Lsi05G004840 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G004840
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionC2H2-type domain-containing protein
Locationchr05: 6156927 .. 6160975 (+)
RNA-Seq ExpressionLsi05G004840
SyntenyLsi05G004840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAAGGTCATATTAGATCCACAAGTTGAAAGTTTATTGATGTTTAAGACATTTATAAAAAGTCAGGGGCTAATTTGATCATAAAATTATTGTTTTTCAATTTAATCTTAAAAACTTTCAAAGTTAACAGAGAGGTATTAATAATGGATCCTTTCATTTTCATCTATGATATAATGTTTTAATTATTGAGCTATACTCCATATGGTTATTAACATATTTGAACGTATAGACACATATGCCTGATATGAAACATCACAATTAAACGGTGAGGATATGTTTGAATGTGGTCAAGTGGTTATAGGATGAAGTTGTGCCCTTTCATGTATGGGTTTGATTAAACCATACATATGAAACATCACGATCTAACAGTGGAGATATGTTTGAACAGACAATCACATCATTTGCCCATTACAATTATTCAATTGAAGTGGTGCATCCTTTTATGTATGAGTGTGATTTAGATCATCAATATGAAACGTCACAATCTAATGTGGACATATGTTTCAACAGATAATTACGTCATTCTTTCTTCAAATTTTCATAGAATTTATTTTATCCTTTTGTTCAAATAGTTACAACTGTTCAAGTCAAACAACGAAAAATAATTGCAAAGCTATCGATAAAACTATTAATCTTACACGTGCATCGCAGGTAACTTCTAACATCATACTCCTAAGCATAGTATTAAATTTCCATCGATATATCGAAATTTTCATCGATATTTTCATGTTTTCATAGGTTCGATATCGATATGAGGAGTGAATCGATATTTTCATTATATCCTAGAAAAATTCATGAAACACAAAAAATAAGCATCAAAATGCCACTTATATAAATATAATATAAATAATAGATTTATTTACTTATTTGAGAATAATAAAATGTTTATTTTCTATCTAGAAATATCCATCGAAATTTCGGTAAAATTAAGACCTTCATATTTCCTTCAACATCGATATTTTAAACATTGCTCCTAAGGGTAATATTGAAATTTCGATCCTAGGAAATTTTGTAGTTTAATAAATTACAAAATTTCCCATGATGTTTCCAAAATTAAGAAGTGGCCCTCAGTGTCTTCGGAGTTTTTCTAGTTTCTCTTAGAATCGGTTGCGTTCAGTTCCGCTCGACGCTCGTGGAGGTTCCATTACATCGACGATGGGAAGGCGATCCGTATGGGTTGCACTTCTCGTCTTTTCTTTTCTTCTTTCTTTGCGACTACACACAGTTTCTTCCACTCTTCCTCTTCAATCATTGATTCAGGTGCTTATTTTCGCCTATGAATTGAACTCCCTCTGTTAGATTCAAATTTTGCGACATGGGTCTCCTTTAATCCGTCTTCAAGCGTATTTTCACTGTTTGATTTCGTAAAAGAGCGATGGATTCGATTGGAAAATTCTGTACACTAAATACTCTAGAGTTTGATTTGGCTTCCTCACGACTTTGTTTATTTAATTAGATAATTTGTTGTAGAGTGTTCCCAATGTTTCTACATGAAGTCCAATGAAAGTTTGTTGATGGTGTTCTGTTAATTCATCTGGGAATCGAACTATTTGAAGTTGTCTGAACCAATCGTTATATTTTCGATCTCTTCTTATGCTCTTGTTCCACTGGAATTGTCTGTTAACATTAAAAGAATGAGGCGAAATCAACTCATTACTTCTCTGCAAAGTTCTGAGTTCATGTTTGTTTCATTTTCTTACTTTTTATGGTTGATTGCAATTTATTACTTGAGGAACATTATTTGATGTATGACCTTCTTTGTTGTCATTTTTCCCTAGGGTTCTAAAGATTCTGCCAGTGAAAGGTAATCTTTTGGTTTCTTTTTATAGTCAGCAATTGACTGTTCCCCCCCTCCCCCCCTTCTTTCGAGTTTTTAGTACTGGACTTAATGCGTTTATACAGACCTAAAGTTCTGAACCTTACAATCAACACAATAGCTTATTCCAAGTAGATGCTATGCTATGGAGTATTTTCCCTTTTGTTATGATGATAATAAAGTTAAATTTTTGGGCTTTGGAGTTGATGTTCAGTACTCCGAAGCAGGATTGGAACAATGCTCATGAGATACATTGCTCGAGAGAAAGGAGTAGGGCGGCGTGGAAAATAATTGAGGAGGTATCCATTCAACACTGGAATGGAGTTTCTTTATAATTAATTAATTGTCGATTGCTTGACATGCTTGGTATGTAATGATATGATACTTTATTAAACTAAATTGTAATGTTTTTATCTTGATGCAGTATCTAATACCCTTTGTGGAAAAAAAGAAATTCGAGATTTCTACTAAGTGTAGGCTTCACCCTGATAATGACATGTTCAGAGATCAAGAACAGCACAAGAGCCATCTAGATTTTAATGACTGGAAGTGTGGATATTGTAGAAAAAGATTCTATGAAGAGAAGTATCTCGATCAGCACTTTGACAATAGACACTATAATTTGCTCAATGCGGTAAGTTGCCGTTCATGATTCGACTTCCAACAATAGTAATGATAATTAGTTTGTTATATAAGATCACTATAGAACTTTCTTTTTAAATTGTGGGCTTCCATTAGTTCACTGTATCTAGTCAATTATCTTGGAGAAGTGGATATAACATGAGACTCAAGCTACAATATGTTTAGGCTTCTTGCCTACATAAACATATCTCAGTGGTTAAGGCATTTGCTCTTTCCCTTGAGGAAGGTTCAAATCCCCACCCCCACATTTGTTTTACTTTTAAAATATGTTTGGGCTTCTTTTCGGATATCAGATGGCTTGCATGATCCTTTCTTCCTTGTTCTTCAGGAGCATATCTCTTAGACATTAGAAAAGGCATTGTTTGCTTCAGTTTTAGCTGATGTAGCACTTTGATTATCTTGTTCATGTTTAATCCAGAGTCGAAGCAGGTGCTTGGCAGATCTTTGTGGTGCATTGCACTGTGACCATGTGATAGATACAGTATCACAGAAAAGTAAATGCAATCCTGCTGCTGCTGCGAGAAATAAACATATGTGTGAGGTGACATCAGAAGATTTCCTGCAGATCTCTTCTTTATTTCCTCATAATTCACCACACTTGAACGATTGTTAATTCATCGCAGGGTCTTGCTGACAGCTGTTTTCCCGTCGATGAGGGTGCTTTGGCCAGCCATCTTCACGGTAGCTTCAGGATTTCTCCACTCTCCTCATTTAACAACTTTAACTACTTCCATCATTTATCTAATGAAACACTTTTGGTGTAATTCAAATGGTAGAATTCTTCTTGCGCCAGTTCTGTGATGCACACACATGTAGCGGAAAGCCAAAACCTTTCTCCAGAGGTCGACAGGTAAGTTGTTTCATTGTAAATATGCATGCACACATGTAAAGCTCCTTTCAATCAGTTTCTTATGGTACATGATGCAAGTATGTTGAGCAATTTTCAAGATCTGGCATTGTTTTCTCTGATTTTGATTGACCATTGATATATGTGTATCATAATATCAACGTGCCTTTATGTAGGCAATGAACTATATCACATAGAGTGCGAAGTAGTAACTGTTTGATCAAACCATCTTTAAATCTGCATTTCACCAATTTATCTAATAATCAGTTTAAGTTCATCTAGTCGTTTTGTATCCTAACAGTCAGCAGGAAAACAGTTCGAACCATATTGCACGAATACATCATTTCTGTTTGAATCAAATTAGAGAGGGGATGAACATGTAATGCATATCTGTATTCCTTTTTTTGCACTTGTACTACTGAAAACCTCTGATGAAATTTCATGTTGTCAAATGCACATTCTTTTGTGTGCTTGCAGGCTAGGACGAGTGCGTTCTACATTGTGATTTCAGTTTTGACAGTCCTTTTCGTGCTGTTTTTCTATGTCTTCATTTACTTGTATAAGAGGTATCTTTCCTTCGCCTACCTTCATTTGTATGATCATAAGATCTTGAACTTTGGTTTGACGGTCGGGTTCGTCTTACAGGGGAATGAGAACTCGACCACAGGTGCTGAAGCGTCTCTCACAAAGTGGAAGAAAGAAAAAACCTTCATAGATAGAACCTTTTTGCCCTTTCAATAA

mRNA sequence

ATGAGTAAGAATCGGTTGCGTTCAGTTCCGCTCGACGCTCGTGGAGGTTCCATTACATCGACGATGGGAAGGCGATCCGTATGGGTTGCACTTCTCGTCTTTTCTTTTCTTCTTTCTTTGCGACTACACACAGTTTCTTCCACTCTTCCTCTTCAATCATTGATTCAGTTAAATTTTTGGGCTTTGGAGTTGATGTTCAGTACTCCGAAGCAGGATTGGAACAATGCTCATGAGATACATTGCTCGAGAGAAAGGAGTAGGGCGGCGTGGAAAATAATTGAGGAGTATCTAATACCCTTTGTGGAAAAAAAGAAATTCGAGATTTCTACTAAGTGTAGGCTTCACCCTGATAATGACATGTTCAGAGATCAAGAACAGCACAAGAGCCATCTAGATTTTAATGACTGGAAGTGTGGATATTGTAGAAAAAGATTCTATGAAGAGAAGTATCTCGATCAGCACTTTGACAATAGACACTATAATTTGCTCAATGCGAGTCGAAGCAGGTGCTTGGCAGATCTTTGTGGTGCATTGCACTGTGACCATGTGATAGATACAGTATCACAGAAAAGTAAATGCAATCCTGCTGCTGCTGCGAGAAATAAACATATGGTCTTGCTGACAGCTGTTTTCCCGTCGATGAGGGTGCTTTGGCCAGCCATCTTCACGGTAGCTTCAGGATTTCTCCACTCTCCTCATTTAACAACTTTAACTACTTCCATCATTTATCTAATGAAACACTTTTGGTGTAATTCAAATGAATTCTTCTTGCGCCAGTTCTGTGATGCACACACATGTAGCGGAAAGCCAAAACCTTTCTCCAGAGGTCGACAGGCTAGGACGAGTGCGTTCTACATTGTGATTTCAGTTTTGACAGTCCTTTTCGTGCTGTTTTTCTATGTCTTCATTTACTTGTATAAGAGGTATCTTTCCTTCGCCTACCTTCATTTGTATGATCATAAGATCTTGAACTTTGGTTTGACGGTCGGGTTCGTCTTACAGGGGAATGAGAACTCGACCACAGGTGCTGAAGCGTCTCTCACAAAGTGGAAGAAAGAAAAAACCTTCATAGATAGAACCTTTTTGCCCTTTCAATAA

Coding sequence (CDS)

ATGAGTAAGAATCGGTTGCGTTCAGTTCCGCTCGACGCTCGTGGAGGTTCCATTACATCGACGATGGGAAGGCGATCCGTATGGGTTGCACTTCTCGTCTTTTCTTTTCTTCTTTCTTTGCGACTACACACAGTTTCTTCCACTCTTCCTCTTCAATCATTGATTCAGTTAAATTTTTGGGCTTTGGAGTTGATGTTCAGTACTCCGAAGCAGGATTGGAACAATGCTCATGAGATACATTGCTCGAGAGAAAGGAGTAGGGCGGCGTGGAAAATAATTGAGGAGTATCTAATACCCTTTGTGGAAAAAAAGAAATTCGAGATTTCTACTAAGTGTAGGCTTCACCCTGATAATGACATGTTCAGAGATCAAGAACAGCACAAGAGCCATCTAGATTTTAATGACTGGAAGTGTGGATATTGTAGAAAAAGATTCTATGAAGAGAAGTATCTCGATCAGCACTTTGACAATAGACACTATAATTTGCTCAATGCGAGTCGAAGCAGGTGCTTGGCAGATCTTTGTGGTGCATTGCACTGTGACCATGTGATAGATACAGTATCACAGAAAAGTAAATGCAATCCTGCTGCTGCTGCGAGAAATAAACATATGGTCTTGCTGACAGCTGTTTTCCCGTCGATGAGGGTGCTTTGGCCAGCCATCTTCACGGTAGCTTCAGGATTTCTCCACTCTCCTCATTTAACAACTTTAACTACTTCCATCATTTATCTAATGAAACACTTTTGGTGTAATTCAAATGAATTCTTCTTGCGCCAGTTCTGTGATGCACACACATGTAGCGGAAAGCCAAAACCTTTCTCCAGAGGTCGACAGGCTAGGACGAGTGCGTTCTACATTGTGATTTCAGTTTTGACAGTCCTTTTCGTGCTGTTTTTCTATGTCTTCATTTACTTGTATAAGAGGTATCTTTCCTTCGCCTACCTTCATTTGTATGATCATAAGATCTTGAACTTTGGTTTGACGGTCGGGTTCGTCTTACAGGGGAATGAGAACTCGACCACAGGTGCTGAAGCGTCTCTCACAAAGTGGAAGAAAGAAAAAACCTTCATAGATAGAACCTTTTTGCCCTTTCAATAA

Protein sequence

MSKNRLRSVPLDARGGSITSTMGRRSVWVALLVFSFLLSLRLHTVSSTLPLQSLIQLNFWALELMFSTPKQDWNNAHEIHCSRERSRAAWKIIEEYLIPFVEKKKFEISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYNLLNASRSRCLADLCGALHCDHVIDTVSQKSKCNPAAAARNKHMVLLTAVFPSMRVLWPAIFTVASGFLHSPHLTTLTTSIIYLMKHFWCNSNEFFLRQFCDAHTCSGKPKPFSRGRQARTSAFYIVISVLTVLFVLFFYVFIYLYKRYLSFAYLHLYDHKILNFGLTVGFVLQGNENSTTGAEASLTKWKKEKTFIDRTFLPFQ
Homology
BLAST of Lsi05G004840 vs. ExPASy TrEMBL
Match: A0A5A7URM7 (Zinc finger family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00300 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 5.6e-113
Identity = 217/287 (75.61%), Postives = 229/287 (79.79%), Query Frame = 0

Query: 22  MGRRSVWVALLVFSFLLSLRLHTVSSTLPLQSLIQLNFWALELMFSTPKQDWNNAHEIHC 81
           MGRRS+ VALLVFS LLSLR HTVSSTLPLQSL Q +        STPKQDWNNAHE+HC
Sbjct: 1   MGRRSIRVALLVFSLLLSLRPHTVSSTLPLQSLNQGSNSKDSASGSTPKQDWNNAHEVHC 60

Query: 82  SRERSRAAWKIIEEYLIPFVEKKKFEISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 141
           SRERSRAAWK+IEEYL+PFVEKKK+EISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC
Sbjct: 61  SRERSRAAWKVIEEYLMPFVEKKKYEISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 120

Query: 142 RKRFYEEKYLDQHFDNRHYNLLNASRSRCLADLCGALHCDHVIDTVSQKSKCNPAAAARN 201
           RKRFYEEKY+DQHFDNRHYNLLN SR+RCLADLCGALHCDHVID VSQKSKCNPAAAARN
Sbjct: 121 RKRFYEEKYIDQHFDNRHYNLLNVSRNRCLADLCGALHCDHVIDAVSQKSKCNPAAAARN 180

Query: 202 KHMVLLTAVFPSMRVLWPAIFTVASGFLHSPHLTTLTTSIIYLMKHFWCNSNEFFLRQFC 261
           KHM            L  + F V  G L S HL                  +EFFLRQFC
Sbjct: 181 KHM---------CEGLADSCFPVDEGALAS-HL------------------HEFFLRQFC 240

Query: 262 DAHTCSGKPKPFSRGRQARTSAFYIVISVLTVLFVLFFYVFIYLYKR 309
           DAHTCSGKPKPFSRGRQ RTS FYIVISVLT+LFV+FFYVF YLY R
Sbjct: 241 DAHTCSGKPKPFSRGRQVRTSVFYIVISVLTILFVMFFYVFFYLYNR 259

BLAST of Lsi05G004840 vs. ExPASy TrEMBL
Match: A0A1S3BMS8 (uncharacterized protein LOC103491758 OS=Cucumis melo OX=3656 GN=LOC103491758 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 9.5e-113
Identity = 217/287 (75.61%), Postives = 229/287 (79.79%), Query Frame = 0

Query: 22  MGRRSVWVALLVFSFLLSLRLHTVSSTLPLQSLIQLNFWALELMFSTPKQDWNNAHEIHC 81
           MGRRS+ VALLVFS LLSLR HTVSSTLPLQS   LN  +     STPKQDWNNAHE+HC
Sbjct: 1   MGRRSIRVALLVFSLLLSLRPHTVSSTLPLQS---LNQGSNSASGSTPKQDWNNAHEVHC 60

Query: 82  SRERSRAAWKIIEEYLIPFVEKKKFEISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 141
           SRERSRAAWK+IEEYL+PFVEKKK+EISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC
Sbjct: 61  SRERSRAAWKVIEEYLMPFVEKKKYEISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 120

Query: 142 RKRFYEEKYLDQHFDNRHYNLLNASRSRCLADLCGALHCDHVIDTVSQKSKCNPAAAARN 201
           RKRFYEEKY+DQHFDNRHYNLLN SR+RCLADLCGALHCDHVID VSQKSKCNPAAAARN
Sbjct: 121 RKRFYEEKYIDQHFDNRHYNLLNVSRNRCLADLCGALHCDHVIDAVSQKSKCNPAAAARN 180

Query: 202 KHMVLLTAVFPSMRVLWPAIFTVASGFLHSPHLTTLTTSIIYLMKHFWCNSNEFFLRQFC 261
           KHM            L  + F V  G L S HL                  +EFFLRQFC
Sbjct: 181 KHM---------CEGLADSCFPVDEGALAS-HL------------------HEFFLRQFC 240

Query: 262 DAHTCSGKPKPFSRGRQARTSAFYIVISVLTVLFVLFFYVFIYLYKR 309
           DAHTCSGKPKPFSRGRQ RTS FYIVISVLT+LFV+FFYVF YLY R
Sbjct: 241 DAHTCSGKPKPFSRGRQVRTSVFYIVISVLTILFVMFFYVFFYLYNR 256

BLAST of Lsi05G004840 vs. ExPASy TrEMBL
Match: A0A0A0L8D2 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G592150 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 4.0e-111
Identity = 213/287 (74.22%), Postives = 227/287 (79.09%), Query Frame = 0

Query: 22  MGRRSVWVALLVFSFLLSLRLHTVSSTLPLQSLIQLNFWALELMFSTPKQDWNNAHEIHC 81
           MGRRS+ VALL+FS LLSLR HTVSSTLPLQSL Q +        STPKQDWNNAHE+HC
Sbjct: 1   MGRRSIRVALLIFSLLLSLRPHTVSSTLPLQSLNQGSNSKDSASESTPKQDWNNAHEVHC 60

Query: 82  SRERSRAAWKIIEEYLIPFVEKKKFEISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 141
           SRERSRAAWK+IEEYL+PFVEKKK++ISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC
Sbjct: 61  SRERSRAAWKVIEEYLMPFVEKKKYKISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 120

Query: 142 RKRFYEEKYLDQHFDNRHYNLLNASRSRCLADLCGALHCDHVIDTVSQKSKCNPAAAARN 201
           RKRFYEEKY+DQHFDNRHYNLLN SR+RCLADLCGALHCDHVID VSQKSKCNPAAAARN
Sbjct: 121 RKRFYEEKYIDQHFDNRHYNLLNVSRNRCLADLCGALHCDHVIDAVSQKSKCNPAAAARN 180

Query: 202 KHMVLLTAVFPSMRVLWPAIFTVASGFLHSPHLTTLTTSIIYLMKHFWCNSNEFFLRQFC 261
           KHM            L  + F V  G L S HL                  +EFFL QFC
Sbjct: 181 KHM---------CEGLADSCFPVDEGALAS-HL------------------HEFFLHQFC 240

Query: 262 DAHTCSGKPKPFSRGRQARTSAFYIVISVLTVLFVLFFYVFIYLYKR 309
           DAHTCSGKPKPFSRGRQ R S FYIVISVLT+LFV+FFYVF YLY R
Sbjct: 241 DAHTCSGKPKPFSRGRQVRRSVFYIVISVLTILFVMFFYVFFYLYNR 259

BLAST of Lsi05G004840 vs. ExPASy TrEMBL
Match: A0A6J1DL16 (uncharacterized protein LOC111021515 OS=Momordica charantia OX=3673 GN=LOC111021515 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 5.1e-106
Identity = 205/291 (70.45%), Postives = 230/291 (79.04%), Query Frame = 0

Query: 18  ITSTMGRRSVWVALLVFSFLLSLRLHTVSSTLPLQSLIQLNFWALELMFSTPKQDWNNAH 77
           +T+TMGRRS+WVALLV   LL +R H VSSTLPLQ LIQ +  +  L  STPKQD+NNAH
Sbjct: 1   MTATMGRRSIWVALLVPFLLLFMRPHGVSSTLPLQPLIQGSKDSAPL--STPKQDFNNAH 60

Query: 78  EIHCSRERSRAAWKIIEEYLIPFVEKKKFEISTKCRLHPDNDMFRDQEQHKSHLDFNDWK 137
           E+HCSRERSR AWKIIEEYL+PFV K+K++IST CRLHPDNDMFRDQEQHKSHLDFN+WK
Sbjct: 61  EVHCSRERSRVAWKIIEEYLMPFVNKRKYKISTDCRLHPDNDMFRDQEQHKSHLDFNEWK 120

Query: 138 CGYCRKRFYEEKYLDQHFDNRHYNLLNASRSRCLADLCGALHCDHVIDTVSQKSKCNPAA 197
           CGYCRKRFYEEKYLDQHFDNRHY+LLN SR +CLAD+CGALHCD V++TVSQKSKCNPAA
Sbjct: 121 CGYCRKRFYEEKYLDQHFDNRHYDLLNTSRIKCLADVCGALHCDRVVETVSQKSKCNPAA 180

Query: 198 AARNKHMVLLTAVFPSMRVLWPAIFTVASGFLHSPHLTTLTTSIIYLMKHFWCNSNEFFL 257
           AAR KHM           VL  + F VA G   + HL                  +EFFL
Sbjct: 181 AARKKHM---------CEVLADSCFPVAEG-ASASHL------------------HEFFL 240

Query: 258 RQFCDAHTCSGKPKPFSRGRQARTSAFYIVISVLTVLFVLFFYVFIYLYKR 309
           RQFCDAHTCSGKPKPFS+G++ RTS FYIVIS+LTVLFVLFFYVFIYLYKR
Sbjct: 241 RQFCDAHTCSGKPKPFSQGQEVRTSWFYIVISILTVLFVLFFYVFIYLYKR 261

BLAST of Lsi05G004840 vs. ExPASy TrEMBL
Match: A0A6J1F459 (uncharacterized protein LOC111441996 OS=Cucurbita moschata OX=3662 GN=LOC111441996 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 3.3e-105
Identity = 204/287 (71.08%), Postives = 224/287 (78.05%), Query Frame = 0

Query: 22  MGRRSVWVALLVFSFLLSLRLHTVSSTLPLQSLIQLNFWALELMFSTPKQDWNNAHEIHC 81
           MGRRS+WVALLV S LL  R H VSSTLPLQSL Q +        STPKQD NNAHE+HC
Sbjct: 1   MGRRSLWVALLVLSLLLYSRPHGVSSTLPLQSLNQGS--KDSATESTPKQDLNNAHEVHC 60

Query: 82  SRERSRAAWKIIEEYLIPFVEKKKFEISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 141
           SRERSRAAWKIIEEYL+PF++KK++++STKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC
Sbjct: 61  SRERSRAAWKIIEEYLMPFMDKKRYKVSTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 120

Query: 142 RKRFYEEKYLDQHFDNRHYNLLNASRSRCLADLCGALHCDHVIDTVSQKSKCNPAAAARN 201
           +K+FYEEKYLDQHF NRHY+LLN SRS+CLAD CGALHCD VIDT+SQKSKCNPAAAARN
Sbjct: 121 KKKFYEEKYLDQHFANRHYDLLNVSRSKCLADFCGALHCDRVIDTISQKSKCNPAAAARN 180

Query: 202 KHMVLLTAVFPSMRVLWPAIFTVASGFLHSPHLTTLTTSIIYLMKHFWCNSNEFFLRQFC 261
           KHM            L  + F +  G   + HL                  +EFFLRQFC
Sbjct: 181 KHM---------CEGLADSCFPIDDG-ASASHL------------------HEFFLRQFC 240

Query: 262 DAHTCSGKPKPFSRGRQARTSAFYIVISVLTVLFVLFFYVFIYLYKR 309
           DAHTCSGKPKPFSRGRQ RTS FYIVISVLTV+FVLFFYVFIYLYKR
Sbjct: 241 DAHTCSGKPKPFSRGRQVRTSVFYIVISVLTVIFVLFFYVFIYLYKR 257

BLAST of Lsi05G004840 vs. NCBI nr
Match: KAA0056275.1 (Zinc finger family protein [Cucumis melo var. makuwa] >TYK05224.1 Zinc finger family protein [Cucumis melo var. makuwa])

HSP 1 Score: 417.5 bits (1072), Expect = 1.2e-112
Identity = 217/287 (75.61%), Postives = 229/287 (79.79%), Query Frame = 0

Query: 22  MGRRSVWVALLVFSFLLSLRLHTVSSTLPLQSLIQLNFWALELMFSTPKQDWNNAHEIHC 81
           MGRRS+ VALLVFS LLSLR HTVSSTLPLQSL Q +        STPKQDWNNAHE+HC
Sbjct: 1   MGRRSIRVALLVFSLLLSLRPHTVSSTLPLQSLNQGSNSKDSASGSTPKQDWNNAHEVHC 60

Query: 82  SRERSRAAWKIIEEYLIPFVEKKKFEISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 141
           SRERSRAAWK+IEEYL+PFVEKKK+EISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC
Sbjct: 61  SRERSRAAWKVIEEYLMPFVEKKKYEISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 120

Query: 142 RKRFYEEKYLDQHFDNRHYNLLNASRSRCLADLCGALHCDHVIDTVSQKSKCNPAAAARN 201
           RKRFYEEKY+DQHFDNRHYNLLN SR+RCLADLCGALHCDHVID VSQKSKCNPAAAARN
Sbjct: 121 RKRFYEEKYIDQHFDNRHYNLLNVSRNRCLADLCGALHCDHVIDAVSQKSKCNPAAAARN 180

Query: 202 KHMVLLTAVFPSMRVLWPAIFTVASGFLHSPHLTTLTTSIIYLMKHFWCNSNEFFLRQFC 261
           KHM            L  + F V  G L S HL                  +EFFLRQFC
Sbjct: 181 KHM---------CEGLADSCFPVDEGALAS-HL------------------HEFFLRQFC 240

Query: 262 DAHTCSGKPKPFSRGRQARTSAFYIVISVLTVLFVLFFYVFIYLYKR 309
           DAHTCSGKPKPFSRGRQ RTS FYIVISVLT+LFV+FFYVF YLY R
Sbjct: 241 DAHTCSGKPKPFSRGRQVRTSVFYIVISVLTILFVMFFYVFFYLYNR 259

BLAST of Lsi05G004840 vs. NCBI nr
Match: XP_008450049.1 (PREDICTED: uncharacterized protein LOC103491758 [Cucumis melo])

HSP 1 Score: 416.8 bits (1070), Expect = 2.0e-112
Identity = 217/287 (75.61%), Postives = 229/287 (79.79%), Query Frame = 0

Query: 22  MGRRSVWVALLVFSFLLSLRLHTVSSTLPLQSLIQLNFWALELMFSTPKQDWNNAHEIHC 81
           MGRRS+ VALLVFS LLSLR HTVSSTLPLQS   LN  +     STPKQDWNNAHE+HC
Sbjct: 1   MGRRSIRVALLVFSLLLSLRPHTVSSTLPLQS---LNQGSNSASGSTPKQDWNNAHEVHC 60

Query: 82  SRERSRAAWKIIEEYLIPFVEKKKFEISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 141
           SRERSRAAWK+IEEYL+PFVEKKK+EISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC
Sbjct: 61  SRERSRAAWKVIEEYLMPFVEKKKYEISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 120

Query: 142 RKRFYEEKYLDQHFDNRHYNLLNASRSRCLADLCGALHCDHVIDTVSQKSKCNPAAAARN 201
           RKRFYEEKY+DQHFDNRHYNLLN SR+RCLADLCGALHCDHVID VSQKSKCNPAAAARN
Sbjct: 121 RKRFYEEKYIDQHFDNRHYNLLNVSRNRCLADLCGALHCDHVIDAVSQKSKCNPAAAARN 180

Query: 202 KHMVLLTAVFPSMRVLWPAIFTVASGFLHSPHLTTLTTSIIYLMKHFWCNSNEFFLRQFC 261
           KHM            L  + F V  G L S HL                  +EFFLRQFC
Sbjct: 181 KHM---------CEGLADSCFPVDEGALAS-HL------------------HEFFLRQFC 240

Query: 262 DAHTCSGKPKPFSRGRQARTSAFYIVISVLTVLFVLFFYVFIYLYKR 309
           DAHTCSGKPKPFSRGRQ RTS FYIVISVLT+LFV+FFYVF YLY R
Sbjct: 241 DAHTCSGKPKPFSRGRQVRTSVFYIVISVLTILFVMFFYVFFYLYNR 256

BLAST of Lsi05G004840 vs. NCBI nr
Match: XP_038891552.1 (uncharacterized protein LOC120080934 [Benincasa hispida])

HSP 1 Score: 416.4 bits (1069), Expect = 2.6e-112
Identity = 218/287 (75.96%), Postives = 229/287 (79.79%), Query Frame = 0

Query: 22  MGRRSVWVALLVFSFLLSLRLHTVSSTLPLQSLIQLNFWALELMFSTPKQDWNNAHEIHC 81
           MGRRSVWVALLVF  LLSLR HTVSS LPLQ+L Q   +      STPKQDWNNAHE+HC
Sbjct: 2   MGRRSVWVALLVFYLLLSLRPHTVSSVLPLQALNQ--GFKDSASESTPKQDWNNAHEVHC 61

Query: 82  SRERSRAAWKIIEEYLIPFVEKKKFEISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 141
           SRERSRAAWKIIEEYL+PFVEKKK++IS+KCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC
Sbjct: 62  SRERSRAAWKIIEEYLMPFVEKKKYKISSKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 121

Query: 142 RKRFYEEKYLDQHFDNRHYNLLNASRSRCLADLCGALHCDHVIDTVSQKSKCNPAAAARN 201
           RKRFYEEKYLDQHFDNRHYNLLN SRSRCLADLCGALHCDHVIDTVSQKSKCNPAAAARN
Sbjct: 122 RKRFYEEKYLDQHFDNRHYNLLNVSRSRCLADLCGALHCDHVIDTVSQKSKCNPAAAARN 181

Query: 202 KHMVLLTAVFPSMRVLWPAIFTVASGFLHSPHLTTLTTSIIYLMKHFWCNSNEFFLRQFC 261
           KHM            L  + F V  G   + HL                  +EFFLRQFC
Sbjct: 182 KHM---------CEGLADSCFPVDEG-ASASHL------------------HEFFLRQFC 241

Query: 262 DAHTCSGKPKPFSRGRQARTSAFYIVISVLTVLFVLFFYVFIYLYKR 309
           DAHTCSGKPKPFSRGRQ R + FYIVISVLTVLFVLFFYVFIYLYKR
Sbjct: 242 DAHTCSGKPKPFSRGRQVRKNVFYIVISVLTVLFVLFFYVFIYLYKR 258

BLAST of Lsi05G004840 vs. NCBI nr
Match: XP_004145681.1 (uncharacterized protein LOC101219582 [Cucumis sativus] >KGN58210.1 hypothetical protein Csa_017409 [Cucumis sativus])

HSP 1 Score: 411.4 bits (1056), Expect = 8.3e-111
Identity = 213/287 (74.22%), Postives = 227/287 (79.09%), Query Frame = 0

Query: 22  MGRRSVWVALLVFSFLLSLRLHTVSSTLPLQSLIQLNFWALELMFSTPKQDWNNAHEIHC 81
           MGRRS+ VALL+FS LLSLR HTVSSTLPLQSL Q +        STPKQDWNNAHE+HC
Sbjct: 1   MGRRSIRVALLIFSLLLSLRPHTVSSTLPLQSLNQGSNSKDSASESTPKQDWNNAHEVHC 60

Query: 82  SRERSRAAWKIIEEYLIPFVEKKKFEISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 141
           SRERSRAAWK+IEEYL+PFVEKKK++ISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC
Sbjct: 61  SRERSRAAWKVIEEYLMPFVEKKKYKISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 120

Query: 142 RKRFYEEKYLDQHFDNRHYNLLNASRSRCLADLCGALHCDHVIDTVSQKSKCNPAAAARN 201
           RKRFYEEKY+DQHFDNRHYNLLN SR+RCLADLCGALHCDHVID VSQKSKCNPAAAARN
Sbjct: 121 RKRFYEEKYIDQHFDNRHYNLLNVSRNRCLADLCGALHCDHVIDAVSQKSKCNPAAAARN 180

Query: 202 KHMVLLTAVFPSMRVLWPAIFTVASGFLHSPHLTTLTTSIIYLMKHFWCNSNEFFLRQFC 261
           KHM            L  + F V  G L S HL                  +EFFL QFC
Sbjct: 181 KHM---------CEGLADSCFPVDEGALAS-HL------------------HEFFLHQFC 240

Query: 262 DAHTCSGKPKPFSRGRQARTSAFYIVISVLTVLFVLFFYVFIYLYKR 309
           DAHTCSGKPKPFSRGRQ R S FYIVISVLT+LFV+FFYVF YLY R
Sbjct: 241 DAHTCSGKPKPFSRGRQVRRSVFYIVISVLTILFVMFFYVFFYLYNR 259

BLAST of Lsi05G004840 vs. NCBI nr
Match: XP_022154197.1 (uncharacterized protein LOC111021515 [Momordica charantia])

HSP 1 Score: 394.4 bits (1012), Expect = 1.0e-105
Identity = 205/291 (70.45%), Postives = 230/291 (79.04%), Query Frame = 0

Query: 18  ITSTMGRRSVWVALLVFSFLLSLRLHTVSSTLPLQSLIQLNFWALELMFSTPKQDWNNAH 77
           +T+TMGRRS+WVALLV   LL +R H VSSTLPLQ LIQ +  +  L  STPKQD+NNAH
Sbjct: 1   MTATMGRRSIWVALLVPFLLLFMRPHGVSSTLPLQPLIQGSKDSAPL--STPKQDFNNAH 60

Query: 78  EIHCSRERSRAAWKIIEEYLIPFVEKKKFEISTKCRLHPDNDMFRDQEQHKSHLDFNDWK 137
           E+HCSRERSR AWKIIEEYL+PFV K+K++IST CRLHPDNDMFRDQEQHKSHLDFN+WK
Sbjct: 61  EVHCSRERSRVAWKIIEEYLMPFVNKRKYKISTDCRLHPDNDMFRDQEQHKSHLDFNEWK 120

Query: 138 CGYCRKRFYEEKYLDQHFDNRHYNLLNASRSRCLADLCGALHCDHVIDTVSQKSKCNPAA 197
           CGYCRKRFYEEKYLDQHFDNRHY+LLN SR +CLAD+CGALHCD V++TVSQKSKCNPAA
Sbjct: 121 CGYCRKRFYEEKYLDQHFDNRHYDLLNTSRIKCLADVCGALHCDRVVETVSQKSKCNPAA 180

Query: 198 AARNKHMVLLTAVFPSMRVLWPAIFTVASGFLHSPHLTTLTTSIIYLMKHFWCNSNEFFL 257
           AAR KHM           VL  + F VA G   + HL                  +EFFL
Sbjct: 181 AARKKHM---------CEVLADSCFPVAEG-ASASHL------------------HEFFL 240

Query: 258 RQFCDAHTCSGKPKPFSRGRQARTSAFYIVISVLTVLFVLFFYVFIYLYKR 309
           RQFCDAHTCSGKPKPFS+G++ RTS FYIVIS+LTVLFVLFFYVFIYLYKR
Sbjct: 241 RQFCDAHTCSGKPKPFSQGQEVRTSWFYIVISILTVLFVLFFYVFIYLYKR 261

BLAST of Lsi05G004840 vs. TAIR 10
Match: AT5G40710.1 (zinc finger (C2H2 type) family protein )

HSP 1 Score: 248.4 bits (633), Expect = 8.6e-66
Identity = 126/265 (47.55%), Postives = 173/265 (65.28%), Query Frame = 0

Query: 55  IQLNFWALELMFSTPKQDW-------NNAHEIHCSRERSRAAWKIIEEYLIPFVEKKKFE 114
           I   FW   L  S  +Q+        +  HEIHCSRERSR AWKII+EYL+P+VEK++++
Sbjct: 19  ISSQFWGFSLPTSIIQQNLEGFKDPEDGFHEIHCSRERSRVAWKIIQEYLMPYVEKERYQ 78

Query: 115 ISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYNLLNASR 174
           + + CR+H DND++R+QE+HK   D N+W+CG+C+K FYEEKYLD+HFD+RHYNLLNAS 
Sbjct: 79  LPSTCRVHRDNDIYREQEEHKLRSDINEWRCGFCKKAFYEEKYLDKHFDSRHYNLLNASH 138

Query: 175 SRCLADLCGALHCDHVIDTVSQKSKCNPAAAARNKHMV--LLTAVFPSMRVLWPAIFTVA 234
            +CL+DLCGALHCD V+DT   KSKCNPAAAA+N+H+   L  + FP  +         +
Sbjct: 139 GKCLSDLCGALHCDLVVDTARLKSKCNPAAAAKNRHLCESLANSCFPVNK-------GSS 198

Query: 235 SGFLHSPHLTTLTTSIIYLMKHFWCNSNEFFLRQFCDAHTCSGKPKPFSRGRQARTSAFY 294
           +  LH                       +FFLRQFCDAHTCSG  KP S+ +  + S  Y
Sbjct: 199 ANRLH-----------------------DFFLRQFCDAHTCSGGSKPLSQ-KPKKRSIVY 252

Query: 295 IVISVLTVLFVLFFYVFIYLYKRYL 311
           I+ S++ ++ +L +Y F+YL++R L
Sbjct: 259 IIFSIIVLVVLLLYYSFVYLFRRGL 252

BLAST of Lsi05G004840 vs. TAIR 10
Match: AT5G63280.1 (C2H2-like zinc finger protein )

HSP 1 Score: 248.4 bits (633), Expect = 8.6e-66
Identity = 133/287 (46.34%), Postives = 181/287 (63.07%), Query Frame = 0

Query: 22  MGRRSVWVALLVFSFLLSLRLHTVSSTLPLQSLIQLNFWALELMFSTPKQDWNNAHEIHC 81
           MGR  +W +L V   LL L LH        QS+ Q    +        + + +NA EIHC
Sbjct: 1   MGR--LWESLPVILLLLVLLLH--------QSVSQGFEESESTRLVNEEVEVSNAPEIHC 60

Query: 82  SRERSRAAWKIIEEYLIPFVEKKKFEISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYC 141
           SRERSRAAW+II++YL PFVE++++EI   CRLHPDND++RDQE HK H+D  +WKCGYC
Sbjct: 61  SRERSRAAWQIIQDYLTPFVERERYEIPKNCRLHPDNDLYRDQEHHKVHVDVFEWKCGYC 120

Query: 142 RKRFYEEKYLDQHFDNRHYNLLNASRSRCLADLCGALHCDHVIDTVSQKSKCNPAAAARN 201
           +K F +EK+LD+HF  RHYNLLN + ++CLADLCGALHCD V+ +   KSKCNP A A+N
Sbjct: 121 KKSFNDEKFLDKHFSTRHYNLLNTTDTKCLADLCGALHCDFVLSSKKPKSKCNPPAVAKN 180

Query: 202 KHMVLLTAVFPSMRVLWPAIFTVASGFLHSPHLTTLTTSIIYLMKHFWCNSNEFFLRQFC 261
           +H+    A          + F V+ G    P  + L               +E FLRQFC
Sbjct: 181 RHLCESVA---------NSCFPVSQG----PSASRL---------------HEHFLRQFC 240

Query: 262 DAHTCSGKPKPFSRGRQARTSAFYIVISVLTVLFVLFFYVFIYLYKR 309
           DAHTC+G  KPF RG + ++  FY+ IS+LT++ +  FY+ ++L++R
Sbjct: 241 DAHTCTGNDKPFPRGGKKKSGVFYLAISILTLMLLPLFYLLVFLHQR 249

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7URM75.6e-11375.61Zinc finger family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A1S3BMS89.5e-11375.61uncharacterized protein LOC103491758 OS=Cucumis melo OX=3656 GN=LOC103491758 PE=... [more]
A0A0A0L8D24.0e-11174.22C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G592150 P... [more]
A0A6J1DL165.1e-10670.45uncharacterized protein LOC111021515 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1F4593.3e-10571.08uncharacterized protein LOC111441996 OS=Cucurbita moschata OX=3662 GN=LOC1114419... [more]
Match NameE-valueIdentityDescription
KAA0056275.11.2e-11275.61Zinc finger family protein [Cucumis melo var. makuwa] >TYK05224.1 Zinc finger fa... [more]
XP_008450049.12.0e-11275.61PREDICTED: uncharacterized protein LOC103491758 [Cucumis melo][more]
XP_038891552.12.6e-11275.96uncharacterized protein LOC120080934 [Benincasa hispida][more]
XP_004145681.18.3e-11174.22uncharacterized protein LOC101219582 [Cucumis sativus] >KGN58210.1 hypothetical ... [more]
XP_022154197.11.0e-10570.45uncharacterized protein LOC111021515 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT5G40710.18.6e-6647.55zinc finger (C2H2 type) family protein [more]
AT5G63280.18.6e-6646.34C2H2-like zinc finger protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21385ZINC FINGER PROTEIN-RELATEDcoord: 253..310
coord: 64..205
NoneNo IPR availablePANTHERPTHR21385:SF5TRANSCRIPTION FACTOR C2H2 FAMILY-RELATEDcoord: 253..310
coord: 64..205
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 138..159

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G004840.1Lsi05G004840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane