Lsi05G007220 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G007220
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCOX assembly mitochondrial protein
Locationchr05: 9828379 .. 9829372 (+)
RNA-Seq ExpressionLsi05G007220
SyntenyLsi05G007220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCCTCCTCTAACTTTGCATAAGCACCCGATGTGTGCTGAAGTGAGTACGAATCTTTGCCTTCTTAATATATATAGTTGAATTCCTTTAGATGATTGACTTGATCTTCATTTCATTTACCTTTCGTTTATGAATCAATTGTGTTGTTGTCTTGCAAGAAAATGGGAAAAAGAAATTTATATGTTGAAGCCCAGTTTATAACTCTTTTAATGTTGTAATCAAGTAAACTCTATTCAATCAAGCGCAGAATTATTGACAATCTAATTCAGTTTTATACTGATAGAAATCAAATGATGAGTTGTGGAGATCCATAGGTGGTAAAGTGCAGTGAACTACTGTTATGAAATTTCTTTAGGAGCTAAATTTTATCTACTAACTAGCAAGTAAGAAGCATATTGCTTTCTTTCCACTCAAAGTGAAGAGAATCTCTATAGATTTCCTTGGGGTTCATGTGTGAAATAAGTTCAAATTTAATAGTGACCACCCATTCGAGTTTGAGTTTCTTGACAACCAAATGTTGTAGAGTTCGGTTTTAAGCTAGCCTAAACACTTGAATATTAGGAAAAGAAAAGGTAAGAGAATCTTTACGTAGTATACTAAAGTCCAAACTTCCCTATTGTTATGCAGCTTTGTCATTGAAAACCTTTTTTTTTTAAAACTATTATTTTCCTTGCTCTTCTCTTCCATCACTTACAGATCATCGAGGAGTTTCAGAAGTGTCATCTAGATCATCCTGTTGCAAAATTTTTCGGTGAATGCACAGATCTCAAAATTAAGCTTGATCGATGTTTCAGGCAGGAAGTGAGTTTTGTGCTTCCACATTCATATTTTCCTTGCTTTCTTTTCAACTTTACCTGCTCCTTTTTCGTCATCTCAAATGGCACTTTCTATTCTTTGTTTACAGAAAGCTCTGAAACGAAAGGCAAACTTTGAACAGAGTAAAAAAATGAAGGAAAGGCTAGACGCTTTAAGAAAGGAAAACGCTTTATGA

mRNA sequence

ATGCATCCTCCTCTAACTTTGCATAAGCACCCGATGTGTGCTGAAATCATCGAGGAGTTTCAGAAGTGTCATCTAGATCATCCTGTTGCAAAATTTTTCGGTGAATGCACAGATCTCAAAATTAAGCTTGATCGATGTTTCAGGCAGGAAAAAGCTCTGAAACGAAAGGCAAACTTTGAACAGAGTAAAAAAATGAAGGAAAGGCTAGACGCTTTAAGAAAGGAAAACGCTTTATGA

Coding sequence (CDS)

ATGCATCCTCCTCTAACTTTGCATAAGCACCCGATGTGTGCTGAAATCATCGAGGAGTTTCAGAAGTGTCATCTAGATCATCCTGTTGCAAAATTTTTCGGTGAATGCACAGATCTCAAAATTAAGCTTGATCGATGTTTCAGGCAGGAAAAAGCTCTGAAACGAAAGGCAAACTTTGAACAGAGTAAAAAAATGAAGGAAAGGCTAGACGCTTTAAGAAAGGAAAACGCTTTATGA

Protein sequence

MHPPLTLHKHPMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFEQSKKMKERLDALRKENAL
Homology
BLAST of Lsi05G007220 vs. ExPASy Swiss-Prot
Match: Q6DHJ6 (COX assembly mitochondrial protein 2 homolog OS=Danio rerio OX=7955 GN=cmc2 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 0

Query: 1  MHPPLTLHKH-PMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANF 60
          MHP L+ H H   C ++I   ++CH +H V KFFG C D+   +  C R+E   KR+ + 
Sbjct: 1  MHPDLSPHLHTDECNQLITLLKQCHKEHNVLKFFGTCNDMDRAMRECLRKEYQTKRERSK 60

Query: 61 EQSKKMKERLDALRKEN 77
            +++M+ RL    KE+
Sbjct: 61 AHAEEMRRRLKEQPKEH 77

BLAST of Lsi05G007220 vs. ExPASy Swiss-Prot
Match: Q2NKR3 (COX assembly mitochondrial protein 2 homolog OS=Bos taurus OX=9913 GN=CMC2 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.7e-06
Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 0

Query: 1  MHPPLTLHKH-PMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANF 60
          MHP L+ H H   C  +I   ++CH +H + KFFG C DL  ++ +C + E   KR  + 
Sbjct: 1  MHPDLSPHLHTEECNVLINLLKECHKNHSILKFFGHCNDLDREMRKCLKNEYMEKRNKSR 60

Query: 61 EQSKKMKERL 70
          E    M++RL
Sbjct: 61 ELGNAMRKRL 70

BLAST of Lsi05G007220 vs. ExPASy Swiss-Prot
Match: B5FXK1 (COX assembly mitochondrial protein 2 homolog OS=Taeniopygia guttata OX=59729 GN=CMC2 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.1e-06
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 0

Query: 1  MHPPLTLHKH-PMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANF 60
          MHP L+ H H   C  II   +KCH +H V KFFG C D+  ++ +C ++E    R+ N 
Sbjct: 1  MHPDLSPHLHTEECNLIISLLKKCHKEHNVLKFFGHCNDIDREMRKCLKKEFEENRRRNR 60

Query: 61 EQSKKM 66
          E+ +++
Sbjct: 61 EKRQRI 66

BLAST of Lsi05G007220 vs. ExPASy Swiss-Prot
Match: Q8K199 (COX assembly mitochondrial protein 2 homolog OS=Mus musculus OX=10090 GN=Cmc2 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.0e-05
Identity = 25/70 (35.71%), Postives = 39/70 (55.71%), Query Frame = 0

Query: 1  MHPPLTLHKH-PMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANF 60
          MHP L+ H H   C  +I   ++CH +H + KFFG C DL  ++ +C + E + +R  + 
Sbjct: 1  MHPDLSPHLHTEECNVLINLLKECHKNHNILKFFGHCNDLDREMRKCLKNEYSERRTRSR 60

Query: 61 EQSKKMKERL 70
          E    M+ RL
Sbjct: 61 EHGAAMRRRL 70

BLAST of Lsi05G007220 vs. ExPASy Swiss-Prot
Match: O74347 (COX assembly mitochondrial protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cmc1 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.9e-05
Identity = 24/78 (30.77%), Postives = 43/78 (55.13%), Query Frame = 0

Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHP L ++    CA++I   ++CH      KFFGEC  +K +L  C  +++  K + N E
Sbjct: 1  MHPHLDVNNQKQCADLIRALEECH--KSFGKFFGECNTIKYELKACLTKDRNDKARLNRE 60

Query: 61 QSKKMKERLDALRKENAL 79
           ++  K+ ++  RK+  +
Sbjct: 61 NARMRKKVIEENRKKEEI 76

BLAST of Lsi05G007220 vs. ExPASy TrEMBL
Match: A0A6J1JAI2 (COX assembly mitochondrial protein OS=Cucurbita maxima OX=3661 GN=LOC111482746 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 7.6e-36
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0

Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLHKHPMCAEIIEEFQKCHLDHP+AKF GECTDLKIKLDRCFRQEKALKRKANFE
Sbjct: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPIAKFLGECTDLKIKLDRCFRQEKALKRKANFE 60

Query: 61 QSKKMKERLDALRKENAL 79
          QSKKMKERLDALRKENAL
Sbjct: 61 QSKKMKERLDALRKENAL 78

BLAST of Lsi05G007220 vs. ExPASy TrEMBL
Match: A0A6J1FQL3 (COX assembly mitochondrial protein OS=Cucurbita moschata OX=3662 GN=LOC111447555 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.2e-35
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0

Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLHKHPMCAEIIEEFQKCHLDHP+ KF GECTDLKIKLDRCFRQEKALKRKANFE
Sbjct: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPIGKFLGECTDLKIKLDRCFRQEKALKRKANFE 60

Query: 61 QSKKMKERLDALRKENAL 79
          QSKKMKERLDALRKENAL
Sbjct: 61 QSKKMKERLDALRKENAL 78

BLAST of Lsi05G007220 vs. ExPASy TrEMBL
Match: A0A1S3BTB7 (COX assembly mitochondrial protein OS=Cucumis melo OX=3656 GN=LOC103493308 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.8e-35
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0

Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLHKHPMCAEIIE+FQKCH+DHPV KFFGECTDLKIKLD+CFRQEKALKRKANFE
Sbjct: 1  MHPPLTLHKHPMCAEIIEQFQKCHIDHPVGKFFGECTDLKIKLDQCFRQEKALKRKANFE 60

Query: 61 QSKKMKERLDALRKENAL 79
          QSKKMKERLDALRKENAL
Sbjct: 61 QSKKMKERLDALRKENAL 78

BLAST of Lsi05G007220 vs. ExPASy TrEMBL
Match: A0A6J1C4A0 (COX assembly mitochondrial protein OS=Momordica charantia OX=3673 GN=LOC111008138 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.5e-35
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0

Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLHKHPMCAEIIE+FQKCH+DHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE
Sbjct: 1  MHPPLTLHKHPMCAEIIEQFQKCHVDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE 60

Query: 61 QSKKMKERLDALRKENAL 79
          QSKKMKERL ALRKEN+L
Sbjct: 61 QSKKMKERLQALRKENSL 78

BLAST of Lsi05G007220 vs. ExPASy TrEMBL
Match: A0A2R6Q6N5 (COX assembly mitochondrial protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc21301 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.7e-33
Identity = 69/77 (89.61%), Postives = 75/77 (97.40%), Query Frame = 0

Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLT+H+HPMCAEIIE+FQKCHLDHP+AKFFGECTDLKIKLDRCFRQEKALKRKANFE
Sbjct: 1  MHPPLTIHRHPMCAEIIEQFQKCHLDHPIAKFFGECTDLKIKLDRCFRQEKALKRKANFE 60

Query: 61 QSKKMKERLDALRKENA 78
          +SKK+KERL A RKENA
Sbjct: 61 ESKKLKERLQAFRKENA 77

BLAST of Lsi05G007220 vs. NCBI nr
Match: XP_038905183.1 (COX assembly mitochondrial protein 2 homolog [Benincasa hispida])

HSP 1 Score: 160.2 bits (404), Expect = 7.1e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLHKHPMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE
Sbjct: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE 60

Query: 61 QSKKMKERLDALRKENA 78
          QSKKMKERLDALRKENA
Sbjct: 61 QSKKMKERLDALRKENA 77

BLAST of Lsi05G007220 vs. NCBI nr
Match: XP_022984448.1 (COX assembly mitochondrial protein 2 homolog [Cucurbita maxima] >XP_023539121.1 COX assembly mitochondrial protein 2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.1 bits (401), Expect = 1.6e-35
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0

Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLHKHPMCAEIIEEFQKCHLDHP+AKF GECTDLKIKLDRCFRQEKALKRKANFE
Sbjct: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPIAKFLGECTDLKIKLDRCFRQEKALKRKANFE 60

Query: 61 QSKKMKERLDALRKENAL 79
          QSKKMKERLDALRKENAL
Sbjct: 61 QSKKMKERLDALRKENAL 78

BLAST of Lsi05G007220 vs. NCBI nr
Match: XP_004133729.1 (COX assembly mitochondrial protein 2 homolog [Cucumis sativus] >XP_011650575.1 COX assembly mitochondrial protein 2 homolog [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 2.7e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0

Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLHKHPMCAEIIE+FQKCH+DHPV KFFGECTDLKIKLDRCFRQEKALKRKANFE
Sbjct: 1  MHPPLTLHKHPMCAEIIEQFQKCHIDHPVGKFFGECTDLKIKLDRCFRQEKALKRKANFE 60

Query: 61 QSKKMKERLDALRKENAL 79
          QSKKMKERLDALRKENAL
Sbjct: 61 QSKKMKERLDALRKENAL 78

BLAST of Lsi05G007220 vs. NCBI nr
Match: XP_022942557.1 (COX assembly mitochondrial protein 2 homolog [Cucurbita moschata])

HSP 1 Score: 157.5 bits (397), Expect = 4.6e-35
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0

Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLHKHPMCAEIIEEFQKCHLDHP+ KF GECTDLKIKLDRCFRQEKALKRKANFE
Sbjct: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPIGKFLGECTDLKIKLDRCFRQEKALKRKANFE 60

Query: 61 QSKKMKERLDALRKENAL 79
          QSKKMKERLDALRKENAL
Sbjct: 61 QSKKMKERLDALRKENAL 78

BLAST of Lsi05G007220 vs. NCBI nr
Match: XP_008452227.1 (PREDICTED: COX assembly mitochondrial protein 2 homolog [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 7.8e-35
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 0

Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLHKHPMCAEIIE+FQKCH+DHPV KFFGECTDLKIKLD+CFRQEKALKRKANFE
Sbjct: 1  MHPPLTLHKHPMCAEIIEQFQKCHIDHPVGKFFGECTDLKIKLDQCFRQEKALKRKANFE 60

Query: 61 QSKKMKERLDALRKENAL 79
          QSKKMKERLDALRKENAL
Sbjct: 61 QSKKMKERLDALRKENAL 78

BLAST of Lsi05G007220 vs. TAIR 10
Match: AT4G21192.1 (Cytochrome c oxidase biogenesis protein Cmc1-like )

HSP 1 Score: 137.1 bits (344), Expect = 6.0e-33
Identity = 61/75 (81.33%), Postives = 70/75 (93.33%), Query Frame = 0

Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLT H+HPMC EIIEEFQKCH+DHP+ KFFGECT+LK+KLDRCFRQEKA+KRK NFE
Sbjct: 1  MHPPLTPHRHPMCLEIIEEFQKCHIDHPIGKFFGECTELKVKLDRCFRQEKAVKRKVNFE 60

Query: 61 QSKKMKERLDALRKE 76
          QSKK++ERL A+RKE
Sbjct: 61 QSKKLQERLKAIRKE 75

BLAST of Lsi05G007220 vs. TAIR 10
Match: AT4G21192.2 (Cytochrome c oxidase biogenesis protein Cmc1-like )

HSP 1 Score: 137.1 bits (344), Expect = 6.0e-33
Identity = 61/75 (81.33%), Postives = 70/75 (93.33%), Query Frame = 0

Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPVAKFFGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLT H+HPMC EIIEEFQKCH+DHP+ KFFGECT+LK+KLDRCFRQEKA+KRK NFE
Sbjct: 1  MHPPLTPHRHPMCLEIIEEFQKCHIDHPIGKFFGECTELKVKLDRCFRQEKAVKRKVNFE 60

Query: 61 QSKKMKERLDALRKE 76
          QSKK++ERL A+RKE
Sbjct: 61 QSKKLQERLKAIRKE 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q6DHJ61.2e-0636.36COX assembly mitochondrial protein 2 homolog OS=Danio rerio OX=7955 GN=cmc2 PE=3... [more]
Q2NKR34.7e-0637.14COX assembly mitochondrial protein 2 homolog OS=Bos taurus OX=9913 GN=CMC2 PE=3 ... [more]
B5FXK16.1e-0637.88COX assembly mitochondrial protein 2 homolog OS=Taeniopygia guttata OX=59729 GN=... [more]
Q8K1991.0e-0535.71COX assembly mitochondrial protein 2 homolog OS=Mus musculus OX=10090 GN=Cmc2 PE... [more]
O743473.9e-0530.77COX assembly mitochondrial protein 1 OS=Schizosaccharomyces pombe (strain 972 / ... [more]
Match NameE-valueIdentityDescription
A0A6J1JAI27.6e-3697.44COX assembly mitochondrial protein OS=Cucurbita maxima OX=3661 GN=LOC111482746 P... [more]
A0A6J1FQL32.2e-3596.15COX assembly mitochondrial protein OS=Cucurbita moschata OX=3662 GN=LOC111447555... [more]
A0A1S3BTB73.8e-3594.87COX assembly mitochondrial protein OS=Cucumis melo OX=3656 GN=LOC103493308 PE=3 ... [more]
A0A6J1C4A06.5e-3594.87COX assembly mitochondrial protein OS=Momordica charantia OX=3673 GN=LOC11100813... [more]
A0A2R6Q6N52.7e-3389.61COX assembly mitochondrial protein OS=Actinidia chinensis var. chinensis OX=1590... [more]
Match NameE-valueIdentityDescription
XP_038905183.17.1e-36100.00COX assembly mitochondrial protein 2 homolog [Benincasa hispida][more]
XP_022984448.11.6e-3597.44COX assembly mitochondrial protein 2 homolog [Cucurbita maxima] >XP_023539121.1 ... [more]
XP_004133729.12.7e-3596.15COX assembly mitochondrial protein 2 homolog [Cucumis sativus] >XP_011650575.1 C... [more]
XP_022942557.14.6e-3596.15COX assembly mitochondrial protein 2 homolog [Cucurbita moschata][more]
XP_008452227.17.8e-3594.87PREDICTED: COX assembly mitochondrial protein 2 homolog [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT4G21192.16.0e-3381.33Cytochrome c oxidase biogenesis protein Cmc1-like [more]
AT4G21192.26.0e-3381.33Cytochrome c oxidase biogenesis protein Cmc1-like [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013892Cytochrome c oxidase biogenesis protein Cmc1-likePFAMPF08583Cmc1coord: 1..69
e-value: 1.5E-15
score: 57.0
IPR013892Cytochrome c oxidase biogenesis protein Cmc1-likePANTHERPTHR22977COX ASSEMBLY MITOCHONDRIAL PROTEINcoord: 1..77
NoneNo IPR availablePANTHERPTHR22977:SF7COX ASSEMBLY MITOCHONDRIAL PROTEINcoord: 1..77
NoneNo IPR availablePROSITEPS51808CHCHcoord: 10..54
score: 10.587782

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G007220.1Lsi05G007220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion