Lsi05G000590 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G000590
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Prolamin_like domain-containing protein
Location	chr05: 1177027 .. 1177410 (-)
RNA-Seq Expression	Lsi05G000590
Synteny	Lsi05G000590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAATCGGTTCAATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGATTCAATCGGCTTTCGCTGTTAGAAAGATTCCGGAGGCGATTTATTCAGCCGATTGGTCGGCGGCGGCTTGTTGGGACGCGATAAAGGCGGTGGAAGGATGCGAGGACGAGATCGACATGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGCTGTCGAGTGATATTACATGGATTGCCGGAGAAATGCACCGCCGTGGTTTTTTCGTCTGGCGGAGAGTTTTCGCCGGAGATTAGCGGTGCGGTGAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAGACGGAGGATAAAGTAGAAGAAAATTGA

mRNA sequence

ATGTCGAAATCGGTTCAATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGATTCAATCGGCTTTCGCTGTTAGAAAGATTCCGGAGGCGATTTATTCAGCCGATTGGTCGGCGGCGGCTTGTTGGGACGCGATAAAGGCGGTGGAAGGATGCGAGGACGAGATCGACATGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGCTGTCGAGTGATATTACATGGATTGCCGGAGAAATGCACCGCCGTGGTTTTTTCGTCTGGCGGAGAGTTTTCGCCGGAGATTAGCGGTGCGGTGAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAGACGGAGGATAAAGTAGAAGAAAATTGA

Coding sequence (CDS)

ATGTCGAAATCGGTTCAATTTTTCGGATTCTTCCTCTGTGCCCTAGCAATTTCATCGTCGATTCAATCGGCTTTCGCTGTTAGAAAGATTCCGGAGGCGATTTATTCAGCCGATTGGTCGGCGGCGGCTTGTTGGGACGCGATAAAGGCGGTGGAAGGATGCGAGGACGAGATCGACATGGCGATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGCTGTCGAGTGATATTACATGGATTGCCGGAGAAATGCACCGCCGTGGTTTTTTCGTCTGGCGGAGAGTTTTCGCCGGAGATTAGCGGTGCGGTGAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAGACGGAGGATAAAGTAGAAGAAAATTGA

Protein sequence

MSKSVQFFGFFLCALAISSSIQSAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEIDMAMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVLETEDKVEEN

Homology

[Close]

BLAST of Lsi05G000590 vs. ExPASy TrEMBL
Match: A0A5A7TB28 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004160 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.5e-52
Identity = 107/128 (83.59%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MSKSVQFFGFFLCALAISSSIQSAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEIDM 60
           MSKS +FFGFFLCALAISSS QSAFAVRKI EA+YSAD     CWDAI AVEGC+++ID 
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQIDT 60

Query: 61  AMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVLET 120
           AMKSNEIEVSYDCC+VILHG+PEKC AVVFSSGGEFSPE+SGAVNEYCDGMGITPPVLET
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLET 120

Query: 121 ED-KVEEN 128
           ED KV+EN
Sbjct: 121 EDTKVDEN 123

[Close]

BLAST of Lsi05G000590 vs. ExPASy TrEMBL
Match: A0A0A0LEG0 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 8.0e-51
Identity = 104/128 (81.25%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MSKSVQFFGFFLCALAISSSIQSAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEIDM 60
           MSKSV+FFGFFLC LA SSS  SAFAVRKI EA+YS+D     CWDAI AV+GC++EID 
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSD-----CWDAINAVKGCQNEIDT 60

Query: 61  AMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVLET 120
           AMKSNEIEVSYDCC+VILHG+PEKC AVVFSSGGEFSP++SGAVNEYCDGMGITPPVLET
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLET 120

Query: 121 ED-KVEEN 128
           ED KVEEN
Sbjct: 121 EDTKVEEN 123

[Close]

BLAST of Lsi05G000590 vs. ExPASy TrEMBL
Match: A0A6J1EX44 (uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC111437329 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.2e-47
Identity = 102/124 (82.26%), Postives = 109/124 (87.90%), Query Frame = 0


Query: 1   MSKSVQFFGFFLCALAISSSIQ--SAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEI 60
           M KSV+F GF L ALAISSSIQ  SAFA+R IPEA+ SADWSAA CWDAI AVEGC+DEI
Sbjct: 1   MLKSVRFVGFLL-ALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEI 60

Query: 61  DMAMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVL 120
           DMAMKSNEIEVS DCCR ILHGLP+KC A VFSSGGEFS EISGAVNEYCDGMGITPPVL
Sbjct: 61  DMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVL 120

Query: 121 ETED 123
           ET++
Sbjct: 121 ETDE 123

[Close]

BLAST of Lsi05G000590 vs. NCBI nr
Match: KAA0038539.1 (hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136.1 hypothetical protein E5676_scaffold455G004160 [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 5.2e-52
Identity = 107/128 (83.59%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MSKSVQFFGFFLCALAISSSIQSAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEIDM 60
           MSKS +FFGFFLCALAISSS QSAFAVRKI EA+YSAD     CWDAI AVEGC+++ID 
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSAD-----CWDAINAVEGCQNQIDT 60

Query: 61  AMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVLET 120
           AMKSNEIEVSYDCC+VILHG+PEKC AVVFSSGGEFSPE+SGAVNEYCDGMGITPPVLET
Sbjct: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLET 120

Query: 121 ED-KVEEN 128
           ED KV+EN
Sbjct: 121 EDTKVDEN 123

[Close]

BLAST of Lsi05G000590 vs. NCBI nr
Match: XP_022931003.1 (uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothetical protein SDJN03_03548, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197.6 bits (501), Expect = 6.5e-47
Identity = 102/124 (82.26%), Postives = 109/124 (87.90%), Query Frame = 0


Query: 1   MSKSVQFFGFFLCALAISSSIQ--SAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEI 60
           M KSV+F GF L ALAISSSIQ  SAFA+R IPEA+ SADWSAA CWDAI AVEGC+DEI
Sbjct: 1   MLKSVRFVGFLL-ALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEI 60

Query: 61  DMAMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVL 120
           DMAMKSNEIEVS DCCR ILHGLP+KC A VFSSGGEFS EISGAVNEYCDGMGITPPVL
Sbjct: 61  DMAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVL 120

Query: 121 ETED 123
           ET++
Sbjct: 121 ETDE 123

[Close]

BLAST of Lsi05G000590 vs. NCBI nr
Match: KAG6571831.1 (hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192.2 bits (487), Expect = 2.7e-45
Identity = 96/118 (81.36%), Postives = 103/118 (87.29%), Query Frame = 0


Query: 1   MSKSVQFFGFFLCALAISSSIQSAFAVRKIPEAIYSADWSAAACWDAIKAVEGCEDEIDM 60
           MSKSV+FFGFFL AL ISS I SAFA+RK P+AI SADWS AAC DA+ AVEGC+ EIDM
Sbjct: 1   MSKSVRFFGFFLLALTISSLIHSAFALRKFPKAIDSADWSTAACLDALNAVEGCQGEIDM 60

Query: 61  AMKSNEIEVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVL 119
           A+ SNEIEVSY+CCRVILHGLPEKC AVVFSSGGE S EISGAV EYCDGMGITPPVL
Sbjct: 61  AINSNEIEVSYNCCRVILHGLPEKCAAVVFSSGGESSSEISGAVKEYCDGMGITPPVL 118

[Close]

BLAST of Lsi05G000590 vs. NCBI nr
Match: KAE8652857.1 (hypothetical protein Csa_023774, partial [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 5.0e-23
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 68  EVSYDCCRVILHGLPEKCTAVVFSSGGEFSPEISGAVNEYCDGMGITPPVLETED-KVEE 127
           +VSYDCC+VILHG+PEKC AVVFSSGGEFSP++SGAVNEYCDGMGITPPVLETED KVEE
Sbjct: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 65

The following BLAST results are available for this feature:

BLAST of Lsi05G000590 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G000590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TB28	2.5e-52	83.59	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0LEG0	8.0e-51	81.25	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G9040...	[more]
A0A6J1EX44	3.2e-47	82.26	uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC1114373...	[more]

BLAST of Lsi05G000590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038539.1	5.2e-52	83.59	hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136...	[more]
XP_022931003.1	6.5e-47	82.26	uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothet...	[more]
KAG6571831.1	2.7e-45	81.36	hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652857.1	5.0e-23	88.52	hypothetical protein Csa_023774, partial [Cucumis sativus]	[more]

BLAST of Lsi05G000590 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 44..109 e-value: 7.1E-9 score: 35.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G000590.1	Lsi05G000590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity