Lsi05G006810 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G006810
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Cytochrome c-type biogenesis protein
Location	chr05: 9031660 .. 9032968 (-)
RNA-Seq Expression	Lsi05G006810
Synteny	Lsi05G006810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTGATGAGGATGCTGTAAAAAAAACCCAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCATAATGTTAGGTGTATTGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCAGATATTGCGATTCTCCTCAGAAAGGTATCAGTTATTTAGATTAACTCCAAGCTAAACAATTTAACCAAGACTCCGGTATTACAAATATAGTGTGAACAAATGGAATGGTACTCCTGTACTACTAGAAAATTTCCCAGGCTAGTACCAATGGATGTTGAAACTTGAAAGTTTCACAAAAGATGGTTCATGTAAAGGGTCAACGTAGCATTAAGTGGTTCTCTATTTCCTAAACCACTTGAAGGGAATAGAAATAAATTAGGATTTTTTTAGGGGTTTTTGATTATTCCTCATAGAGTTGGTGTTGTGATGCAATAATTCTTCCTTTAGATTAGTAGATCGCCTTCAAAATAACTTTCTATGTTGGCAGCCCCTTGGAAATGAACAGTAATTGCCTTGACAATATTTCATTAATATCACAACTTGAGAAATACAAGGAAGCACACTATGCTTTAGATAGAGTAAACTAAGGGAATAACAGAATAACCAAAATATATAACTTCTCATCAGAAAACAAGTAGACTAACAGGAAATTCTTAAATTATGCATATTTTTTAAGAATTCCATTCGATCACAGTGCCCCTTATGTCATAATGATGGACTAAAAAGACTGATTTATCAGATATTGAATCTTTGCAACTGCTACATAGATTTCAGATTTGTTGAGTTTCTGTTTCCTAAGTGTTCTGCCAATAATTCTTGGATCAATATTGTTTTGCTATAAATTTGCTTGATATTAGGTTGTATTTGTTACATAACCATAGCTGATCCGTGATGATATTCGGTCTGGGAAAACGGACAAGGAAATCTATAAAAAGCTTGAGAATGATTATGGGGAGACGATTCTTTATACCCCAAAGTTTGACCTTCAAACTGCAGCATTATGGCTATCACCGGTCAGTTAATTAGCCTATGAAATTCAAGATTAAGTAAATAGTTCTGCCTATTTCTTCTAATTTGAATTCTAAATATGTTTAACACTTTGGAATAGGTGTTAGTGGCTGGTGCTGCTGCAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAGTCTAATGTTCACATCATGGCTTCAAATCTAGTCAGGGGTGTTCCATTGACCCCTAAAGAGAAACAAACCATGTTAAATCTCCTCTCACCTCCACCTCCTCAGAGAAGCACTTCTTCATGGTGGAGGAGTTGGCGTAGGCAATGA

mRNA sequence

ATGGAAACTGATGAGGATGCTGTAAAAAAAACCCAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCATAATGTTAGGTGTATTGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCAGATATTGCGATTCTCCTCAGAAAGCTGATCCGTGATGATATTCGGTCTGGGAAAACGGACAAGGAAATCTATAAAAAGCTTGAGAATGATTATGGGGAGACGATTCTTTATACCCCAAAGTTTGACCTTCAAACTGCAGCATTATGGCTATCACCGGTGTTAGTGGCTGGTGCTGCTGCAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAGTCTAATGTTCACATCATGGCTTCAAATCTAGTCAGGGGTGTTCCATTGACCCCTAAAGAGAAACAAACCATGTTAAATCTCCTCTCACCTCCACCTCCTCAGAGAAGCACTTCTTCATGGTGGAGGAGTTGGCGTAGGCAATGA

Coding sequence (CDS)

ATGGAAACTGATGAGGATGCTGTAAAAAAAACCCAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCATAATGTTAGGTGTATTGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCAGATATTGCGATTCTCCTCAGAAAGCTGATCCGTGATGATATTCGGTCTGGGAAAACGGACAAGGAAATCTATAAAAAGCTTGAGAATGATTATGGGGAGACGATTCTTTATACCCCAAAGTTTGACCTTCAAACTGCAGCATTATGGCTATCACCGGTGTTAGTGGCTGGTGCTGCTGCAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAGTCTAATGTTCACATCATGGCTTCAAATCTAGTCAGGGGTGTTCCATTGACCCCTAAAGAGAAACAAACCATGTTAAATCTCCTCTCACCTCCACCTCCTCAGAGAAGCACTTCTTCATGGTGGAGGAGTTGGCGTAGGCAATGA

Protein sequence

METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTDKEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMASNLVRGVPLTPKEKQTMLNLLSPPPPQRSTSSWWRSWRRQ

Homology

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BLAST of Lsi05G006810 vs. ExPASy Swiss-Prot
Match: B8AFK5 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. indica OX=39946 GN=CCMH PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.3e-63
Identity = 118/152 (77.63%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTD 60
           M T+ED VK+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRD+I+SGK+D
Sbjct: 1   MATEED-VKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMASN 120
           KEIYKKL+ DYGETILYTPKFDLQTAA+WLSPV+V G AAGVWAY KH+Q++NVHIMA N
Sbjct: 61  KEIYKKLQADYGETILYTPKFDLQTAAIWLSPVIVGGVAAGVWAYKKHRQRTNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLNLLSPPPPQRSTSSWW 153
           LVRGVPLTP+EK+TML++L+PPPP    + WW
Sbjct: 121 LVRGVPLTPREKETMLDVLTPPPP---ANKWW 148

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BLAST of Lsi05G006810 vs. ExPASy Swiss-Prot
Match: Q6K7S7 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. japonica OX=39947 GN=CCMH PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.3e-63
Identity = 118/152 (77.63%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTD 60
           M T+ED VK+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRD+I+SGK+D
Sbjct: 1   MATEED-VKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMASN 120
           KEIYKKL+ DYGETILYTPKFDLQTAA+WLSPV+V G AAGVWAY KH+Q++NVHIMA N
Sbjct: 61  KEIYKKLQADYGETILYTPKFDLQTAAIWLSPVIVGGVAAGVWAYQKHRQRTNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLNLLSPPPPQRSTSSWW 153
           LVRGVPLTP+EK+TML++L+PPPP    + WW
Sbjct: 121 LVRGVPLTPREKETMLDVLTPPPP---ANKWW 148

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BLAST of Lsi05G006810 vs. ExPASy Swiss-Prot
Match: Q9XI46 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMH PE=1 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 6.7e-52
Identity = 102/156 (65.38%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTD 60
           ME  ++  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR++I +GKTD
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMASN 120
           KEIY KLE+++GET+LY PKFDLQTAALWL+PV++AG  A    Y KH+ + NV IMA N
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 LVRGVPLTPKEKQTMLNLLSPP-PPQRSTSSWWRSW 156
           L+RGVPLTPKE+ T+L++L PP PP +   S  R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

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BLAST of Lsi05G006810 vs. ExPASy Swiss-Prot
Match: P45405 (Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=ccmH PE=3 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 7.7e-16
Identity = 47/136 (34.56%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 6   DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTDKEIYK 65
           D +      E RAR++S  +RC+ C +QSI+DS A +A  LR L+R+ I +G ++ ++  
Sbjct: 25  DEIMSDPAKETRARDLSRELRCMVCQNQSIDDSDAPLARDLRLLVRERIAAGDSNSQVLD 84

Query: 66  KLENDYGETILYTPKFDLQTAALW-LSPVLVAGAAAGVWAYSKHKQKSNVHIMASNLVRG 125
            L   YGE +L  P+F+ QT  LW L P+L+ G    +W   + + +S   + A      
Sbjct: 85  FLVARYGEFVLLKPRFERQTLLLWLLGPLLLTGGGLALWLQIRRRSRSGADLPAP----- 144

Query: 126 VPLTPKEKQTMLNLLS 141
            PLTP E+  +  L+S
Sbjct: 145 -PLTPDEEARLAALMS 154

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BLAST of Lsi05G006810 vs. ExPASy Swiss-Prot
Match: P45406 (Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) OX=266834 GN=ccmH PE=3 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 7.2e-14
Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = 0


Query: 6   DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTDKEIYK 65
           D V     +EARAR IS  +RC+ C +QSI+DS A++A  LR L+R+ +++G +D+ +  
Sbjct: 24  DEVLADPALEARARAISAQLRCMVCQNQSIDDSNAELAKDLRLLVRERLKNGDSDEAVIS 83

Query: 66  KLENDYGETILYTPKFDLQTAALWLSP--VLVAGAAAGVWAYSKHKQKSNVHIMASNLVR 125
            + + YGE +L  P+ + +T  LW  P  +LVAG    V A  +   +          V 
Sbjct: 84  YVVSRYGEFVLLNPRLEAKTLVLWGMPAILLVAGIITLVVAARRRGAR----------VP 143

Query: 126 GVPLTPKEKQTMLNLLSP 142
           G PL+ +EK+ +  LL P
Sbjct: 144 GAPLSDEEKERLDRLLRP 151

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BLAST of Lsi05G006810 vs. ExPASy TrEMBL
Match: A0A1S4DZT6 (Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.2e-77
Identity = 147/158 (93.04%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTD 60
           ME DEDA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRD+IRSGKTD
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMASN 120
           KEIYKKLENDYGETILYTPKFDLQTA LWLSPVLVAGAA GVWAYSKHKQ+SNVHIMA N
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLNLLSPPPPQRSTSSWWRSWRRQ 159
           LVRGVPLTPKEKQTML+LLSPPP QR+ SSWWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

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BLAST of Lsi05G006810 vs. ExPASy TrEMBL
Match: A0A5A7TY95 (Cytochrome c-type biogenesis protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00810 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.2e-77
Identity = 147/158 (93.04%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTD 60
           ME DEDA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRD+IRSGKTD
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMASN 120
           KEIYKKLENDYGETILYTPKFDLQTA LWLSPVLVAGAA GVWAYSKHKQ+SNVHIMA N
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLNLLSPPPPQRSTSSWWRSWRRQ 159
           LVRGVPLTPKEKQTML+LLSPPP QR+ SSWWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Lsi05G006810 vs. ExPASy TrEMBL
Match: A0A6J1DHL6 (Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020546 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.4e-76
Identity = 143/158 (90.51%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTD 60
           ME+++DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRD+IRSGK+D
Sbjct: 1   MESNDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMASN 120
           KEIY+KLE+DYGET+LYTPKFDLQTAALWLSPVLVAGAAAGVWAY+KHKQK+NVHIMA N
Sbjct: 61  KEIYRKLEDDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYNKHKQKTNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLNLLSPPPPQRSTSSWWRSWRRQ 159
           LVRGVPLTPKEKQTML+LL+PPPPQR+ SSWWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLTPPPPQRTASSWWRSWRRQ 158

[Close]

BLAST of Lsi05G006810 vs. ExPASy TrEMBL
Match: A0A0A0L351 (Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.1e-76
Identity = 144/158 (91.14%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTD 60
           METDEDA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRD+IRSGK+D
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMASN 120
           K+IYKKLENDYGETILYTPKFDLQTA LWLSPV+VAGAA GVWAYSKHKQ+SNVHIMA N
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLNLLSPPPPQRSTSSWWRSWRRQ 159
           LVRGVPLTPKEKQTML+LLSPPP QR+ SSWWR+WRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158

[Close]

BLAST of Lsi05G006810 vs. ExPASy TrEMBL
Match: A0A6J1JTI4 (Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.8e-75
Identity = 143/158 (90.51%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTD 60
           ME+D DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRD+IRSGK+D
Sbjct: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMASN 120
           KEI+KKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSK+KQKSNVHIMA N
Sbjct: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLNLLSPPPPQRSTSSWWRSWRRQ 159
           +VRGVPLTP+EKQTML+LLSPPPPQR+ S WWR WR Q
Sbjct: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158

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BLAST of Lsi05G006810 vs. NCBI nr
Match: XP_008452301.1 (PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_008452302.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_016901245.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >KAA0046887.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa] >TYK03260.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 147/158 (93.04%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTD 60
           ME DEDA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRD+IRSGKTD
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMASN 120
           KEIYKKLENDYGETILYTPKFDLQTA LWLSPVLVAGAA GVWAYSKHKQ+SNVHIMA N
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLNLLSPPPPQRSTSSWWRSWRRQ 159
           LVRGVPLTPKEKQTML+LLSPPP QR+ SSWWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Lsi05G006810 vs. NCBI nr
Match: XP_022152937.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charantia])

HSP 1 Score: 294.7 bits (753), Expect = 4.9e-76
Identity = 143/158 (90.51%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTD 60
           ME+++DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRD+IRSGK+D
Sbjct: 1   MESNDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMASN 120
           KEIY+KLE+DYGET+LYTPKFDLQTAALWLSPVLVAGAAAGVWAY+KHKQK+NVHIMA N
Sbjct: 61  KEIYRKLEDDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYNKHKQKTNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLNLLSPPPPQRSTSSWWRSWRRQ 159
           LVRGVPLTPKEKQTML+LL+PPPPQR+ SSWWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLTPPPPQRTASSWWRSWRRQ 158

[Close]

BLAST of Lsi05G006810 vs. NCBI nr
Match: XP_004149299.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >KGN56203.1 hypothetical protein Csa_010849 [Cucumis sativus])

HSP 1 Score: 294.3 bits (752), Expect = 6.4e-76
Identity = 144/158 (91.14%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTD 60
           METDEDA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRD+IRSGK+D
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMASN 120
           K+IYKKLENDYGETILYTPKFDLQTA LWLSPV+VAGAA GVWAYSKHKQ+SNVHIMA N
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLNLLSPPPPQRSTSSWWRSWRRQ 159
           LVRGVPLTPKEKQTML+LLSPPP QR+ SSWWR+WRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158

[Close]

BLAST of Lsi05G006810 vs. NCBI nr
Match: XP_038904619.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904620.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904621.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida])

HSP 1 Score: 292.7 bits (748), Expect = 1.9e-75
Identity = 145/153 (94.77%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTD 60
           METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRD+IRSGKTD
Sbjct: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMASN 120
           KEIYKKLENDYGET+LYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQ+SNVHIMA N
Sbjct: 61  KEIYKKLENDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLNLLSPPPPQRSTSSWWR 154
           LVRGVPLTPKEKQTML+LLSPPP QR++SSWWR
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTSSSWWR 153

[Close]

BLAST of Lsi05G006810 vs. NCBI nr
Match: XP_022953979.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953980.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953981.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953983.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953984.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022992421.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992422.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992423.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992424.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992425.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_023549463.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549464.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549465.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549466.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >KAG7014070.1 Cytochrome c-type biogenesis CcmH-like mitochondrial protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 143/158 (90.51%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTD 60
           ME+D DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRD+IRSGK+D
Sbjct: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMASN 120
           KEI+KKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSK+KQKSNVHIMA N
Sbjct: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLNLLSPPPPQRSTSSWWRSWRRQ 159
           +VRGVPLTP+EKQTML+LLSPPPPQR+ S WWR WR Q
Sbjct: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158

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BLAST of Lsi05G006810 vs. TAIR 10
Match: AT1G15220.1 (cytochrome c biogenesis protein family )

HSP 1 Score: 204.9 bits (520), Expect = 4.7e-53
Identity = 102/156 (65.38%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTD 60
           ME  ++  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR++I +GKTD
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMASN 120
           KEIY KLE+++GET+LY PKFDLQTAALWL+PV++AG  A    Y KH+ + NV IMA N
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 LVRGVPLTPKEKQTMLNLLSPP-PPQRSTSSWWRSW 156
           L+RGVPLTPKE+ T+L++L PP PP +   S  R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

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BLAST of Lsi05G006810 vs. TAIR 10
Match: AT1G15220.2 (cytochrome c biogenesis protein family )

HSP 1 Score: 204.9 bits (520), Expect = 4.7e-53
Identity = 102/156 (65.38%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDDIRSGKTD 60
           ME  ++  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR++I +GKTD
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMASN 120
           KEIY KLE+++GET+LY PKFDLQTAALWL+PV++AG  A    Y KH+ + NV IMA N
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 LVRGVPLTPKEKQTMLNLLSPP-PPQRSTSSWWRSW 156
           L+RGVPLTPKE+ T+L++L PP PP +   S  R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

The following BLAST results are available for this feature:

BLAST of Lsi05G006810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8AFK5	1.3e-63	77.63	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q6K7S7	1.3e-63	77.63	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q9XI46	6.7e-52	65.38	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thal...	[more]
P45405	7.7e-16	34.56	Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (stra...	[more]
P45406	7.2e-14	35.51	Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) OX...	[more]

BLAST of Lsi05G006810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DZT6	6.2e-77	93.04	Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=...	[more]
A0A5A7TY95	6.2e-77	93.04	Cytochrome c-type biogenesis protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1DHL6	2.4e-76	90.51	Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A0A0L351	3.1e-76	91.14	Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 ...	[more]
A0A6J1JTI4	5.8e-75	90.51	Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733...	[more]

BLAST of Lsi05G006810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452301.1	1.3e-76	93.04	PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis...	[more]
XP_022152937.1	4.9e-76	90.51	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charanti...	[more]
XP_004149299.1	6.4e-76	91.14	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >...	[more]
XP_038904619.1	1.9e-75	94.77	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida]...	[more]
XP_022953979.1	1.2e-74	90.51	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata...	[more]

BLAST of Lsi05G006810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15220.1	4.7e-53	65.38	cytochrome c biogenesis protein family	[more]
AT1G15220.2	4.7e-53	65.38	cytochrome c biogenesis protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005616	CcmH/CycL/Ccl2/NrfF family	PFAM	PF03918	CcmH	coord: 6..136 e-value: 5.4E-30 score: 103.5
IPR038297	CcmH/CycL/Ccl2/NrfF domain superfamily	GENE3D	1.10.8.640	Cytochrome C biogenesis protein	coord: 2..82 e-value: 1.2E-20 score: 75.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..158
None	No IPR available	PANTHER	PTHR47601	FAMILY NOT NAMED	coord: 1..156
None	No IPR available	CDD	cd16378	CcmH_N	coord: 14..79 e-value: 5.77427E-26 score: 91.8214

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G006810.1	Lsi05G006810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0032991	protein-containing complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity