Lsi05G006870 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G006870
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein RRP5
Location	chr05: 9150084 .. 9152476 (+)
RNA-Seq Expression	Lsi05G006870
Synteny	Lsi05G006870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGAAATTTGGTGCGAAGTTACTTCAAGCTTCTTTTTTTTTCGTCTTTAGGGTTTTCGTTGTCAATCTCCGCAGCTCTCATCTCTCGGCGATGGCGAAGAACAGGAATAAGAAGAAGCGAAGTGGGCCTATTTCAATGGACGTAACTGAGAATACCGTTCACGAGCTCCCTCAAGGTACAATTTGGTTATTTGAAAAGGAATTATACAGAATAGTATCAGATAGAATGAGAATTGAATCCTCCAGATGTTTGTACTTGTCATTCCTTGTTCATTCTTGCTCTTTAAGTTATTTTAGAACTCTTCTTTGTTTTAATATTTGTTTTCCTTGAGTAGTTTTGAAGTTTAACTAACTTACGTTTCCCTTGAATCTATAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCACCCTCAGTTTGTAAGCTTCTACCTGGGAATTGTGGTTAATTTTTTATTTTTATGGTTTAGGATATAGTTTCACGCCAATTCATTCTCGTTTTTCAATTCATGTGTTCTCAGTTCCTATTTTTTTTTTTTTTTATCATTGGCTCTGTTGAATTGTTGTGTGCCGAGAGAATTGGCTTTCACTATTTCGCATGAAGAAACCTTAATCCCAAATTTGTTCGTTTCGGGCCGGATGAGGCTGAAAAAACTAGGGGAATAGGGCTAATATTGTAATGGACATAAGATTAAATTGAGCATGTATTAATGATCTTACCACAAAAAGTGGTGAATTAGCTCCCAGAAAACTTGTGGTTCCATACTACTAACCTTTCATATTTAGCCACATTACTATTGATCTTATTATTTTATTTAGTGGGTCACTTATAACTTTAAATGGTACATGGTTAAAGATTAATTAGAACTGTGTGAGAAATATTTCTTGACAAGGAAAAATGAGGAAAAACCTTCTATGGTCTACTTGGTAACCTGTGTTCAACTTTCTTAATTGTGAGAAAAACTTCGTCGGGTCAGAAAGTTCATTGGAATTCTATTTTTAGACCTTTCATCTAACCAAACGTGTGTGTGTTCTTTTTTACCCGAGAGTGTAGATTGTTTTTCATGTCTTTATATTTTCAGAATGACACCATGATAATTTTTATAGGCACTTGAGGAGAAGTCGTTGCATATAAAAGAAAATGAACTTACAAGATAAACGAAGTCATTTGAGGTACTAGGACCCTCCCCTCTTGAGATACCATTCAAGTCCTCATTCACTAACCGAATTTCAACTCCTTCCTTTCCCACTCCCTCTAATTATAACCAAATACTCTTAACAACTTCCCTAACCAATTGGTAATTAGATTACTAATATATCCCCTAATTCCCCTAATAACCATCCTATCAATGTAATTTCCCACGAATGTATGAAGCATCTGATCAACCCTTCTGATTCGTTTCTAGCCACTTAAACTTATCAATAAAGCCAGTAAATCAAGGATGGAAGGAGTGCCGAAGCTTTCCTATCAATGTAGCCCTCGATATTTTTATCTTTCCTGCAGTAGTAAAATGTAAAATGATACTATTGGTTTCAGTTTATTGAAGCCACGCATACATTCAAAGTGGTAGGATCTACAATGTTCAACTTTTAATGCCTTAAGGATTATGATTGAAACCCAACCATGTTTTCAAAGACTTTCTTCTCCTTTGTGCGCCTGCTTAGCCTTTAAATATAGAATCTTCTGAATCCAAGTCGTTGACTTGGTTGGGGAATGGTTGGATAGTATGCATATGTTAATACTATCCAAACAAAAGGAAAATAAGTTATTTGGGTTAGATTGTCTGTCTGTGTCTTAATCTCCATTTTGAATACTAGTGGATTGGATTGCTATTTAACTTTAGCTGGTTTTCTAAATTTGGTTCTTATTGCAATTTTAAGCTGCCTTTTTCCCTGATTATTACTCTTTGTTGTGACAGAAAGTCGAAAAAGGGAAGGCCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATGGTGAAGGCCATATCTAAGAGCGAGCAGTCGACGGAGAAAATTTTGAAAAATCAGAGCAAAACTACCAGAATACAATCTGCAAAAACATTGTATGAATGACAGTATCATTTTTATACAAATGTTTCCTTAAATTGTAAAATTTATTTATTTTTGTTCCCTTCATAGGCTTTTTATGTTACTTTCTCCACTCACCATTAAGTATTCAATTGTATCAACCCTGCAACTTCTAAGTTGCAAATTATTTGTGAATTCAAAGTTTTTTTTTTTTTAAAAAAACGAGGAGATTATGGGAGATTTTGTCATGTGGCGAATCACCTACAATGGCTATTGGTGCAATGTAGAATGTGCTCAAGTATTTAACTTTGGTTTATTTTGATGTTTTGTAGTTTATGTACTTTTTGAC

mRNA sequence

CCGAAATTTGGTGCGAAGTTACTTCAAGCTTCTTTTTTTTTCGTCTTTAGGGTTTTCGTTGTCAATCTCCGCAGCTCTCATCTCTCGGCGATGGCGAAGAACAGGAATAAGAAGAAGCGAAGTGGGCCTATTTCAATGGACGTAACTGAGAATACCGTTCACGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCACCCTCAGTTTAAAGTCGAAAAAGGGAAGGCCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATGGTGAAGGCCATATCTAAGAGCGAGCAGTCGACGGAGAAAATTTTGAAAAATCAGAGCAAAACTACCAGAATACAATCTGCAAAAACATTGTATGAATGACAGTATCATTTTTATACAAATGTTTCCTTAAATTGTAAAATTTATTTATTTTTGTTCCCTTCATAGGCTTTTTATGTTACTTTCTCCACTCACCATTAAGTATTCAATTGTATCAACCCTGCAACTTCTAAGTTGCAAATTATTTGTGAATTCAAAGTTTTTTTTTTTTTAAAAAAACGAGGAGATTATGGGAGATTTTGTCATGTGGCGAATCACCTACAATGGCTATTGGTGCAATGTAGAATGTGCTCAAGTATTTAACTTTGGTTTATTTTGATGTTTTGTAGTTTATGTACTTTTTGAC

Coding sequence (CDS)

ATGGCGAAGAACAGGAATAAGAAGAAGCGAAGTGGGCCTATTTCAATGGACGTAACTGAGAATACCGTTCACGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCACCCTCAGTTTAAAGTCGAAAAAGGGAAGGCCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATGGTGAAGGCCATATCTAAGAGCGAGCAGTCGACGGAGAAAATTTTGAAAAATCAGAGCAAAACTACCAGAATACAATCTGCAAAAACATTGTATGAATGA

Protein sequence

MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE

Homology

[Close]

BLAST of Lsi05G006870 vs. ExPASy TrEMBL
Match: A0A1S3BUB2 (uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.7e-35
Identity = 87/99 (87.88%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKN 60
           MAKNRNKKKR G +SMDVTEN+VHELPQAMDVS S VHKPASG L LK KKGRPMKRSKN
Sbjct: 1   MAKNRNKKKRGGAVSMDVTENSVHELPQAMDVSASTVHKPASGALDLKLKKGRPMKRSKN 60

Query: 61  VRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE 100
           VRKTKA+ KAISKSEQS EKILKNQSKTTRIQSAKTLYE
Sbjct: 61  VRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

[Close]

BLAST of Lsi05G006870 vs. ExPASy TrEMBL
Match: A0A6J1EMH0 (uncharacterized protein LOC111435867 OS=Cucurbita moschata OX=3662 GN=LOC111435867 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.9e-34
Identity = 85/99 (85.86%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 1   MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKN 60
           MAKN+NKKKRSG ISMD+TENT  ELPQAMDVSESAVHKPASG L+LK KKGRPMKRSKN
Sbjct: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE 100
           VRKT A  KAISK+EQS EKILKNQSKTTRI SAKTLYE
Sbjct: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 99

[Close]

BLAST of Lsi05G006870 vs. ExPASy TrEMBL
Match: A0A6J1J4F8 (uncharacterized protein LOC111483316 OS=Cucurbita maxima OX=3661 GN=LOC111483316 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.9e-33
Identity = 85/99 (85.86%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 1   MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKN 60
           MAKN+N KKRSG ISMD+TENT HELPQAMDVSESAVHKPASG L+LK KKGRPMKRSKN
Sbjct: 1   MAKNKN-KKRSGAISMDITENTAHELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE 100
           VRKT A  KAISK+EQS EKILKNQSKTTRI SAKTLYE
Sbjct: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 98

[Close]

BLAST of Lsi05G006870 vs. ExPASy TrEMBL
Match: A0A6J1CP23 (uncharacterized protein LOC111012789 OS=Momordica charantia OX=3673 GN=LOC111012789 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.3e-24
Identity = 68/82 (82.93%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 16 MDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSE 75
          MD+TENTV +LPQAMDVSES VHKP SG L+LK +KGRPMKRS+NVRKTKAM KAI KSE
Sbjct: 1  MDLTENTVVDLPQAMDVSESGVHKPVSGGLNLKLRKGRPMKRSQNVRKTKAMAKAICKSE 60

Query: 76 QSTEKILKNQSKTTRIQSAKTL 98
          QS EKI+KNQSKTTRIQSAKTL
Sbjct: 61 QSAEKIMKNQSKTTRIQSAKTL 82

[Close]

BLAST of Lsi05G006870 vs. ExPASy TrEMBL
Match: A0A6A6MLZ5 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_025020 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.5e-24
Identity = 69/99 (69.70%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1   MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKN 60
           MAKNRNKKK++G +SMD+TE TV ++PQAMD SES V K ASG  + K  KGRPMKRSKN
Sbjct: 1   MAKNRNKKKKNGAVSMDITEPTVSDVPQAMDTSESVVQKSASGFPNRK-VKGRPMKRSKN 60

Query: 61  VRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE 100
           VRK KA+ KAISK+EQS EK+LKN+SKT R QSAK LY+
Sbjct: 61  VRKMKAVAKAISKNEQSVEKVLKNESKTARTQSAKLLYD 98

[Close]

BLAST of Lsi05G006870 vs. NCBI nr
Match: XP_038903593.1 (uncharacterized protein LOC120090147 [Benincasa hispida])

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 91/99 (91.92%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKN 60
           MAKNRNKKKRSGP+SMDVTENTVHELPQAMDVSESAVHKP SG L+LK KKGRPMKRSKN
Sbjct: 1   MAKNRNKKKRSGPVSMDVTENTVHELPQAMDVSESAVHKPTSGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE 100
           VRKTKAM KAISKSEQSTEKILKNQSKT RIQSAK LYE
Sbjct: 61  VRKTKAMAKAISKSEQSTEKILKNQSKTARIQSAKALYE 99

[Close]

BLAST of Lsi05G006870 vs. NCBI nr
Match: XP_008452291.1 (PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 7.6e-35
Identity = 87/99 (87.88%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKN 60
           MAKNRNKKKR G +SMDVTEN+VHELPQAMDVS S VHKPASG L LK KKGRPMKRSKN
Sbjct: 1   MAKNRNKKKRGGAVSMDVTENSVHELPQAMDVSASTVHKPASGALDLKLKKGRPMKRSKN 60

Query: 61  VRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE 100
           VRKTKA+ KAISKSEQS EKILKNQSKTTRIQSAKTLYE
Sbjct: 61  VRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

[Close]

BLAST of Lsi05G006870 vs. NCBI nr
Match: KAG6577394.1 (Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 85/99 (85.86%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 1   MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKN 60
           MAKN+NKKKRSG ISMD+TENT  ELPQAMDVSESAVHKPASG L+LK KKGRPMKRSKN
Sbjct: 278 MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 337

Query: 61  VRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE 100
           VRKT A  KAISK+EQS EKILKNQSKTTRI SAKTLYE
Sbjct: 338 VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 376

[Close]

BLAST of Lsi05G006870 vs. NCBI nr
Match: XP_022929206.1 (uncharacterized protein LOC111435867 [Cucurbita moschata] >KAG7015471.1 hypothetical protein SDJN02_23107 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 85/99 (85.86%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 1   MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKN 60
           MAKN+NKKKRSG ISMD+TENT  ELPQAMDVSESAVHKPASG L+LK KKGRPMKRSKN
Sbjct: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE 100
           VRKT A  KAISK+EQS EKILKNQSKTTRI SAKTLYE
Sbjct: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 99

[Close]

BLAST of Lsi05G006870 vs. NCBI nr
Match: XP_022985277.1 (uncharacterized protein LOC111483316 [Cucurbita maxima])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 85/99 (85.86%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 1   MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKN 60
           MAKN+N KKRSG ISMD+TENT HELPQAMDVSESAVHKPASG L+LK KKGRPMKRSKN
Sbjct: 1   MAKNKN-KKRSGAISMDITENTAHELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE 100
           VRKT A  KAISK+EQS EKILKNQSKTTRI SAKTLYE
Sbjct: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 98

[Close]

BLAST of Lsi05G006870 vs. TAIR 10
Match: AT4G27380.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 53/156 (33.97%), Postives = 67/156 (42.95%), Query Frame = 0


Query: 1   MAKNRNKKKRSGPISMDVTEN-TVHE-LPQAMDVSESAVHKPASGTLSLKS-KKGRP--- 60
           M K RNKK R    SMDV+E+ +V E  PQ MD +E+   K AS   SL S +KG+P   
Sbjct: 1   MTKKRNKKNRDEEASMDVSESQSVSEATPQVMDTTETGDGKLASRARSLMSTRKGKPMKR 60

Query: 61  ---------------------------------------------------MKRSKNVRK 100
                                                              MKR+KN RK
Sbjct: 61  TKIAMNMKAVAVAMDTTETGDVKLATETGDLKVATETGYLKLATLSRNPTNMKRTKNARK 120

The following BLAST results are available for this feature:

BLAST of Lsi05G006870 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G006870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BUB2	3.7e-35	87.88	uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=...	[more]
A0A6J1EMH0	6.9e-34	85.86	uncharacterized protein LOC111435867 OS=Cucurbita moschata OX=3662 GN=LOC1114358...	[more]
A0A6J1J4F8	5.9e-33	85.86	uncharacterized protein LOC111483316 OS=Cucurbita maxima OX=3661 GN=LOC111483316...	[more]
A0A6J1CP23	1.3e-24	82.93	uncharacterized protein LOC111012789 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6A6MLZ5	6.5e-24	69.70	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_025020 PE=4 SV=1	[more]

BLAST of Lsi05G006870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903593.1	1.6e-37	91.92	uncharacterized protein LOC120090147 [Benincasa hispida]	[more]
XP_008452291.1	7.6e-35	87.88	PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo]	[more]
KAG6577394.1	1.4e-33	85.86	Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_022929206.1	1.4e-33	85.86	uncharacterized protein LOC111435867 [Cucurbita moschata] >KAG7015471.1 hypothet...	[more]
XP_022985277.1	1.2e-32	85.86	uncharacterized protein LOC111483316 [Cucurbita maxima]	[more]

BLAST of Lsi05G006870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27380.1	1.3e-05	33.97	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..99
None	No IPR available	PANTHER	PTHR36385	OS07G0562900 PROTEIN	coord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G006870.1	Lsi05G006870.1	mRNA