACCATGGAGCAAAATAAAAAAGCAGAGACTTTAACTTTTCTGGATAATTTCCATCTCTGGTTTCTGTCTTTTCCTCCAAAAGTTGAATGGTACAGTTAAAAGAAGATGCTCTGCTTGCAGATTATCCGCTATGCATTTTACGGCATGAAGGAGGTGTTTGGTTTTGCACCTTCATGGCTCCTATGGCTAAGGTACTGACTCTCATTTACGCAGCGAAAGAGATACAATTCGTAGTGTTATCTGCATCTGTGATACTAAAAATGTTTTCATTCATATCATGTAGGTATAGCACATTCCTATTGTTGTATGCAACTGGTATCAGTAGTGAAGTTGGTCTGATCTATCTGGCTCTTCCTTACATGAAGGTAAGAAATCCAATGTTATGTTACGTAACACGAAATGATAAAACATAATTCACTAATACGAATTCAATCCCAAACGACTGATCCCACCTCGGGCATGTTGCGTTGAAGTATATCGATAACGCACAGTTTCTTTAAGAAGTTTGTCATCATCTCAATAGCAGAAAATGATTATATTGAGTTGCTTTCAGGAATCTGGGAAGTATTCTTTTAGGATGCCAAACAAATGGAACTTCTCTTTCGATTACTTCTATGCAGCGATTCTTGTCCTCGCAATCTATGCACCAGGTTCGAGTGGTTCCGAGTTACTTGATCTGCTGTTGTTCTCTTGCTTCTATTTTCTTTTATTTGTTTCCTTTGGTAACTCTACAAAACACTTGCAGGAAGTCCTCATATGTATAGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAGAAAGAATGAAGGCTAATGTTTTCCTATTCACTTTGTCTCAATTCAGTGTACCTTTAGAATATTTATCTCTGATATTTATTTTTTATTTGCATAATCTTTTCAAGGACTTTGGCTCACCAGTTCAGTTTATAGTTGCAACTAAATATGATTTTTTTTTTTTTTCTTGTCAAAATTAAATTTATAAACACCACTCCCAGTGAGCATGGATTTTCA

mRNA sequence

GTTGAAGTGCCCCTCATGTTTACGCCTTCCCCAGTTTTCTCTTCATATAAAGCTTCGCCAGATCCTGAATCTTCCTCTCATTTCCCCATCAATGGCAGGATTTTTGTCAACTCTTAGGCGTCTGTACCTCACCATTTACAATTGGACTCTCTTCTTCGGATGGGTTCAGGTCTTCTATTTCTCTGTCAAGCAATTGAAGGAATCTGATCATCAACAGGTCTATAATGCCGTCGAACGCCCTCTTCAGTTTGCTCAAACTGCCGCTGTTTTAGAGCTTAATTTGAAGTCCTTTCTAATTACGTCTCCCACTTCCTACTTCACAGATTCTCCATGGCCTCGTTGGTTTGGTGAGATCCCCTGTAACAGCAACATTACCACAGATAGGTTCAAGATTATTATCCGCTATGCATTTTACGGCATGAAGGAGGTGTTTGGTTTTGCACCTTCATGGCTCCTATGGCTAAGGTATAGCACATTCCTATTGTTGTATGCAACTGGTATCAGTAGTGAAGTTGGTCTGATCTATCTGGCTCTTCCTTACATGAAGGAATCTGGGAAGTATTCTTTTAGGATGCCAAACAAATGGAACTTCTCTTTCGATTACTTCTATGCAGCGATTCTTGTCCTCGCAATCTATGCACCAGGAAGTCCTCATATGTATAGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAGAAAGAATGAAGGCTAATGTTTTCCTATTCACTTTGTCTCAATTCAGTGTACCTTTAGAATATTTATCTCTGATATTTATTTTTTATTTGCATAATCTTTTCAAGGACTTTGGCTCACCAGTTCAGTTTATAGTTGCAACTAAATATGATTTTTTTTTTTTTTCTTGTCAAAATTAAATTTATAAACACCACTCCCAGTGAGCATGGATTTTCA

Coding sequence (CDS)

ATGGCAGGATTTTTGTCAACTCTTAGGCGTCTGTACCTCACCATTTACAATTGGACTCTCTTCTTCGGATGGGTTCAGGTCTTCTATTTCTCTGTCAAGCAATTGAAGGAATCTGATCATCAACAGGTCTATAATGCCGTCGAACGCCCTCTTCAGTTTGCTCAAACTGCCGCTGTTTTAGAGCTTAATTTGAAGTCCTTTCTAATTACGTCTCCCACTTCCTACTTCACAGATTCTCCATGGCCTCGTTGGTTTGGTGAGATCCCCTGTAACAGCAACATTACCACAGATAGGTTCAAGATTATTATCCGCTATGCATTTTACGGCATGAAGGAGGTGTTTGGTTTTGCACCTTCATGGCTCCTATGGCTAAGGTATAGCACATTCCTATTGTTGTATGCAACTGGTATCAGTAGTGAAGTTGGTCTGATCTATCTGGCTCTTCCTTACATGAAGGAATCTGGGAAGTATTCTTTTAGGATGCCAAACAAATGGAACTTCTCTTTCGATTACTTCTATGCAGCGATTCTTGTCCTCGCAATCTATGCACCAGGAAGTCCTCATATGTATAGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAG

Protein sequence

MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVLELNLKSFLITSPTSYFTDSPWPRWFGEIPCNSNITTDRFKIIIRYAFYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWNFSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE

Homology

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BLAST of Lsi05G007780 vs. ExPASy Swiss-Prot
Match: Q7XSZ4 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2A PE=2 SV=2)

HSP 1 Score: 250.0 bits (637), Expect = 2.4e-65
Identity = 132/219 (60.27%), Postives = 155/219 (70.78%), Query Frame = 0


Query: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVL 60
           MAG  S +RRLYL++YNW +FFGW QV Y++V  L ES H+ VY AVERPLQFAQTAA L
Sbjct: 1   MAGVGSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFL 60

Query: 61  E-LNLKSFLITSPTSYFTDS-------------PWPRWFGEIPCNSNITTDRFKIIIRYA 120
           E L+    L+ SP S                   +P     I   S + +     IIRY+
Sbjct: 61  EILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYS 120

Query: 121 FYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWN 180
           F+GMKE FGFAPSWLLWLRYSTF++LY TGISSEVGLIY+ALPYMK S KY  RMPNKWN
Sbjct: 121 FFGMKEAFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKASEKYCLRMPNKWN 180

Query: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSK 206
           FSFD+FYA+IL LAIY PGSPHM++YML QR KAL+K+K
Sbjct: 181 FSFDFFYASILSLAIYVPGSPHMFTYMLAQRKKALAKAK 219

[Close]

BLAST of Lsi05G007780 vs. ExPASy Swiss-Prot
Match: Q5ZEJ0 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2B PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.7e-63
Identity = 128/219 (58.45%), Postives = 153/219 (69.86%), Query Frame = 0


Query: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVL 60
           M G  S +RRLYL++YNW +FFGW QV Y++V  L ES H+ VY AVERPLQFAQTAA L
Sbjct: 1   MTGVGSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFL 60

Query: 61  E-LNLKSFLITSPTSYFTDS-------------PWPRWFGEIPCNSNITTDRFKIIIRYA 120
           E L+    L+ SP S                   +P     I   S + +     IIRY+
Sbjct: 61  EILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYS 120

Query: 121 FYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWN 180
           F+GMKE FGFAPSWLLWLRYSTF++LY TGISSEVGLIY+ALPYMK + KY  RMPNKWN
Sbjct: 121 FFGMKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRMPNKWN 180

Query: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSK 206
           FSFD+ YA+IL LA+Y PGSPHM++YML QR KAL+K+K
Sbjct: 181 FSFDFSYASILSLAVYVPGSPHMFTYMLAQRKKALAKAK 219

[Close]

BLAST of Lsi05G007780 vs. ExPASy Swiss-Prot
Match: Q8VZB2 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana OX=3702 GN=PAS2 PE=1 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.8e-60
Identity = 127/221 (57.47%), Postives = 152/221 (68.78%), Query Frame = 0


Query: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVL 60
           MAGFLS +RR+YLT+YNW +F GW QV Y ++  LKE+ ++ VY+A+E+PLQ AQTAAVL
Sbjct: 1   MAGFLSVVRRVYLTLYNWIVFAGWAQVLYLAITTLKETGYENVYDAIEKPLQLAQTAAVL 60

Query: 61  E-LNLKSFLITSPTSYFTDSPWPRWF-------------GEIPCNSNITTDRFKIIIRYA 120
           E L+    L+ SP S        R F                   S + +     IIRY+
Sbjct: 61  EILHGLVGLVRSPVSATLPQIGSRLFLTWGILYSFPEVRSHFLVTSLVISWSITEIIRYS 120

Query: 121 FYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWN 180
           F+G KE  GFAPSW LWLRYS+FLLLY TGI+SEVGLIYLALP++K S  YS RMPN  N
Sbjct: 121 FFGFKEALGFAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILN 180

Query: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 208
           FSFD+FYA ILVLAIY PGSPHMY YML QR +ALSKSK+E
Sbjct: 181 FSFDFFYATILVLAIYVPGSPHMYRYMLGQRKRALSKSKRE 221

[Close]

BLAST of Lsi05G007780 vs. ExPASy Swiss-Prot
Match: Q9QY80 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Mus musculus OX=10090 GN=Hacd1 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-23
Identity = 69/213 (32.39%), Postives = 112/213 (52.58%), Query Frame = 0


Query: 5   LSTLRRLYLTIYNWTLFFGWVQVFYFSVK-QLKESDHQQVYNAVERPLQFAQTAAVLELN 64
           L  L   +LT YN  +  GW+ +    V+  +++  H+ +Y ++++ L+F QT A+LE+ 
Sbjct: 61  LGLLATAWLTFYNIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQTFALLEV- 120

Query: 65  LKSFLITSPTSYFTDS---------PWPRWFGEIPCNSNITTDRFKI------IIRYAFY 124
           +   +   PTS               W       P  +  +   F +      I RY+FY
Sbjct: 121 VHCLIGIVPTSVLVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVSWTVTEITRYSFY 180

Query: 125 GMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWNFS 184
               +    P ++ W RY+ F++LY  G++ E+  IY ALPY+K+SG +S R+PNK+N S
Sbjct: 181 TF-SLLDHLPHFIKWARYNLFIILYPVGVAGELLTIYAALPYVKKSGMFSVRLPNKYNVS 240

Query: 185 FDYFYAAILVLAIYAPGSPHMYSYMLVQRSKAL 202
           FDY+Y  ++ +A Y P  P +Y +ML QR K L
Sbjct: 241 FDYYYFLLITMASYIPLFPQLYFHMLRQRRKVL 271

[Close]

BLAST of Lsi05G007780 vs. ExPASy Swiss-Prot
Match: Q9N1R5 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Ovis aries OX=9940 GN=HACD1 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-23
Identity = 68/213 (31.92%), Postives = 113/213 (53.05%), Query Frame = 0


Query: 5   LSTLRRLYLTIYNWTLFFGWVQVFYFSVK-QLKESDHQQVYNAVERPLQFAQTAAVLELN 64
           L  L  ++LT YN  +  GW+ +    V+  +++  H+ +Y ++++ L+F QT A+LE+ 
Sbjct: 68  LGLLATIWLTFYNIAMTAGWLVLAIAMVRFYMEKGTHKGLYKSIQKTLKFFQTFALLEI- 127

Query: 65  LKSFLITSPTSYFTDS---------PWPRWFGEIPCNSNITTDRFKI------IIRYAFY 124
           +   +   PTS               W       P  +  +   F +      I RY+FY
Sbjct: 128 VHCLIGIVPTSVLVAGVQVSSRIFMVWLVTHSIKPIQNEESVVLFLVAWTVTEITRYSFY 187

Query: 125 GMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWNFS 184
               +    P ++ W RY+ F++LY  G++ E+  IY ALPY+K++G +S R+PNK+N S
Sbjct: 188 TF-SLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALPYVKKTGMFSIRLPNKYNVS 247

Query: 185 FDYFYAAILVLAIYAPGSPHMYSYMLVQRSKAL 202
           FDY+Y  ++ +A Y P  P +Y +ML QR K L
Sbjct: 248 FDYYYFLLITMASYIPLFPQLYFHMLRQRRKVL 278

[Close]

BLAST of Lsi05G007780 vs. ExPASy TrEMBL
Match: A0A1S3BT98 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucumis melo OX=3656 GN=LOC103493277 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.6e-80
Identity = 168/221 (76.02%), Postives = 177/221 (80.09%), Query Frame = 0


Query: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVL 60
           MAGFLSTLRRLYLTIYNWTLFFGWVQVFYF +KQLKES HQQVYNAVERPLQF+QTAAVL
Sbjct: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFCIKQLKESGHQQVYNAVERPLQFSQTAAVL 60

Query: 61  E-LNLKSFLITSPTS----------YFTDS---PWPRWFGEIPCNSNITTDRFKIIIRYA 120
           E L+    L+ SP +          Y T      +P     I   S + +     IIRYA
Sbjct: 61  EILHGLVGLVRSPVTATLPQIGSRLYVTWGILWSFPEVRNHILVTSLVVSWSITEIIRYA 120

Query: 121 FYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWN 180
           FYGMKE FGFAPS LLWLRYSTFLLLY TGISSEVGLIYLALPYMKESGKYS+RMPNKWN
Sbjct: 121 FYGMKETFGFAPSLLLWLRYSTFLLLYVTGISSEVGLIYLALPYMKESGKYSYRMPNKWN 180

Query: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 208
           FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE
Sbjct: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 221

[Close]

BLAST of Lsi05G007780 vs. ExPASy TrEMBL
Match: A0A0A0L3F8 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucumis sativus OX=3659 GN=Csa_3G114430 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.3e-79
Identity = 165/221 (74.66%), Postives = 176/221 (79.64%), Query Frame = 0


Query: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVL 60
           MAGFLSTLRRLYLT+YNWTLFFGWVQVFYF +KQLKES HQ VYNAVERPLQF+QTAAVL
Sbjct: 1   MAGFLSTLRRLYLTLYNWTLFFGWVQVFYFCIKQLKESGHQHVYNAVERPLQFSQTAAVL 60

Query: 61  E-LNLKSFLITSPTS----------YFTDS---PWPRWFGEIPCNSNITTDRFKIIIRYA 120
           E L+    L+ SP S          Y T      +P     I   S + +     IIRYA
Sbjct: 61  EILHGLVGLVRSPVSATLPQIGSRLYVTWGILWSFPEVRNHILVTSLVISWSITEIIRYA 120

Query: 121 FYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWN 180
           FYGMKE FGFAPS L+WLRYSTFLLLY TGISSE+GLIYLALPYMKESGKYS+RMPNKWN
Sbjct: 121 FYGMKETFGFAPSLLIWLRYSTFLLLYVTGISSEIGLIYLALPYMKESGKYSYRMPNKWN 180

Query: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 208
           FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE
Sbjct: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 221

[Close]

BLAST of Lsi05G007780 vs. ExPASy TrEMBL
Match: A0A6J1C5D0 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Momordica charantia OX=3673 GN=LOC111008101 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 5.6e-78
Identity = 161/221 (72.85%), Postives = 175/221 (79.19%), Query Frame = 0


Query: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVL 60
           MAG LST+RRLYLTIYNWTLF GWVQVFYFSVKQLKES H+QVYNAVE PLQ AQTAAVL
Sbjct: 1   MAGLLSTVRRLYLTIYNWTLFVGWVQVFYFSVKQLKESGHEQVYNAVECPLQLAQTAAVL 60

Query: 61  E-LNLKSFLITSPTS----------YFTDS---PWPRWFGEIPCNSNITTDRFKIIIRYA 120
           E L+    L+ SP +          Y T      +P     +  +S + +     IIRY+
Sbjct: 61  EILHGLVGLVRSPVTATLPQIGSRLYVTWGILWSFPEVRNHVLVSSLVISWSITEIIRYS 120

Query: 121 FYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWN 180
           FYGMKE FGFAPSWLLWLRYSTFLLLYATGI+SEVGLIYLALPYMKESGKY FRMPNKWN
Sbjct: 121 FYGMKEAFGFAPSWLLWLRYSTFLLLYATGITSEVGLIYLALPYMKESGKYCFRMPNKWN 180

Query: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 208
           FSFDYFYAAIL+L +YAPGSPHMYSYMLVQRSKALSKSKKE
Sbjct: 181 FSFDYFYAAILILVVYAPGSPHMYSYMLVQRSKALSKSKKE 221

[Close]

BLAST of Lsi05G007780 vs. ExPASy TrEMBL
Match: A0A6J1FQM5 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111447328 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.4e-76
Identity = 158/221 (71.49%), Postives = 174/221 (78.73%), Query Frame = 0


Query: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVL 60
           MAGFL+T+RRLYL+IYNWTLF GWVQVFYFSVKQLKES HQQVYNAVERPLQFAQTAAVL
Sbjct: 1   MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60

Query: 61  E-LNLKSFLITSPTS----------YFTDS---PWPRWFGEIPCNSNITTDRFKIIIRYA 120
           E L+    L+ SP +          Y T      +P     +  +S + +     IIRY+
Sbjct: 61  EILHGLVGLVRSPVTATLPQIGSRLYLTWGILWSFPEVRNHVLVSSLVISWSITEIIRYS 120

Query: 121 FYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWN 180
           FYGMKE FGFAPS LLWLRYSTFLLLY TGI+SEVGL+YLALPYMKESGKYSFRMPNKWN
Sbjct: 121 FYGMKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWN 180

Query: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 208
           FSFDY Y A+L+LAIY PGSPHMY YMLVQRSKALSKSKKE
Sbjct: 181 FSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 221

[Close]

BLAST of Lsi05G007780 vs. ExPASy TrEMBL
Match: A0A6J1FX62 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111447818 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.4e-76
Identity = 157/221 (71.04%), Postives = 174/221 (78.73%), Query Frame = 0


Query: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVL 60
           MAGFL+T+RRLYL+IYNWTLF GWVQVFYFSVKQLKES HQQVYNAVERPLQFAQTAAVL
Sbjct: 1   MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 60

Query: 61  EL--NLKSFLITSPTS---------YFTDS---PWPRWFGEIPCNSNITTDRFKIIIRYA 120
           E+   L  F+ +  T+         Y T      +P     +  +S + +     IIRY+
Sbjct: 61  EILHGLVGFVRSPVTATLPQIGSRLYLTWGILWSFPEVRNHVLVSSLVISWSITEIIRYS 120

Query: 121 FYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWN 180
           FYGMKE FGFAPS LLWLRYSTFLLLY TGI+SEVGL+YLALPYMKESGKYSFRMPNKWN
Sbjct: 121 FYGMKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWN 180

Query: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 208
           FSFDY Y A+L+LAIY PGSPHMY YMLVQRSKALSKSKKE
Sbjct: 181 FSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 221

[Close]

BLAST of Lsi05G007780 vs. NCBI nr
Match: XP_038903450.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Benincasa hispida])

HSP 1 Score: 317.4 bits (812), Expect = 9.2e-83
Identity = 172/221 (77.83%), Postives = 179/221 (81.00%), Query Frame = 0


Query: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVL 60
           MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFS+KQLKES HQQVYNAVERPLQFAQTAAVL
Sbjct: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSIKQLKESGHQQVYNAVERPLQFAQTAAVL 60

Query: 61  E-LNLKSFLITSPTS----------YFTDS---PWPRWFGEIPCNSNITTDRFKIIIRYA 120
           E L+    L+ SP +          Y T      +P     I   S + +     IIRYA
Sbjct: 61  EILHGLVGLVRSPVTATLPQIGSRLYVTWGILWSFPEVRNHILVTSLVISWSITEIIRYA 120

Query: 121 FYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWN 180
           FYGMKE FGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWN
Sbjct: 121 FYGMKEAFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWN 180

Query: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 208
           FSFDYFYAAILVLAIYAPGSPHMY YMLVQRSKALSKSKKE
Sbjct: 181 FSFDYFYAAILVLAIYAPGSPHMYRYMLVQRSKALSKSKKE 221

[Close]

BLAST of Lsi05G007780 vs. NCBI nr
Match: XP_008452179.1 (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cucumis melo])

HSP 1 Score: 308.9 bits (790), Expect = 3.3e-80
Identity = 168/221 (76.02%), Postives = 177/221 (80.09%), Query Frame = 0


Query: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVL 60
           MAGFLSTLRRLYLTIYNWTLFFGWVQVFYF +KQLKES HQQVYNAVERPLQF+QTAAVL
Sbjct: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFCIKQLKESGHQQVYNAVERPLQFSQTAAVL 60

Query: 61  E-LNLKSFLITSPTS----------YFTDS---PWPRWFGEIPCNSNITTDRFKIIIRYA 120
           E L+    L+ SP +          Y T      +P     I   S + +     IIRYA
Sbjct: 61  EILHGLVGLVRSPVTATLPQIGSRLYVTWGILWSFPEVRNHILVTSLVVSWSITEIIRYA 120

Query: 121 FYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWN 180
           FYGMKE FGFAPS LLWLRYSTFLLLY TGISSEVGLIYLALPYMKESGKYS+RMPNKWN
Sbjct: 121 FYGMKETFGFAPSLLLWLRYSTFLLLYVTGISSEVGLIYLALPYMKESGKYSYRMPNKWN 180

Query: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 208
           FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE
Sbjct: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 221

[Close]

BLAST of Lsi05G007780 vs. NCBI nr
Match: XP_004133747.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cucumis sativus] >KGN56303.1 hypothetical protein Csa_009835 [Cucumis sativus])

HSP 1 Score: 305.8 bits (782), Expect = 2.8e-79
Identity = 165/221 (74.66%), Postives = 176/221 (79.64%), Query Frame = 0


Query: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVL 60
           MAGFLSTLRRLYLT+YNWTLFFGWVQVFYF +KQLKES HQ VYNAVERPLQF+QTAAVL
Sbjct: 1   MAGFLSTLRRLYLTLYNWTLFFGWVQVFYFCIKQLKESGHQHVYNAVERPLQFSQTAAVL 60

Query: 61  E-LNLKSFLITSPTS----------YFTDS---PWPRWFGEIPCNSNITTDRFKIIIRYA 120
           E L+    L+ SP S          Y T      +P     I   S + +     IIRYA
Sbjct: 61  EILHGLVGLVRSPVSATLPQIGSRLYVTWGILWSFPEVRNHILVTSLVISWSITEIIRYA 120

Query: 121 FYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWN 180
           FYGMKE FGFAPS L+WLRYSTFLLLY TGISSE+GLIYLALPYMKESGKYS+RMPNKWN
Sbjct: 121 FYGMKETFGFAPSLLIWLRYSTFLLLYVTGISSEIGLIYLALPYMKESGKYSYRMPNKWN 180

Query: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 208
           FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE
Sbjct: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 221

[Close]

BLAST of Lsi05G007780 vs. NCBI nr
Match: XP_022136377.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Momordica charantia])

HSP 1 Score: 300.4 bits (768), Expect = 1.2e-77
Identity = 161/221 (72.85%), Postives = 175/221 (79.19%), Query Frame = 0


Query: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVL 60
           MAG LST+RRLYLTIYNWTLF GWVQVFYFSVKQLKES H+QVYNAVE PLQ AQTAAVL
Sbjct: 1   MAGLLSTVRRLYLTIYNWTLFVGWVQVFYFSVKQLKESGHEQVYNAVECPLQLAQTAAVL 60

Query: 61  E-LNLKSFLITSPTS----------YFTDS---PWPRWFGEIPCNSNITTDRFKIIIRYA 120
           E L+    L+ SP +          Y T      +P     +  +S + +     IIRY+
Sbjct: 61  EILHGLVGLVRSPVTATLPQIGSRLYVTWGILWSFPEVRNHVLVSSLVISWSITEIIRYS 120

Query: 121 FYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWN 180
           FYGMKE FGFAPSWLLWLRYSTFLLLYATGI+SEVGLIYLALPYMKESGKY FRMPNKWN
Sbjct: 121 FYGMKEAFGFAPSWLLWLRYSTFLLLYATGITSEVGLIYLALPYMKESGKYCFRMPNKWN 180

Query: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 208
           FSFDYFYAAIL+L +YAPGSPHMYSYMLVQRSKALSKSKKE
Sbjct: 181 FSFDYFYAAILILVVYAPGSPHMYSYMLVQRSKALSKSKKE 221

[Close]

BLAST of Lsi05G007780 vs. NCBI nr
Match: KAG6600692.1 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 295.8 bits (756), Expect = 2.9e-76
Identity = 158/221 (71.49%), Postives = 174/221 (78.73%), Query Frame = 0


Query: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVL 60
           MAGFL+T+RRLYL+IYNWTLF GWVQVFYFSVKQLKES HQQVYNAVERPLQFAQTAAVL
Sbjct: 90  MAGFLATIRRLYLSIYNWTLFVGWVQVFYFSVKQLKESGHQQVYNAVERPLQFAQTAAVL 149

Query: 61  E-LNLKSFLITSPTS----------YFTDS---PWPRWFGEIPCNSNITTDRFKIIIRYA 120
           E L+    L+ SP +          Y T      +P     +  +S + +     IIRY+
Sbjct: 150 EILHGLVGLVRSPVTATLPQIGSRLYLTWGILWSFPEVRNHVLVSSLVISWSITEIIRYS 209

Query: 121 FYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWN 180
           FYGMKE FGFAPS LLWLRYSTFLLLY TGI+SEVGL+YLALPYMKESGKYSFRMPNKWN
Sbjct: 210 FYGMKEAFGFAPSLLLWLRYSTFLLLYVTGITSEVGLVYLALPYMKESGKYSFRMPNKWN 269

Query: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 208
           FSFDY Y A+L+LAIY PGSPHMY YMLVQRSKALSKSKKE
Sbjct: 270 FSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 310

[Close]

BLAST of Lsi05G007780 vs. TAIR 10
Match: AT5G10480.1 (Protein-tyrosine phosphatase-like, PTPLA )

HSP 1 Score: 233.8 bits (595), Expect = 1.2e-61
Identity = 127/221 (57.47%), Postives = 152/221 (68.78%), Query Frame = 0


Query: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVL 60
           MAGFLS +RR+YLT+YNW +F GW QV Y ++  LKE+ ++ VY+A+E+PLQ AQTAAVL
Sbjct: 1   MAGFLSVVRRVYLTLYNWIVFAGWAQVLYLAITTLKETGYENVYDAIEKPLQLAQTAAVL 60

Query: 61  E-LNLKSFLITSPTSYFTDSPWPRWF-------------GEIPCNSNITTDRFKIIIRYA 120
           E L+    L+ SP S        R F                   S + +     IIRY+
Sbjct: 61  EILHGLVGLVRSPVSATLPQIGSRLFLTWGILYSFPEVRSHFLVTSLVISWSITEIIRYS 120

Query: 121 FYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRMPNKWN 180
           F+G KE  GFAPSW LWLRYS+FLLLY TGI+SEVGLIYLALP++K S  YS RMPN  N
Sbjct: 121 FFGFKEALGFAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRMPNILN 180

Query: 181 FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 208
           FSFD+FYA ILVLAIY PGSPHMY YML QR +ALSKSK+E
Sbjct: 181 FSFDFFYATILVLAIYVPGSPHMYRYMLGQRKRALSKSKRE 221

[Close]

BLAST of Lsi05G007780 vs. TAIR 10
Match: AT5G10480.3 (Protein-tyrosine phosphatase-like, PTPLA )

HSP 1 Score: 232.3 bits (591), Expect = 3.6e-61
Identity = 131/230 (56.96%), Postives = 158/230 (68.70%), Query Frame = 0


Query: 1   MAGFLSTLRRLYLTIYNWTLFFGWVQVFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVL 60
           MAGFLS +RR+YLT+YNW +F GW QV Y ++  LKE+ ++ VY+A+E+PLQ AQTAAVL
Sbjct: 1   MAGFLSVVRRVYLTLYNWIVFAGWAQVLYLAITTLKETGYENVYDAIEKPLQLAQTAAVL 60

Query: 61  E-LNLKSFLITSPTSYFTDSPWPR----W-----FGEIPCNSNITT-------DRFKI-- 120
           E L+    L+ SP S        R    W     F E+  +  +T+         F I  
Sbjct: 61  EILHGLVGLVRSPVSATLPQIGSRLFLTWGILYSFPEVRSHFLVTSLVISWSITEFPITT 120

Query: 121 ----IIRYAFYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKY 180
               IIRY+F+G KE  GFAPSW LWLRYS+FLLLY TGI+SEVGLIYLALP++K S  Y
Sbjct: 121 WIVEIIRYSFFGFKEALGFAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMY 180

Query: 181 SFRMPNKWNFSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKKE 208
           S RMPN  NFSFD+FYA ILVLAIY PGSPHMY YML QR +ALSKSK+E
Sbjct: 181 SVRMPNILNFSFDFFYATILVLAIYVPGSPHMYRYMLGQRKRALSKSKRE 230

[Close]

BLAST of Lsi05G007780 vs. TAIR 10
Match: AT5G10480.2 (Protein-tyrosine phosphatase-like, PTPLA )

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-49
Identity = 109/195 (55.90%), Postives = 130/195 (66.67%), Query Frame = 0


Query: 27  VFYFSVKQLKESDHQQVYNAVERPLQFAQTAAVLE-LNLKSFLITSPTSYFTDSPWPRWF 86
           V Y ++  LKE+ ++ VY+A+E+PLQ AQTAAVLE L+    L+ SP S        R F
Sbjct: 2   VLYLAITTLKETGYENVYDAIEKPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLF 61

Query: 87  -------------GEIPCNSNITTDRFKIIIRYAFYGMKEVFGFAPSWLLWLRYSTFLLL 146
                              S + +     IIRY+F+G KE  GFAPSW LWLRYS+FLLL
Sbjct: 62  LTWGILYSFPEVRSHFLVTSLVISWSITEIIRYSFFGFKEALGFAPSWHLWLRYSSFLLL 121

Query: 147 YATGISSEVGLIYLALPYMKESGKYSFRMPNKWNFSFDYFYAAILVLAIYAPGSPHMYSY 206
           Y TGI+SEVGLIYLALP++K S  YS RMPN  NFSFD+FYA ILVLAIY PGSPHMY Y
Sbjct: 122 YPTGITSEVGLIYLALPHIKTSEMYSVRMPNILNFSFDFFYATILVLAIYVPGSPHMYRY 181

Query: 207 MLVQRSKALSKSKKE 208
           ML QR +ALSKSK+E
Sbjct: 182 MLGQRKRALSKSKRE 196

[Close]

BLAST of Lsi05G007780 vs. TAIR 10
Match: AT5G59770.1 (Protein-tyrosine phosphatase-like, PTPLA )

HSP 1 Score: 58.2 bits (139), Expect = 9.4e-09
Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = 0


Query: 102 IIRYAFYGMKEVFGFAPSWLLWLRYSTFLLLYATGISSEVGLIYLALPYMKESGKYSFRM 161
           +IRY  Y      G  P WL +LRY+ F+++Y TG+  E+ ++Y ALPY+KE   Y+   
Sbjct: 164 MIRYPHYAF-TCLGRCPYWLTYLRYTGFIVIYPTGLVGELLIMYKALPYVKERNLYA--- 223

Query: 162 PNKWN-FSFDYFYAAILVLAIYAPGSPHMYSYMLVQRSKALSKSKK 207
            N ++ F F Y+     VL +Y      +Y  +  QR   L KSKK
Sbjct: 224 -NFFSVFPFSYYDFLWAVLLVYPFLWLKLYLQLFKQRKSKLGKSKK 264

The following BLAST results are available for this feature:

BLAST of Lsi05G007780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XSZ4	2.4e-65	60.27	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa...	[more]
Q5ZEJ0	1.7e-63	58.45	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa...	[more]
Q8VZB2	1.8e-60	57.47	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis t...	[more]
Q9QY80	2.2e-23	32.39	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Mus musculus OX=10090 GN...	[more]
Q9N1R5	2.9e-23	31.92	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Ovis aries OX=9940 GN=HA...	[more]

BLAST of Lsi05G007780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BT98	1.6e-80	76.02	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0L3F8	1.3e-79	74.66	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucumis sativus OX=3659 GN...	[more]
A0A6J1C5D0	5.6e-78	72.85	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Momordica charantia OX=367...	[more]
A0A6J1FQM5	1.4e-76	71.49	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662...	[more]
A0A6J1FX62	1.4e-76	71.04	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662...	[more]

BLAST of Lsi05G007780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903450.1	9.2e-83	77.83	very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Benincasa hisp...	[more]
XP_008452179.1	3.3e-80	76.02	PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cuc...	[more]
XP_004133747.1	2.8e-79	74.66	very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cucumis sativu...	[more]
XP_022136377.1	1.2e-77	72.85	very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Momordica char...	[more]
KAG6600692.1	2.9e-76	71.49	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2, partial [Cucurb...	[more]

BLAST of Lsi05G007780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10480.1	1.2e-61	57.47	Protein-tyrosine phosphatase-like, PTPLA	[more]
AT5G10480.3	3.6e-61	56.96	Protein-tyrosine phosphatase-like, PTPLA	[more]
AT5G10480.2	1.1e-49	55.90	Protein-tyrosine phosphatase-like, PTPLA	[more]
AT5G59770.1	9.4e-09	36.79	Protein-tyrosine phosphatase-like, PTPLA	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007482	Protein-tyrosine phosphatase-like, PTPLA	PFAM	PF04387	PTPLA	coord: 102..202 e-value: 8.3E-31 score: 106.9
IPR007482	Protein-tyrosine phosphatase-like, PTPLA	PANTHER	PTHR11035	PTPLA DOMAIN PROTEIN	coord: 1..207
None	No IPR available	PANTHER	PTHR11035:SF39	VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE	coord: 1..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G007780.1	Lsi05G007780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030497	fatty acid elongation
biological_process	GO:0030148	sphingolipid biosynthetic process
biological_process	GO:0042761	very long-chain fatty acid biosynthetic process
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0018812	3-hydroxyacyl-CoA dehydratase activity
molecular_function	GO:0102343	3-hydroxy-arachidoyl-CoA dehydratase activity
molecular_function	GO:0102344	3-hydroxy-behenoyl-CoA dehydratase activity
molecular_function	GO:0102345	3-hydroxy-lignoceroyl-CoA dehydratase activity
molecular_function	GO:0102158	very-long-chain 3-hydroxyacyl-CoA dehydratase activity