Lsi05G006450 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G006450
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	WD repeat-containing protein 25
Location	chr05: 8153894 .. 8154259 (+)
RNA-Seq Expression	Lsi05G006450
Synteny	Lsi05G006450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCTACACTTGTCCATCTGTGAGATGCCACCCCTTTGATCCAGCTTTTATCGCCCAATCGAATGGAGGTTATATTGCAATATTCTCTCTAAATCCACCTTTCAAGTTAGACAAATACAAGAGGTATGGAAGTCATGGAGTCTCGGGCTTTCCAATAAAATGTAACTTCAGCCTTGATGCCAAGCAGATCATCTCTGGTTCTTCAGATGGCTCTATATATTTTTATGATTATAAATCCTCCTTGCTTATGCATAAACTAAAAGCATTTGAACAGGCTTGCATAGACATTGCCATCCACCCGACCTTACCTAATGTAATTGCTTCGAGCAGTTGGAATGGGAAGATCGCAGTGTTCCAGTGA

mRNA sequence

ATGGAAGCCTACACTTGTCCATCTGTGAGATGCCACCCCTTTGATCCAGCTTTTATCGCCCAATCGAATGGAGGTTATATTGCAATATTCTCTCTAAATCCACCTTTCAAGTTAGACAAATACAAGAGGTATGGAAGTCATGGAGTCTCGGGCTTTCCAATAAAATGTAACTTCAGCCTTGATGCCAAGCAGATCATCTCTGGTTCTTCAGATGGCTCTATATATTTTTATGATTATAAATCCTCCTTGCTTATGCATAAACTAAAAGCATTTGAACAGGCTTGCATAGACATTGCCATCCACCCGACCTTACCTAATGTAATTGCTTCGAGCAGTTGGAATGGGAAGATCGCAGTGTTCCAGTGA

Coding sequence (CDS)

ATGGAAGCCTACACTTGTCCATCTGTGAGATGCCACCCCTTTGATCCAGCTTTTATCGCCCAATCGAATGGAGGTTATATTGCAATATTCTCTCTAAATCCACCTTTCAAGTTAGACAAATACAAGAGGTATGGAAGTCATGGAGTCTCGGGCTTTCCAATAAAATGTAACTTCAGCCTTGATGCCAAGCAGATCATCTCTGGTTCTTCAGATGGCTCTATATATTTTTATGATTATAAATCCTCCTTGCTTATGCATAAACTAAAAGCATTTGAACAGGCTTGCATAGACATTGCCATCCACCCGACCTTACCTAATGTAATTGCTTCGAGCAGTTGGAATGGGAAGATCGCAGTGTTCCAGTGA

Protein sequence

MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKIAVFQ

Homology

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BLAST of Lsi05G006450 vs. ExPASy Swiss-Prot
Match: Q64LD2 (WD repeat-containing protein 25 OS=Homo sapiens OX=9606 GN=WDR25 PE=1 SV=3)

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-23
Identity = 43/119 (36.13%), Postives = 74/119 (62.18%), Query Frame = 0


Query: 2   EAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLD 61
           E +TCPS+  HP +P F+AQ+NG Y+A+FS   P+++ + +RY  H V G+ + C  S  
Sbjct: 425 ERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCECSPG 484

Query: 62  AKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKIAVF 121
              +++GS+DG +  Y ++++     L+   QAC+    HP LP+V+A+ SW G + ++
Sbjct: 485 GDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDMKIW 543

[Close]

BLAST of Lsi05G006450 vs. ExPASy Swiss-Prot
Match: E9Q349 (WD repeat-containing protein 25 OS=Mus musculus OX=10090 GN=Wdr25 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.8e-23
Identity = 43/119 (36.13%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 2   EAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLD 61
           E YTCPS+  HP +P F+AQ+NG Y+A+FS   P+++ + +RY  H V G+ + C  S  
Sbjct: 416 ERYTCPSLALHPREPVFLAQTNGNYLALFSSVWPYRMSRRRRYEGHKVEGYAVGCECSPC 475

Query: 62  AKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKIAVF 121
              +++GS+DG +  + ++++     L+   QAC+    HP LP+V+ + SW G I ++
Sbjct: 476 GDLLVTGSADGRVLMFSFRTASRACTLQGHTQACLGTTYHPVLPSVLGTCSWGGDIKIW 534

[Close]

BLAST of Lsi05G006450 vs. ExPASy Swiss-Prot
Match: O60508 (Pre-mRNA-processing factor 17 OS=Homo sapiens OX=9606 GN=CDC40 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.8e-12
Identity = 34/117 (29.06%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 4   YTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAK 63
           ++ P+V   P       QS    I IF     F+L+K K +  H V+G+  + +FS D  
Sbjct: 462 HSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMS 521

Query: 64  QIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKIAVF 121
            +ISG  +G +  +D+K++ L  + KA ++ CI    HP   + + +  W+G I ++
Sbjct: 522 YVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLW 578

[Close]

BLAST of Lsi05G006450 vs. ExPASy Swiss-Prot
Match: Q9DC48 (Pre-mRNA-processing factor 17 OS=Mus musculus OX=10090 GN=Cdc40 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.8e-12
Identity = 34/117 (29.06%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 4   YTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAK 63
           ++ P+V   P       QS    I IF     F+L+K K +  H V+G+  + +FS D  
Sbjct: 462 HSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMS 521

Query: 64  QIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKIAVF 121
            +ISG  +G +  +D+K++ L  + KA ++ CI    HP   + + +  W+G I ++
Sbjct: 522 YVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLW 578

[Close]

BLAST of Lsi05G006450 vs. ExPASy Swiss-Prot
Match: Q9CAA0 (Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 5.2e-04
Identity = 34/109 (31.19%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 8   SVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQ-II 67
           SV  HP +P  +A    G + I++      +       S  V+  P++    +  KQ ++
Sbjct: 20  SVDLHPTEPWILASLYSGTLCIWNYQTQTMVK------SFDVTELPVRSAKFIARKQWVV 79

Query: 68  SGSSDGSIYFYDYKSSLLMHKLKAFEQACID----IAIHPTLPNVIASS 112
           +G+ D  I  Y+Y +   M K+K FE A  D    +A+HPTLP V++SS
Sbjct: 80  AGADDMFIRVYNYNT---MDKIKVFE-AHADYIRCVAVHPTLPYVLSSS 118

[Close]

BLAST of Lsi05G006450 vs. ExPASy TrEMBL
Match: A0A1S4DZ03 (WD repeat-containing protein 25 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493399 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.3e-61
Identity = 115/121 (95.04%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSL 60
           MEAYTCPSVRCHPFDPAFIAQSNG YIAIFSLNPPFKLDKYKRY SHGVSGFPIKCNFSL
Sbjct: 318 MEAYTCPSVRCHPFDPAFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL 377

Query: 61  DAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKIAVF 120
           DAKQIISGSSDGSIYFYDYKSSLL+HKLKA EQACIDIAIHPTLPNVIAS SWNGKI+VF
Sbjct: 378 DAKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACIDIAIHPTLPNVIASCSWNGKISVF 437

Query: 121 Q 122
           Q
Sbjct: 438 Q 438

[Close]

BLAST of Lsi05G006450 vs. ExPASy TrEMBL
Match: A0A0A0L568 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G088960 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.6e-61
Identity = 115/121 (95.04%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSL 60
           MEAYTCPSVRCHP DPAFIAQSNGGYIAIFSLNPPFKLDKYKRY SHGVSGFPIKCNFSL
Sbjct: 157 MEAYTCPSVRCHPSDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL 216

Query: 61  DAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKIAVF 120
           DAKQIISGSSDGSIYFYDYKSSLL+HKLKA EQACIDIAIHPTLPNVIAS SWNGKI+VF
Sbjct: 217 DAKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACIDIAIHPTLPNVIASCSWNGKISVF 276

Query: 121 Q 122
           Q
Sbjct: 277 Q 277

[Close]

BLAST of Lsi05G006450 vs. ExPASy TrEMBL
Match: A0A6J1FN47 (WD repeat-containing protein 25 OS=Cucurbita moschata OX=3662 GN=LOC111446958 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58
Identity = 109/121 (90.08%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSL 60
           MEAYTCP VRCHPFDP FIAQSNG YIAIFSLNPPFKLDKYKRYGSH VSGFPIKCNFSL
Sbjct: 316 MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYGSHVVSGFPIKCNFSL 375

Query: 61  DAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKIAVF 120
           D KQIISGSSDGSIYFYDYKSSLL+HKLKA EQAC D+AIHPTLPNVIAS SWNG I+VF
Sbjct: 376 DGKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACTDVAIHPTLPNVIASCSWNGNISVF 435

Query: 121 Q 122
           Q
Sbjct: 436 Q 436

[Close]

BLAST of Lsi05G006450 vs. ExPASy TrEMBL
Match: A0A6J1JQD9 (WD repeat-containing protein 25 OS=Cucurbita maxima OX=3661 GN=LOC111488910 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.9e-58
Identity = 108/121 (89.26%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSL 60
           MEAYTCP VRCHPFDP FIAQSNG YIAIFSLNPPFKLDKYKRYGSH VSGFPIKC+FSL
Sbjct: 316 MEAYTCPCVRCHPFDPVFIAQSNGDYIAIFSLNPPFKLDKYKRYGSHVVSGFPIKCDFSL 375

Query: 61  DAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKIAVF 120
           D KQIISGSSDGSIYFYDYKSSLL+HKLKA EQAC D+AIHPTLPNVIAS SWNG I VF
Sbjct: 376 DGKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACTDVAIHPTLPNVIASCSWNGNICVF 435

Query: 121 Q 122
           Q
Sbjct: 436 Q 436

[Close]

BLAST of Lsi05G006450 vs. ExPASy TrEMBL
Match: A0A6J1CMQ5 (WD repeat-containing protein 25 OS=Momordica charantia OX=3673 GN=LOC111012887 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.4e-57
Identity = 106/121 (87.60%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSL 60
           MEAYTCP VRCHPFDP FIAQSNG Y+AIFSLNPPFKLDKYKRY SHGVSGFPIKCNFSL
Sbjct: 316 MEAYTCPCVRCHPFDPVFIAQSNGDYVAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL 375

Query: 61  DAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKIAVF 120
           D KQIISGSSDGS+YFYDYKSSLL+ K KAFE ACID+AIHP LPNVIAS SWNG IAVF
Sbjct: 376 DTKQIISGSSDGSVYFYDYKSSLLVRKQKAFEHACIDVAIHPILPNVIASCSWNGNIAVF 435

Query: 121 Q 122
           Q
Sbjct: 436 Q 436

[Close]

BLAST of Lsi05G006450 vs. NCBI nr
Match: XP_038903500.1 (WD repeat-containing protein 25 [Benincasa hispida])

HSP 1 Score: 248.1 bits (632), Expect = 4.0e-62
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSL 60
           MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRY SHGVSGFPIKCNFSL
Sbjct: 318 MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL 377

Query: 61  DAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKIAVF 120
           DAKQIISGSSDGSIYFYDYKSSLL+HKLKA EQACIDIAIHPTLPNVIAS SWNGKI+VF
Sbjct: 378 DAKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACIDIAIHPTLPNVIASCSWNGKISVF 437

Query: 121 Q 122
           Q
Sbjct: 438 Q 438

[Close]

BLAST of Lsi05G006450 vs. NCBI nr
Match: XP_016901209.1 (PREDICTED: WD repeat-containing protein 25 isoform X1 [Cucumis melo])

HSP 1 Score: 245.4 bits (625), Expect = 2.6e-61
Identity = 115/121 (95.04%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSL 60
           MEAYTCPSVRCHPFDPAFIAQSNG YIAIFSLNPPFKLDKYKRY SHGVSGFPIKCNFSL
Sbjct: 318 MEAYTCPSVRCHPFDPAFIAQSNGDYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL 377

Query: 61  DAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKIAVF 120
           DAKQIISGSSDGSIYFYDYKSSLL+HKLKA EQACIDIAIHPTLPNVIAS SWNGKI+VF
Sbjct: 378 DAKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACIDIAIHPTLPNVIASCSWNGKISVF 437

Query: 121 Q 122
           Q
Sbjct: 438 Q 438

[Close]

BLAST of Lsi05G006450 vs. NCBI nr
Match: XP_031738523.1 (WD repeat-containing protein 25 isoform X2 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 3.4e-61
Identity = 115/121 (95.04%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSL 60
           MEAYTCPSVRCHP DPAFIAQSNGGYIAIFSLNPPFKLDKYKRY SHGVSGFPIKCNFSL
Sbjct: 264 MEAYTCPSVRCHPSDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL 323

Query: 61  DAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKIAVF 120
           DAKQIISGSSDGSIYFYDYKSSLL+HKLKA EQACIDIAIHPTLPNVIAS SWNGKI+VF
Sbjct: 324 DAKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACIDIAIHPTLPNVIASCSWNGKISVF 383

Query: 121 Q 122
           Q
Sbjct: 384 Q 384

[Close]

BLAST of Lsi05G006450 vs. NCBI nr
Match: XP_011650540.1 (WD repeat-containing protein 25 isoform X1 [Cucumis sativus] >KAE8650152.1 hypothetical protein Csa_009510 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 3.4e-61
Identity = 115/121 (95.04%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSL 60
           MEAYTCPSVRCHP DPAFIAQSNGGYIAIFSLNPPFKLDKYKRY SHGVSGFPIKCNFSL
Sbjct: 318 MEAYTCPSVRCHPSDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL 377

Query: 61  DAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKIAVF 120
           DAKQIISGSSDGSIYFYDYKSSLL+HKLKA EQACIDIAIHPTLPNVIAS SWNGKI+VF
Sbjct: 378 DAKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACIDIAIHPTLPNVIASCSWNGKISVF 437

Query: 121 Q 122
           Q
Sbjct: 438 Q 438

[Close]

BLAST of Lsi05G006450 vs. NCBI nr
Match: XP_011650541.1 (WD repeat-containing protein 25 isoform X3 [Cucumis sativus] >XP_031738524.1 WD repeat-containing protein 25 isoform X3 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 3.4e-61
Identity = 115/121 (95.04%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSL 60
           MEAYTCPSVRCHP DPAFIAQSNGGYIAIFSLNPPFKLDKYKRY SHGVSGFPIKCNFSL
Sbjct: 257 MEAYTCPSVRCHPSDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSL 316

Query: 61  DAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKIAVF 120
           DAKQIISGSSDGSIYFYDYKSSLL+HKLKA EQACIDIAIHPTLPNVIAS SWNGKI+VF
Sbjct: 317 DAKQIISGSSDGSIYFYDYKSSLLIHKLKASEQACIDIAIHPTLPNVIASCSWNGKISVF 376

Query: 121 Q 122
           Q
Sbjct: 377 Q 377

[Close]

BLAST of Lsi05G006450 vs. TAIR 10
Match: AT5G54520.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 183.7 bits (465), Expect = 8.6e-47
Identity = 77/121 (63.64%), Postives = 100/121 (82.64%), Query Frame = 0


Query: 1   MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSL 60
           +EAYTCP ++ HP DP FIAQS+G Y AIFS NPPFKL+KYKR+  H V+GFPIKCNFS 
Sbjct: 337 VEAYTCPCIKRHPQDPVFIAQSHGNYTAIFSTNPPFKLNKYKRFEGHWVAGFPIKCNFSP 396

Query: 61  DAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKIAVF 120
           D + + SGSSDGS+Y YDYKS+ L+ KLKA+EQ C++++ HP LPNV+A+ SWNG+++VF
Sbjct: 397 DGETLASGSSDGSVYMYDYKSTALIKKLKAYEQPCVNVSYHPVLPNVVAACSWNGQVSVF 456

Query: 121 Q 122
           +
Sbjct: 457 E 457

[Close]

BLAST of Lsi05G006450 vs. TAIR 10
Match: AT1G10580.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-16
Identity = 39/114 (34.21%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 4   YTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAK 63
           ++ PS+  HP      AQS    I I+S    F+L+K KR+  H V+G+  + NFS D +
Sbjct: 456 HSMPSISVHPNGNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 515

Query: 64  QIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIASSSWNGKI 118
            ++SG  +G  +F+D+KS  +   LK     CI    HP   + +A+  W+G I
Sbjct: 516 FVMSGDGEGKCWFWDWKSCKVFRTLKCHNGVCIGAEWHPLEQSKVATCGWDGLI 569

[Close]

BLAST of Lsi05G006450 vs. TAIR 10
Match: AT1G79990.3 (structural molecules )

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05
Identity = 34/109 (31.19%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 8   SVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQ-II 67
           SV  HP +P  +A    G + I++      +       S  V+  P++    +  KQ ++
Sbjct: 20  SVDLHPTEPWILASLYSGTLCIWNYQTQTMVK------SFDVTELPVRSAKFIARKQWVV 79

Query: 68  SGSSDGSIYFYDYKSSLLMHKLKAFEQACID----IAIHPTLPNVIASS 112
           +G+ D  I  Y+Y +   M K+K FE A  D    +A+HPTLP V++SS
Sbjct: 80  AGADDMFIRVYNYNT---MDKIKVFE-AHADYIRCVAVHPTLPYVLSSS 118

[Close]

BLAST of Lsi05G006450 vs. TAIR 10
Match: AT1G79990.1 (structural molecules )

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05
Identity = 34/109 (31.19%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 8   SVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQ-II 67
           SV  HP +P  +A    G + I++      +       S  V+  P++    +  KQ ++
Sbjct: 235 SVDLHPTEPWILASLYSGTLCIWNYQTQTMVK------SFDVTELPVRSAKFIARKQWVV 294

Query: 68  SGSSDGSIYFYDYKSSLLMHKLKAFEQACID----IAIHPTLPNVIASS 112
           +G+ D  I  Y+Y +   M K+K FE A  D    +A+HPTLP V++SS
Sbjct: 295 AGADDMFIRVYNYNT---MDKIKVFE-AHADYIRCVAVHPTLPYVLSSS 333

[Close]

BLAST of Lsi05G006450 vs. TAIR 10
Match: AT1G79990.5 (structural molecules )

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05
Identity = 34/109 (31.19%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 8   SVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQ-II 67
           SV  HP +P  +A    G + I++      +       S  V+  P++    +  KQ ++
Sbjct: 20  SVDLHPTEPWILASLYSGTLCIWNYQTQTMVK------SFDVTELPVRSAKFIARKQWVV 79

Query: 68  SGSSDGSIYFYDYKSSLLMHKLKAFEQACID----IAIHPTLPNVIASS 112
           +G+ D  I  Y+Y +   M K+K FE A  D    +A+HPTLP V++SS
Sbjct: 80  AGADDMFIRVYNYNT---MDKIKVFE-AHADYIRCVAVHPTLPYVLSSS 118

The following BLAST results are available for this feature:

BLAST of Lsi05G006450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q64LD2	1.0e-23	36.13	WD repeat-containing protein 25 OS=Homo sapiens OX=9606 GN=WDR25 PE=1 SV=3	[more]
E9Q349	3.8e-23	36.13	WD repeat-containing protein 25 OS=Mus musculus OX=10090 GN=Wdr25 PE=2 SV=1	[more]
O60508	8.8e-12	29.06	Pre-mRNA-processing factor 17 OS=Homo sapiens OX=9606 GN=CDC40 PE=1 SV=1	[more]
Q9DC48	8.8e-12	29.06	Pre-mRNA-processing factor 17 OS=Mus musculus OX=10090 GN=Cdc40 PE=2 SV=1	[more]
Q9CAA0	5.2e-04	31.19	Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2	[more]

BLAST of Lsi05G006450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DZ03	1.3e-61	95.04	WD repeat-containing protein 25 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034933...	[more]
A0A0A0L568	1.6e-61	95.04	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G...	[more]
A0A6J1FN47	1.0e-58	90.08	WD repeat-containing protein 25 OS=Cucurbita moschata OX=3662 GN=LOC111446958 PE...	[more]
A0A6J1JQD9	4.9e-58	89.26	WD repeat-containing protein 25 OS=Cucurbita maxima OX=3661 GN=LOC111488910 PE=4...	[more]
A0A6J1CMQ5	1.4e-57	87.60	WD repeat-containing protein 25 OS=Momordica charantia OX=3673 GN=LOC111012887 P...	[more]

BLAST of Lsi05G006450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903500.1	4.0e-62	95.87	WD repeat-containing protein 25 [Benincasa hispida]	[more]
XP_016901209.1	2.6e-61	95.04	PREDICTED: WD repeat-containing protein 25 isoform X1 [Cucumis melo]	[more]
XP_031738523.1	3.4e-61	95.04	WD repeat-containing protein 25 isoform X2 [Cucumis sativus]	[more]
XP_011650540.1	3.4e-61	95.04	WD repeat-containing protein 25 isoform X1 [Cucumis sativus] >KAE8650152.1 hypot...	[more]
XP_011650541.1	3.4e-61	95.04	WD repeat-containing protein 25 isoform X3 [Cucumis sativus] >XP_031738524.1 WD ...	[more]

BLAST of Lsi05G006450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54520.1	8.6e-47	63.64	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G10580.1	2.1e-16	34.21	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G79990.3	3.7e-05	31.19	structural molecules	[more]
AT1G79990.1	3.7e-05	31.19	structural molecules	[more]
AT1G79990.5	3.7e-05	31.19	structural molecules	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 81..121 e-value: 0.1 score: 21.7 coord: 37..78 e-value: 4.0 score: 13.2
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..121 e-value: 9.5E-22 score: 79.4
None	No IPR available	PANTHER	PTHR44566	TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN	coord: 2..121
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 7..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G006450.1	Lsi05G006450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding