Lsi05G006760 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G006760
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Calcium-binding EF-hand
Location	chr05: 8949268 .. 8949609 (+)
RNA-Seq Expression	Lsi05G006760
Synteny	Lsi05G006760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTTACCGGAGAGCAATCAGGATTCCAGGACTGGCTGCCGACGATGGCGCAGAAGCTCGGCGGCGAGGGGCTGATCGGGGAGCTTTGCAATGGCTTCAATCTTCTGATGGATAGAGAGAAGGGGGTGATCGATTTCGAGAGCCTGAAGAGGAACGCGGCGGCGCTAGGGCTGGCGGATCTGAGATCAATGTTGAGGGAGGGGGATTTCGACGGAGATGGTGCTCTTAATCAGATGGAGTTTTGTGTTCTTATGTTCAGATTGAGCCCTGATTTGATGGATGAGTCATGGTTCTTGCTCGAGGAGGCTCTACACCAAGAATTCAAGGATTTTTGTTGA

mRNA sequence

ATGGCATTTACCGGAGAGCAATCAGGATTCCAGGACTGGCTGCCGACGATGGCGCAGAAGCTCGGCGGCGAGGGGCTGATCGGGGAGCTTTGCAATGGCTTCAATCTTCTGATGGATAGAGAGAAGGGGGTGATCGATTTCGAGAGCCTGAAGAGGAACGCGGCGGCGCTAGGGCTGGCGGATCTGAGATCAATGTTGAGGGAGGGGGATTTCGACGGAGATGGTGCTCTTAATCAGATGGAGTTTTGTGTTCTTATGTTCAGATTGAGCCCTGATTTGATGGATGAGTCATGGTTCTTGCTCGAGGAGGCTCTACACCAAGAATTCAAGGATTTTTGTTGA

Coding sequence (CDS)

ATGGCATTTACCGGAGAGCAATCAGGATTCCAGGACTGGCTGCCGACGATGGCGCAGAAGCTCGGCGGCGAGGGGCTGATCGGGGAGCTTTGCAATGGCTTCAATCTTCTGATGGATAGAGAGAAGGGGGTGATCGATTTCGAGAGCCTGAAGAGGAACGCGGCGGCGCTAGGGCTGGCGGATCTGAGATCAATGTTGAGGGAGGGGGATTTCGACGGAGATGGTGCTCTTAATCAGATGGAGTTTTGTGTTCTTATGTTCAGATTGAGCCCTGATTTGATGGATGAGTCATGGTTCTTGCTCGAGGAGGCTCTACACCAAGAATTCAAGGATTTTTGTTGA

Protein sequence

MAFTGEQSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLADLRSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQEFKDFC

Homology

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BLAST of Lsi05G006760 vs. ExPASy Swiss-Prot
Match: O81831 (Calcium-binding protein KRP1 OS=Arabidopsis thaliana OX=3702 GN=KRP1 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.8e-36
Identity = 79/109 (72.48%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 7   QSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAA-LGLADL--- 66
           Q  F D+LPTMA  LGGEGLIGELCNGF LLMDREKGVI FESL+RNAAA LGL DL   
Sbjct: 16  QPNFHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVLGLGDLTDE 75

Query: 67  --RSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQEF 110
             R M++EGDFD DGALNQMEFCVLMFRLSPDLM+ S  L+ E + +EF
Sbjct: 76  DVRCMIKEGDFDCDGALNQMEFCVLMFRLSPDLMEASRCLVTEVIEEEF 124

[Close]

BLAST of Lsi05G006760 vs. ExPASy Swiss-Prot
Match: Q9LSQ6 (Calcium-binding protein PBP1 OS=Arabidopsis thaliana OX=3702 GN=PBP1 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.2e-32
Identity = 70/110 (63.64%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 6   EQSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAA-ALGLADL-- 65
           ++  FQD+ PTMA KLGGEGLI E+C GF LLMD++KGVI FESL+RNA+  LGL DL  
Sbjct: 15  QEPQFQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTD 74

Query: 66  ---RSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQEF 110
              R M+ EGDFD DGALNQMEFCVLMFRLSP+LM+ S  ++ E + +EF
Sbjct: 75  DDVRYMINEGDFDRDGALNQMEFCVLMFRLSPELMEASRCVVTEVIEEEF 124

[Close]

BLAST of Lsi05G006760 vs. ExPASy Swiss-Prot
Match: Q9ZPX9 (Calcium-binding protein KIC OS=Arabidopsis thaliana OX=3702 GN=KIC PE=1 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 3.2e-24
Identity = 56/110 (50.91%), Postives = 77/110 (70.00%), Query Frame = 0


Query: 4   TGEQSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGL---- 63
           T  ++ ++D LP MA+K+  E  + ELC GF+LL D E+ +I  ESL+RN+  LG+    
Sbjct: 16  TKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMS 75

Query: 64  -ADLRSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQE 109
             D + M+REGD DGDGALNQ EFCVLM RLSP++M+++   LE+AL QE
Sbjct: 76  KEDAQGMVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQE 125

[Close]

BLAST of Lsi05G006760 vs. ExPASy Swiss-Prot
Match: Q2TBN3 (Centrin-2 OS=Bos taurus OX=9913 GN=CETN2 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-08
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 4   TGEQSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALG--LAD 63
           TG+ + F D+L  M QK+  +    E+   F L  D E G I F++LKR A  LG  L+D
Sbjct: 81  TGKMN-FSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLSD 140

Query: 64  --LRSMLREGDFDGDGALNQMEFCVLMFRLS 91
             L+ M+ E D DGDG +N+ EF  +M + S
Sbjct: 141 EELQEMIDEADRDGDGEVNEQEFLRIMKKTS 170

[Close]

BLAST of Lsi05G006760 vs. ExPASy Swiss-Prot
Match: Q9R1K9 (Centrin-2 OS=Mus musculus OX=10090 GN=Cetn2 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-08
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 4   TGEQSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALG--LAD 63
           TG+ + F D+L  M QK+  +    E+   F L  D E G I F++LKR A  LG  L D
Sbjct: 81  TGKMN-FSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTD 140

Query: 64  --LRSMLREGDFDGDGALNQMEFCVLMFRLS 91
             L+ M+ E D DGDG +N+ EF  +M + S
Sbjct: 141 EELQEMIDEADRDGDGEVNEQEFLRIMKKTS 170

[Close]

BLAST of Lsi05G006760 vs. ExPASy TrEMBL
Match: A0A1S3BSY1 (calcium-binding protein PBP1 OS=Cucumis melo OX=3656 GN=LOC103493375 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.0e-54
Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MAFTGEQSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA 60
           MAF+ E+SGF+DWLPTMA++LGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA
Sbjct: 1   MAFSAEKSGFEDWLPTMAERLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA 60

Query: 61  -----DLRSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQEFKDFC 114
                DLRSMLREGDFDGDGALNQMEFCVLMFRLSP+LMDESWFLLEEALHQEFKDFC
Sbjct: 61  DLSDEDLRSMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEEALHQEFKDFC 118

[Close]

BLAST of Lsi05G006760 vs. ExPASy TrEMBL
Match: A0A0A0L347 (EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G099590 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.3e-52
Identity = 103/118 (87.29%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MAFTGEQSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA 60
           MAF+ E+SGF+DWLPTMA++LGGEGLIGELCNGFNLLM+REKGVIDFESLKRNAAALGL 
Sbjct: 1   MAFSAEKSGFEDWLPTMAERLGGEGLIGELCNGFNLLMNREKGVIDFESLKRNAAALGLG 60

Query: 61  -----DLRSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQEFKDFC 114
                DLRSMLREGDFDGDGALNQMEFCVLMFRLSP+LM+ESWFLLEEALHQEFKDFC
Sbjct: 61  DLSDEDLRSMLREGDFDGDGALNQMEFCVLMFRLSPELMEESWFLLEEALHQEFKDFC 118

[Close]

BLAST of Lsi05G006760 vs. ExPASy TrEMBL
Match: A0A6J1EN05 (calcium-binding protein PBP1-like OS=Cucurbita moschata OX=3662 GN=LOC111435976 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.7e-50
Identity = 100/118 (84.75%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MAFTGEQSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA 60
           MAF  +QSGF+DWLP MA++LGGEGLIGELCNGFNLL DREKGVIDFESLKRNAAALGLA
Sbjct: 1   MAFVADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLA 60

Query: 61  -----DLRSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQEFKDFC 114
                DLR MLREGDFDGDGALNQMEFCVLMFRLSP+LMDESWFLLE+AL+QEFK FC
Sbjct: 61  DLSDEDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEFKGFC 118

[Close]

BLAST of Lsi05G006760 vs. ExPASy TrEMBL
Match: A0A6J1JAW3 (calcium-binding protein PBP1 OS=Cucurbita maxima OX=3661 GN=LOC111483314 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.5e-48
Identity = 98/117 (83.76%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MAFTGEQSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA 60
           MAF  +QSGF+DWLP MA++LGGEGLIGELCNGFNLL DREKGVIDF SLKRNAAALGLA
Sbjct: 1   MAFVADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFSSLKRNAAALGLA 60

Query: 61  -----DLRSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQEFKDF 113
                DLR MLREGDFDGDGALNQMEFCVLMFRLSP+LMDESWFLLE+AL QEFK F
Sbjct: 61  DLSDEDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALSQEFKGF 117

[Close]

BLAST of Lsi05G006760 vs. ExPASy TrEMBL
Match: A0A6J1CM41 (calcium-binding protein PBP1 OS=Momordica charantia OX=3673 GN=LOC111012869 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.8e-44
Identity = 91/112 (81.25%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 7   QSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA-----D 66
           +SGF DWLPTMA +LGGEGLIGELC+GF+LLMDREKGVIDFESLKRNAAALGL      D
Sbjct: 11  ESGFHDWLPTMAARLGGEGLIGELCSGFSLLMDREKGVIDFESLKRNAAALGLGDLTDED 70

Query: 67  LRSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQEFKDFC 114
           LR MLREGDFDGDGALNQMEFCVLMFRLSP+LMDES F L++AL  EF+DFC
Sbjct: 71  LRGMLREGDFDGDGALNQMEFCVLMFRLSPELMDESLFCLDQALTHEFRDFC 122

[Close]

BLAST of Lsi05G006760 vs. NCBI nr
Match: XP_038903612.1 (calcium-binding protein KRP1-like [Benincasa hispida])

HSP 1 Score: 221.9 bits (564), Expect = 2.9e-54
Identity = 109/118 (92.37%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MAFTGEQSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA 60
           MAF  EQSGFQDWLPTMAQ+LGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA
Sbjct: 29  MAFGAEQSGFQDWLPTMAQRLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA 88

Query: 61  -----DLRSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQEFKDFC 114
                DLRSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEAL+QEFKDFC
Sbjct: 89  DLSDEDLRSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALNQEFKDFC 146

[Close]

BLAST of Lsi05G006760 vs. NCBI nr
Match: XP_008452312.1 (PREDICTED: calcium-binding protein PBP1 [Cucumis melo])

HSP 1 Score: 220.3 bits (560), Expect = 8.4e-54
Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MAFTGEQSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA 60
           MAF+ E+SGF+DWLPTMA++LGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA
Sbjct: 1   MAFSAEKSGFEDWLPTMAERLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA 60

Query: 61  -----DLRSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQEFKDFC 114
                DLRSMLREGDFDGDGALNQMEFCVLMFRLSP+LMDESWFLLEEALHQEFKDFC
Sbjct: 61  DLSDEDLRSMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEEALHQEFKDFC 118

[Close]

BLAST of Lsi05G006760 vs. NCBI nr
Match: XP_004149304.1 (calcium-binding protein KRP1 [Cucumis sativus] >KGN56198.1 hypothetical protein Csa_010363 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 2.7e-52
Identity = 103/118 (87.29%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MAFTGEQSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA 60
           MAF+ E+SGF+DWLPTMA++LGGEGLIGELCNGFNLLM+REKGVIDFESLKRNAAALGL 
Sbjct: 1   MAFSAEKSGFEDWLPTMAERLGGEGLIGELCNGFNLLMNREKGVIDFESLKRNAAALGLG 60

Query: 61  -----DLRSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQEFKDFC 114
                DLRSMLREGDFDGDGALNQMEFCVLMFRLSP+LM+ESWFLLEEALHQEFKDFC
Sbjct: 61  DLSDEDLRSMLREGDFDGDGALNQMEFCVLMFRLSPELMEESWFLLEEALHQEFKDFC 118

[Close]

BLAST of Lsi05G006760 vs. NCBI nr
Match: XP_022929391.1 (calcium-binding protein PBP1-like [Cucurbita moschata] >XP_023552392.1 calcium-binding protein PBP1 [Cucurbita pepo subsp. pepo] >KAG6577399.1 Calcium-binding protein KRP1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015477.1 Calcium-binding protein PBP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207.6 bits (527), Expect = 5.6e-50
Identity = 100/118 (84.75%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MAFTGEQSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA 60
           MAF  +QSGF+DWLP MA++LGGEGLIGELCNGFNLL DREKGVIDFESLKRNAAALGLA
Sbjct: 1   MAFVADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFESLKRNAAALGLA 60

Query: 61  -----DLRSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQEFKDFC 114
                DLR MLREGDFDGDGALNQMEFCVLMFRLSP+LMDESWFLLE+AL+QEFK FC
Sbjct: 61  DLSDEDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALNQEFKGFC 118

[Close]

BLAST of Lsi05G006760 vs. NCBI nr
Match: XP_022985275.1 (calcium-binding protein PBP1 [Cucurbita maxima])

HSP 1 Score: 201.1 bits (510), Expect = 5.2e-48
Identity = 98/117 (83.76%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MAFTGEQSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGLA 60
           MAF  +QSGF+DWLP MA++LGGEGLIGELCNGFNLL DREKGVIDF SLKRNAAALGLA
Sbjct: 1   MAFVADQSGFEDWLPKMAERLGGEGLIGELCNGFNLLKDREKGVIDFSSLKRNAAALGLA 60

Query: 61  -----DLRSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQEFKDF 113
                DLR MLREGDFDGDGALNQMEFCVLMFRLSP+LMDESWFLLE+AL QEFK F
Sbjct: 61  DLSDEDLREMLREGDFDGDGALNQMEFCVLMFRLSPELMDESWFLLEDALSQEFKGF 117

[Close]

BLAST of Lsi05G006760 vs. TAIR 10
Match: AT4G27280.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 151.8 bits (382), Expect = 3.4e-37
Identity = 79/109 (72.48%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 7   QSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAA-LGLADL--- 66
           Q  F D+LPTMA  LGGEGLIGELCNGF LLMDREKGVI FESL+RNAAA LGL DL   
Sbjct: 16  QPNFHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVLGLGDLTDE 75

Query: 67  --RSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQEF 110
             R M++EGDFD DGALNQMEFCVLMFRLSPDLM+ S  L+ E + +EF
Sbjct: 76  DVRCMIKEGDFDCDGALNQMEFCVLMFRLSPDLMEASRCLVTEVIEEEF 124

[Close]

BLAST of Lsi05G006760 vs. TAIR 10
Match: AT5G54490.1 (pinoid-binding protein 1 )

HSP 1 Score: 138.7 bits (348), Expect = 3.0e-33
Identity = 70/110 (63.64%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 6   EQSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAA-ALGLADL-- 65
           ++  FQD+ PTMA KLGGEGLI E+C GF LLMD++KGVI FESL+RNA+  LGL DL  
Sbjct: 15  QEPQFQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTD 74

Query: 66  ---RSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQEF 110
              R M+ EGDFD DGALNQMEFCVLMFRLSP+LM+ S  ++ E + +EF
Sbjct: 75  DDVRYMINEGDFDRDGALNQMEFCVLMFRLSPELMEASRCVVTEVIEEEF 124

[Close]

BLAST of Lsi05G006760 vs. TAIR 10
Match: AT2G46600.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 112.5 bits (280), Expect = 2.3e-25
Identity = 56/110 (50.91%), Postives = 77/110 (70.00%), Query Frame = 0


Query: 4   TGEQSGFQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGL---- 63
           T  ++ ++D LP MA+K+  E  + ELC GF+LL D E+ +I  ESL+RN+  LG+    
Sbjct: 16  TKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMS 75

Query: 64  -ADLRSMLREGDFDGDGALNQMEFCVLMFRLSPDLMDESWFLLEEALHQE 109
             D + M+REGD DGDGALNQ EFCVLM RLSP++M+++   LE+AL QE
Sbjct: 76  KEDAQGMVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQE 125

[Close]

BLAST of Lsi05G006760 vs. TAIR 10
Match: AT3G50360.1 (centrin2 )

HSP 1 Score: 43.9 bits (102), Expect = 1.0e-04
Identity = 27/83 (32.53%), Postives = 41/83 (49.40%), Query Frame = 0


Query: 10  FQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALGL----ADLRSM 69
           F +++  M  K+G      EL   F ++   + G I  + +KR A  LG     A++R M
Sbjct: 81  FDEFVHMMTAKIGERDTKEELTKAFQIIDLDKNGKISPDDIKRMAKDLGENFTDAEIREM 140

Query: 70  LREGDFDGDGALNQMEFCVLMFR 89
           + E D D DG +N  EF  +M R
Sbjct: 141 VEEADRDRDGEVNMDEFMRMMRR 163

[Close]

BLAST of Lsi05G006760 vs. TAIR 10
Match: AT1G66410.1 (calmodulin 4 )

HSP 1 Score: 41.2 bits (95), Expect = 6.5e-04
Identity = 27/81 (33.33%), Postives = 38/81 (46.91%), Query Frame = 0


Query: 10  FQDWLPTMAQKLGGEGLIGELCNGFNLLMDREKGVIDFESLKRNAAALG--LAD--LRSM 69
           F ++L  MA+K+       EL   F +    + G I    L+     LG  L D  +  M
Sbjct: 66  FPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEM 125

Query: 70  LREGDFDGDGALNQMEFCVLM 87
           +RE D DGDG +N  EF  +M
Sbjct: 126 IREADVDGDGQINYEEFVKIM 146

The following BLAST results are available for this feature:

BLAST of Lsi05G006760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81831	4.8e-36	72.48	Calcium-binding protein KRP1 OS=Arabidopsis thaliana OX=3702 GN=KRP1 PE=2 SV=1	[more]
Q9LSQ6	4.2e-32	63.64	Calcium-binding protein PBP1 OS=Arabidopsis thaliana OX=3702 GN=PBP1 PE=1 SV=1	[more]
Q9ZPX9	3.2e-24	50.91	Calcium-binding protein KIC OS=Arabidopsis thaliana OX=3702 GN=KIC PE=1 SV=2	[more]
Q2TBN3	1.9e-08	40.66	Centrin-2 OS=Bos taurus OX=9913 GN=CETN2 PE=2 SV=1	[more]
Q9R1K9	2.5e-08	40.66	Centrin-2 OS=Mus musculus OX=10090 GN=Cetn2 PE=1 SV=1	[more]

BLAST of Lsi05G006760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BSY1	4.0e-54	89.83	calcium-binding protein PBP1 OS=Cucumis melo OX=3656 GN=LOC103493375 PE=4 SV=1	[more]
A0A0A0L347	1.3e-52	87.29	EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G099590 PE=...	[more]
A0A6J1EN05	2.7e-50	84.75	calcium-binding protein PBP1-like OS=Cucurbita moschata OX=3662 GN=LOC111435976 ...	[more]
A0A6J1JAW3	2.5e-48	83.76	calcium-binding protein PBP1 OS=Cucurbita maxima OX=3661 GN=LOC111483314 PE=4 SV...	[more]
A0A6J1CM41	3.8e-44	81.25	calcium-binding protein PBP1 OS=Momordica charantia OX=3673 GN=LOC111012869 PE=4...	[more]

BLAST of Lsi05G006760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903612.1	2.9e-54	92.37	calcium-binding protein KRP1-like [Benincasa hispida]	[more]
XP_008452312.1	8.4e-54	89.83	PREDICTED: calcium-binding protein PBP1 [Cucumis melo]	[more]
XP_004149304.1	2.7e-52	87.29	calcium-binding protein KRP1 [Cucumis sativus] >KGN56198.1 hypothetical protein ...	[more]
XP_022929391.1	5.6e-50	84.75	calcium-binding protein PBP1-like [Cucurbita moschata] >XP_023552392.1 calcium-b...	[more]
XP_022985275.1	5.2e-48	83.76	calcium-binding protein PBP1 [Cucurbita maxima]	[more]

BLAST of Lsi05G006760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27280.1	3.4e-37	72.48	Calcium-binding EF-hand family protein	[more]
AT5G54490.1	3.0e-33	63.64	pinoid-binding protein 1	[more]
AT2G46600.1	2.3e-25	50.91	Calcium-binding EF-hand family protein	[more]
AT3G50360.1	1.0e-04	32.53	centrin2	[more]
AT1G66410.1	6.5e-04	33.33	calmodulin 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13833	EF-hand_8	coord: 41..88 e-value: 2.2E-15 score: 56.1
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 57..92 score: 9.882769
None	No IPR available	GENE3D	1.10.238.10		coord: 8..112 e-value: 5.9E-16 score: 60.4
None	No IPR available	PANTHER	PTHR47319:SF6	CALCIUM-BINDING PROTEIN KRP1	coord: 4..112
IPR044205	Calcium-binding protein KIC/PBP1/KRP1	PANTHER	PTHR47319	CALCIUM-BINDING PROTEIN KIC	coord: 4..112
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 70..82
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 9..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G006760.1	Lsi05G006760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding