Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCCAAGATTGTCTTTCTTGTGCTTCTTGGTGCTTTTCTCTGCACCACTTCTGCTTCTCGCAAGTTGAGTACTGCCTCTTTTCAAGATGCGAAGTTCTTTCACCGTCCCGGATTTGGGGGTGGCGGTTTGGGTGGAGGCGGTGGTGGAGGGTTTGGTGGAGGTGGAGGCGGAGGGTTAGGCGGTGGTTCGGGAGGTGGTTTTGGTGGAGGATCTGGATTTGGTGGTGGTCTTGGTGGTGGTGGAGGAGGAGGCGGTGGACTAGGCGGAGGGAGCGGTTTTGGAGGTGGAGCAGGATTCGGAGGAGGCTCTGGTGGAGGAGGTGGACTTGGTGGTGGTGGTGGTGGCGGCGGCGCTGGTGGTGGAGGAGGGTTTGGCGGTGGGGGTGGACTTGGGGGCGGAGCAGGCGGAGGGTTTGGTGGCGGGGCCGGTGCAGGAGGTGGATTTCCTTGA
mRNA sequence
ATGACTTCCAAGATTGTCTTTCTTGTGCTTCTTGGTGCTTTTCTCTGCACCACTTCTGCTTCTCGCAAGTTGAGTACTGCCTCTTTTCAAGATGCGAAGTTCTTTCACCGTCCCGGATTTGGGGGTGGCGGTTTGGGTGGAGGCGGTGGTGGAGGGTTTGGTGGAGGTGGAGGCGGAGGGTTAGGCGGTGGTTCGGGAGGTGGTTTTGGTGGAGGATCTGGATTTGGTGGTGGTCTTGGTGGTGGTGGAGGAGGAGGCGGTGGACTAGGCGGAGGGAGCGGTTTTGGAGGTGGAGCAGGATTCGGAGGAGGCTCTGGTGGAGGAGGTGGACTTGGTGGTGGTGGTGGTGGCGGCGGCGCTGGTGGTGGAGGAGGGTTTGGCGGTGGGGGTGGACTTGGGGGCGGAGCAGGCGGAGGGTTTGGTGGCGGGGCCGGTGCAGGAGGTGGATTTCCTTGA
Coding sequence (CDS)
ATGACTTCCAAGATTGTCTTTCTTGTGCTTCTTGGTGCTTTTCTCTGCACCACTTCTGCTTCTCGCAAGTTGAGTACTGCCTCTTTTCAAGATGCGAAGTTCTTTCACCGTCCCGGATTTGGGGGTGGCGGTTTGGGTGGAGGCGGTGGTGGAGGGTTTGGTGGAGGTGGAGGCGGAGGGTTAGGCGGTGGTTCGGGAGGTGGTTTTGGTGGAGGATCTGGATTTGGTGGTGGTCTTGGTGGTGGTGGAGGAGGAGGCGGTGGACTAGGCGGAGGGAGCGGTTTTGGAGGTGGAGCAGGATTCGGAGGAGGCTCTGGTGGAGGAGGTGGACTTGGTGGTGGTGGTGGTGGCGGCGGCGCTGGTGGTGGAGGAGGGTTTGGCGGTGGGGGTGGACTTGGGGGCGGAGCAGGCGGAGGGTTTGGTGGCGGGGCCGGTGCAGGAGGTGGATTTCCTTGA
Protein sequence
MTSKIVFLVLLGAFLCTTSASRKLSTASFQDAKFFHRPGFGGGGLGGGGGGGFGGGGGGGLGGGSGGGFGGGSGFGGGLGGGGGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGGGGGGGAGGGGGFGGGGGLGGGAGGGFGGGAGAGGGFP
Homology
BLAST of Lsi05G005530 vs. ExPASy TrEMBL
Match:
A0A5D3BB90 (Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002250 PE=4 SV=1)
HSP 1 Score: 107.1 bits (266), Expect = 6.7e-20
Identity = 134/159 (84.28%), Postives = 139/159 (87.42%), Query Frame = 0
Query: 1 MTSKIVFLVLLGAFLCTTSASRKLSTASFQDAKFFHRPGFGGGGLGGGGGGGFGGGGGGG 60
M SKIVFLV LGAFL +TS +RKLSTASFQD KFFHRP FGGGGLGGGGGGGFGGGGGGG
Sbjct: 1 MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60
Query: 61 LGGGSGGGFGGGSGFGGGLGG--------GGGGGGGLGGGSGFGGGAGFGGGSGGGGGLG 120
LGGGSGGGFGGGSGFGGG+GG GGGGGGG+GGGSGFGGGAGFGGGSGGGGGLG
Sbjct: 61 LGGGSGGGFGGGSGFGGGVGGGAGGGGGFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLG 120
Query: 121 GGGGGGGAGGGGGFGGGGGLGGGAGGGFGGGAGAGGGFP 152
GG GGGG GG GGGGGLGGGAGGGFGGGAGAGGG+P
Sbjct: 121 GGAGGGGGFGG---GGGGGLGGGAGGGFGGGAGAGGGYP 156
BLAST of Lsi05G005530 vs. ExPASy TrEMBL
Match:
A0A5A7VJD1 (Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G001320 PE=4 SV=1)
HSP 1 Score: 105.5 bits (262), Expect = 1.9e-19
Identity = 136/161 (84.47%), Postives = 139/161 (86.34%), Query Frame = 0
Query: 1 MTSKIVFLVLLGAFLCTTSASRKLSTASFQDAKFFHRPGFGGGGLGGGGGGGFGGGGGGG 60
M SKIVFLV LGAFL TTS +RKLSTASFQD KFFHRP +GGGGLGGGGGGGFGGGGGGG
Sbjct: 1 MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60
Query: 61 LGGGSGGGFGGGSGFGGGLGG----------GGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120
LGGGSGGGFGGGSGFGGG+GG GGGGGGGLGGGSGFGGGAGFGGGSGGGGG
Sbjct: 61 LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120
Query: 121 LGGGGGGGGAGGGGGFGGGGGLGGGAGGGFGGGAGAGGGFP 152
LGGGGG GG GG GG GGGGGLGGGAGGGFG GAG GGGFP
Sbjct: 121 LGGGGGAGGGGGFGG-GGGGGLGGGAGGGFGSGAGTGGGFP 160
BLAST of Lsi05G005530 vs. ExPASy TrEMBL
Match:
A0A0A0L2A7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G064240 PE=4 SV=1)
HSP 1 Score: 71.6 bits (174), Expect = 3.1e-09
Identity = 123/162 (75.93%), Postives = 128/162 (79.01%), Query Frame = 0
Query: 1 MTSKIVFLVLLGAFLCTTSASRKLSTASFQDAKFFHRPGFGGGGLGGGGGGGFGGGGGGG 60
M SKIVFLV LGAFL +TS +RKLSTASFQD KFF RP FGGGGLGGGGGGGFGGGGGGG
Sbjct: 1 MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFRRPRFGGGGLGGGGGGGFGGGGGGG 60
Query: 61 LGGGSGGGFGGGSGFGGGLGG--GGGGGGGLGGGSGFGGGAGFGGGSGGGGG-------- 120
LGGGSGGGFGGGSGFGGG+GG GGGGGGG GGG G G G G GGG GGG G
Sbjct: 61 LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAGDEKFFR 120
Query: 121 ---LGGGGGGGGAGGGGGFGGGGGLGGGAGGGFGGGAGAGGG 150
GGGG GGG GGG G GGGGGLGGG+GGGFGGG+G GGG
Sbjct: 121 RPRFGGGGLGGGGGGGFGGGGGGGLGGGSGGGFGGGSGFGGG 162
BLAST of Lsi05G005530 vs. ExPASy TrEMBL
Match:
A0A6J1DAT8 (glycine-rich protein 5 OS=Momordica charantia OX=3673 GN=LOC111019269 PE=4 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 2.7e-05
Identity = 118/152 (77.63%), Postives = 121/152 (79.61%), Query Frame = 0
Query: 1 MTSKIVFLVLLGAFLCTTSASRKLSTASFQDAKFFHRPGFGGGGLGGGGGGGFGGGGGGG 60
M SKI+FLVLL AFLCTTS +RKL+T SF D KFFHRPGFGGGG GGG GGG GGG GGG
Sbjct: 1 MASKILFLVLLSAFLCTTSWARKLTTTSFHDQKFFHRPGFGGGGGGGGFGGGGGGGLGGG 60
Query: 61 LGGGSGGGFGGGSGFGGGLGGG-GGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGG-GGGG 120
GGGSG G G G G GGG GGG GGGGGGLGGG G GGGA GGG GGG G GGG GGGG
Sbjct: 61 FGGGSGFGGGAGGGAGGGAGGGFGGGGGGLGGGGGIGGGA--GGGFGGGAGAGGGLGGGG 120
Query: 121 GAGGGGGFGGGGGLGGGAGGGFGGGAGAGGGF 151
GAGGGGGFGGG G G G G GFGGGAGAGGGF
Sbjct: 121 GAGGGGGFGGGRGGGLGGGSGFGGGAGAGGGF 150
BLAST of Lsi05G005530 vs. ExPASy TrEMBL
Match:
V7BKK6 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G046300g PE=4 SV=1)
HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04
Identity = 118/163 (72.39%), Postives = 128/163 (78.53%), Query Frame = 0
Query: 1 MTSKIVFLVLLGAFLCTTSASRKLST--ASFQDAK-FFHRPGFGGGGLGGGGGGGFGGGG 60
M S+++ +LGA +CT A RKL + SF+D K FFH PGF GGGLGGGGGGGFGGGG
Sbjct: 1 MASRVLLFAVLGALVCTIDA-RKLGSEKGSFRDEKNFFHHPGF-GGGLGGGGGGGFGGGG 60
Query: 61 GGGLGGGSGGGF----GGGSGFGGGLGGGG----GGGGGLGGGSGFGGGAGFGGGSGGGG 120
GGGLGGGSGGGF G G G GGGLGGGG GGGGG GGG+GFGGG+GFGGG+G GG
Sbjct: 61 GGGLGGGSGGGFGAGGGAGGGAGGGLGGGGGGGFGGGGGAGGGAGFGGGSGFGGGAGAGG 120
Query: 121 GLGGGGGGGGAGGGGGFGG-GGGLGGGAGGGFGGGAGAGGGFP 152
GLGGGGGGG GGGG GG G GLGGGAGGGFGGGAGAGGGFP
Sbjct: 121 GLGGGGGGGFGGGGGAGGGLGSGLGGGAGGGFGGGAGAGGGFP 161
BLAST of Lsi05G005530 vs. NCBI nr
Match:
KAA0065824.1 (glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYJ96563.1 glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 107.1 bits (266), Expect = 1.4e-19
Identity = 134/159 (84.28%), Postives = 139/159 (87.42%), Query Frame = 0
Query: 1 MTSKIVFLVLLGAFLCTTSASRKLSTASFQDAKFFHRPGFGGGGLGGGGGGGFGGGGGGG 60
M SKIVFLV LGAFL +TS +RKLSTASFQD KFFHRP FGGGGLGGGGGGGFGGGGGGG
Sbjct: 1 MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60
Query: 61 LGGGSGGGFGGGSGFGGGLGG--------GGGGGGGLGGGSGFGGGAGFGGGSGGGGGLG 120
LGGGSGGGFGGGSGFGGG+GG GGGGGGG+GGGSGFGGGAGFGGGSGGGGGLG
Sbjct: 61 LGGGSGGGFGGGSGFGGGVGGGAGGGGGFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLG 120
Query: 121 GGGGGGGAGGGGGFGGGGGLGGGAGGGFGGGAGAGGGFP 152
GG GGGG GG GGGGGLGGGAGGGFGGGAGAGGG+P
Sbjct: 121 GGAGGGGGFGG---GGGGGLGGGAGGGFGGGAGAGGGYP 156
BLAST of Lsi05G005530 vs. NCBI nr
Match:
KAA0065825.1 (glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 105.5 bits (262), Expect = 4.0e-19
Identity = 136/161 (84.47%), Postives = 139/161 (86.34%), Query Frame = 0
Query: 1 MTSKIVFLVLLGAFLCTTSASRKLSTASFQDAKFFHRPGFGGGGLGGGGGGGFGGGGGGG 60
M SKIVFLV LGAFL TTS +RKLSTASFQD KFFHRP +GGGGLGGGGGGGFGGGGGGG
Sbjct: 1 MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60
Query: 61 LGGGSGGGFGGGSGFGGGLGG----------GGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120
LGGGSGGGFGGGSGFGGG+GG GGGGGGGLGGGSGFGGGAGFGGGSGGGGG
Sbjct: 61 LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120
Query: 121 LGGGGGGGGAGGGGGFGGGGGLGGGAGGGFGGGAGAGGGFP 152
LGGGGG GG GG GG GGGGGLGGGAGGGFG GAG GGGFP
Sbjct: 121 LGGGGGAGGGGGFGG-GGGGGLGGGAGGGFGSGAGTGGGFP 160
BLAST of Lsi05G005530 vs. NCBI nr
Match:
XP_011650511.1 (glycine-rich cell wall structural protein-like [Cucumis sativus])
HSP 1 Score: 100.5 bits (249), Expect = 1.3e-17
Identity = 135/161 (83.85%), Postives = 138/161 (85.71%), Query Frame = 0
Query: 1 MTSKIVFLVLLGAFLCTTSASRKLSTASFQDAKFFHRPGFGGGGLGGGGGGGFGGGGGGG 60
M SKIVFLV LGAFL +TS +RKLSTASFQD KFF RP FGGGGLGGGGGGGFGGGGGGG
Sbjct: 1 MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFRRPRFGGGGLGGGGGGGFGGGGGGG 60
Query: 61 LGGGSGGGFGGGSGFGGGLGG----------GGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120
LGGGSGGGFGGGSGFGGG+GG GGGGGGGLGGGSGFGGGAGFGGGS GGG
Sbjct: 61 LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGS--GGG 120
Query: 121 LGGGGGGGGAGGGGGFGGGGGLGGGAGGGFGGGAGAGGGFP 152
LGGGGG GG GG GG GGGGGLGGGAGGGFGGGAGAGGGFP
Sbjct: 121 LGGGGGAGGGGGFGG-GGGGGLGGGAGGGFGGGAGAGGGFP 158
BLAST of Lsi05G005530 vs. NCBI nr
Match:
XP_022151305.1 (glycine-rich protein 5 [Momordica charantia])
HSP 1 Score: 58.5 bits (140), Expect = 5.6e-05
Identity = 118/152 (77.63%), Postives = 121/152 (79.61%), Query Frame = 0
Query: 1 MTSKIVFLVLLGAFLCTTSASRKLSTASFQDAKFFHRPGFGGGGLGGGGGGGFGGGGGGG 60
M SKI+FLVLL AFLCTTS +RKL+T SF D KFFHRPGFGGGG GGG GGG GGG GGG
Sbjct: 1 MASKILFLVLLSAFLCTTSWARKLTTTSFHDQKFFHRPGFGGGGGGGGFGGGGGGGLGGG 60
Query: 61 LGGGSGGGFGGGSGFGGGLGGG-GGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGG-GGGG 120
GGGSG G G G G GGG GGG GGGGGGLGGG G GGGA GGG GGG G GGG GGGG
Sbjct: 61 FGGGSGFGGGAGGGAGGGAGGGFGGGGGGLGGGGGIGGGA--GGGFGGGAGAGGGLGGGG 120
Query: 121 GAGGGGGFGGGGGLGGGAGGGFGGGAGAGGGF 151
GAGGGGGFGGG G G G G GFGGGAGAGGGF
Sbjct: 121 GAGGGGGFGGGRGGGLGGGSGFGGGAGAGGGF 150
BLAST of Lsi05G005530 vs. NCBI nr
Match:
KAG5027289.1 (hypothetical protein JHK86_023203 [Glycine max])
HSP 1 Score: 58.2 bits (139), Expect = 7.3e-05
Identity = 116/169 (68.64%), Postives = 127/169 (75.15%), Query Frame = 0
Query: 1 MTSKIVFLVLLGAFLCTTSASRKLST--ASFQDAK-FFHRPGF---GGGGLGGGGGGGFG 60
M S+++ L LLGA +CT +RKL + SF+D K FFHRPGF GGGG GGGGGGG G
Sbjct: 1 MASRVLLLALLGALVCTVIDARKLGSEKGSFRDEKNFFHRPGFGGGGGGGFGGGGGGGLG 60
Query: 61 GGGGGGLGGGSGGGFGGGS----------GFGGGLGGGGGGGGGLGGGSGFGGGAGFGGG 120
GG GGGLGGG+GGGFG G+ GFGGG GGG GGGGG+GGGSGFGGGAGFGGG
Sbjct: 61 GGAGGGLGGGAGGGFGAGAGAGAGGGAGGGFGGGGGGGFGGGGGVGGGSGFGGGAGFGGG 120
Query: 121 SGGGGGLGGGGGGGGAGGGGGFGGGGGLGGGAGGGFGG--GAGAGGGFP 152
+G GGGLGGGGGGG G GGGGGLGGGAGGGFGG GAGAGGGFP
Sbjct: 121 AGAGGGLGGGGGGGFGG-----GGGGGLGGGAGGGFGGGAGAGAGGGFP 164
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BB90 | 6.7e-20 | 84.28 | Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=11... | [more] |
A0A5A7VJD1 | 1.9e-19 | 84.47 | Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=11... | [more] |
A0A0A0L2A7 | 3.1e-09 | 75.93 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G064240 PE=4 SV=1 | [more] |
A0A6J1DAT8 | 2.7e-05 | 77.63 | glycine-rich protein 5 OS=Momordica charantia OX=3673 GN=LOC111019269 PE=4 SV=1 | [more] |
V7BKK6 | 1.8e-04 | 72.39 | Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G046300g PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |
KAA0065824.1 | 1.4e-19 | 84.28 | glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYJ96... | [more] |
KAA0065825.1 | 4.0e-19 | 84.47 | glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] | [more] |
XP_011650511.1 | 1.3e-17 | 83.85 | glycine-rich cell wall structural protein-like [Cucumis sativus] | [more] |
XP_022151305.1 | 5.6e-05 | 77.63 | glycine-rich protein 5 [Momordica charantia] | [more] |
KAG5027289.1 | 7.3e-05 | 68.64 | hypothetical protein JHK86_023203 [Glycine max] | [more] |
Match Name | E-value | Identity | Description | |