Lsi05G000510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G000510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	vacuolar protein sorting-associated protein 55 homolog
Location	chr05: 1039864 .. 1045167 (-)
RNA-Seq Expression	Lsi05G000510
Synteny	Lsi05G000510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAAGGGAAACATTTCCTAATCAAAATTAAAGGCTGGGCTGAAGGATAGTTTGAAGTAAACACATCAAATGGAAGGGCGCCGCTGAATTCTCTTACATTTTTCATTTTTCACTTCAACTCTTCCGAATCCGCCGCTGAGCTCCTTCAATCCTGTTTTCCGCCATTGTTGTTTTCTCAGGTTCTTACTTCTTCTTCTCCAATTCCACAAATTCGAGACCAATTTGACTTATGGTTCGTTTATGATTTTCAGAGCCTTCGATTTTTTTTGTTCCAATCCATCTGATTAAGTTCTTCGCTGTCTGTTTTTTCTTACTTTTAGCGAAAAATTTTAGGTATGCTTTGTTTTCTGCGTTCGTTCATGTTTGAATCGATGACGGATGTTCTTCCGAATCGGGACATCGATGACTTGAAGCTAAATCATGTTAAAATACACTGAAATTGAGACAAACATGACGGAATTTAGTTCGGAGTTAGGTTTTTGTTCGAGTTCATTTGTGAATTTGATTTCAATCTTACCAATTGGGAAACAACTTTTCATTTAGGTTTTTTTTTTTTTGAATTCTTGATTCTTTCCAGGCTCCATTTCACTTTCTAAGGCTGTTTGAGATTAGGGGATTTAGTTTGAAAAATAGGGTTAGATTCCAAAATATTTGTAAAAATCGAGTTGCCAAAATTACTTGCAGAATTAGGGAAGTTCTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCTTATTAGAAATTTGAGAGAAGTTGAGAGGATTAGGGAAAATAAATTTGATTTAGGGTGAAGAGGGTAGTTATTAAAAATAAATTCGATTATTAAAAAAATAAAAATAAAAAGGTCAAACGCCATCGGTGTGCCGTCGCATCACTGGTGCAGAATATAATAATTTGCAACCGAATTCAATCTTTCTAAAAGACTGTACAAATTACAACCGTCTCACCCTTTGCATGCAATCTCTGCCATCCAATTTCGCCATTGACTAGCAATAACCTATTCAGTCTCTTAACCTAATTTATTTAGTCTTTTGAAGAGACTGAATTGAATGACGACAAACAATCAACCACAATTTTACAAATAAATTTCAGGTAACTAGATTTTTGCAAATATTTTGGAAATCAACCCTATTTTCACACTAAATCGATTTAGATGAGGGAAAACACTTAAACGACTAAATGCATGTTTAAGAGTCATTTTGAAACATGTATTTCATAATTTAAAATTAGTTTAATGTTTGATTTTATACTTTTAAATGCAATGGTTACGTGCAAATAAAGTTCTACTTTCGCTAGAAAAAGAGAAATCAACCGTATATAGGTGGAGAGAAATCAATAGTATAATAGGTGTGGTTAATTATCTTTGTAGTTAGAATGATTCCAAAATTAAAGTCACGAGAACTTATGCCTAAAATAGACAAGATCATATTATTATAGAGATATGTGGAGGGGCCGTTGTCTTTATCAACAATTTTTTTATGGTTAAATTAGTTTTGAAGAAAAGCATGATTTTGAATGATTTTAACTTTTCTTTCCTTTTTTTTTATCCAGTTTTGCATAAGATAACTCCTAAAATTGAAAAAAATATAGTTCAAACAAAATAATTACAAGTACCGATAATATTAACGAAGAAAAAAGTCTCCCAACCATTTTTACCGGTTCAATTGCAAATTTGACCCCTATAGTTTAGAGAAAATTAAAATTTAGTCTCTTTAATTTCAAAAGTCAGAATTCAGACCATATAGTTTAATAAAACTTCACAAATAAGCCTTATAGAGATTATTTATAAAAATCTTTATCAAACTGTAAGGACTAAATTCTATTATAAATCATAAGAACTAAATTTTAACAATCTCTAAAATATAAAGACCAAATTTACCATTTAACCATTTTTACATTATTCATTGAAATAACATATACCATATTAAAGTTATTTCCCATTTTTTTAGATCCATAATCTTGGGAATTGGTACATTTCAGTTGTTTTCCTTAGTGAAGTGAGAAGAATTACCTGATGGCAGACATGGGAAACTGCTTGCACATGAGCAAAGTTGTAACACTAGGAATCTTGGTTTCTGCAGGAATTGTGTTGCAGTTTTTGGTTAGTACACTATTTCTTTCACCAACACTTAGTCTACTATTTTCATTTTTCTTTTTAGAGTGTGTTTGAATTAACTTTTCAAGTGTTTAATTTTAAAAATAAGTCATTTTGAAAAAAATTAATGTGTTTGAATACTACTCAAAATAGTTTTTGAAGTGTATTTTAACTAGATTTTATCAAAAGAGTTTAGATAAAAGTGAATTTTTTTAAAAACTTTTTTTCTTAATAAATCCAAACATGTCTTTAGATTTTTGTCCATAATTTTGAAGTCTTTTATGACAGGCTTGTGCTTTGTACAATAACTGGTGGCCATTGCTGAGTGGTAAGTTTGGAAAATGATAGTGTTCTAACCATTAGAGTTTAGTTTTTAAACTTTGATACTTGTATTTATTTGGTGTCCAATATATATTTAAGGCCTTGTTAACTATTATGGATTGACTTAATACTAAATAAAAGACATAGGTTTGGTAAAGAGACTCTATAACTGATAAACTTTGTTACGTTTGCATTTTTTTAAAAAATGTTGCTATATATGCTAATACTTTAAATATGATTGCTATATTTGCAATGGTTCCTTTACCAAACCTAGACTTTTATGGTTTATCAGACAACCTAGACCATAAAAGTCTATCAGCAATAGAAGTCTATCACGGATAGATTTTGCTATATTTGCAATTTTTTAAAAATATTGCTATACACTTGGTTATTATCACTGAAATTGCTACTCATTATAATTATCCTTTGATAAAAGATTACCGGGAATAAGTTCAATCCATGGTAACCACTTACCTAAGATTTAATATTCTAGGAGTTTCCTTGACACCCAAATGCAATAACGTCAAATGAGCTGTTCCGTGAGATTAGTCAAGGTGTGCATAAGATGACCCAAACACCCATAGATATAAAAAAATAAATAAAAAAATAAAAAAGAGTACTTAAGACTCCATTTGATGAATACTTGGCATTTTTTCTTACACAAACACGTGAATTTTTAGTCGAAGGTAAAAAAACATAAAAACAAGTTTTTGAAAACTACTTTTTTGAGTTTTCAACATTGAATTTGGTTTTTTAAAACACTTATAAAAAGAGATTACATAACAAAGAAGCTCAAAGTACAAGTAATGTTTCTAAGCTCAATTTTCTAAAACTAATAACTAGAAACCAAATAGTTATCAAATAGATCCTAAACTTTTGATTGTGTGTCTAATAAATTTCAAAACCTTCAATTTTTATGCCTAATAAATCCATGACAAATTTGAAACTTTTAAAAAAAGAACGGATCTATTAGATATGAATTTAAATTTTATATCGAATAGAACTCAAATTTTTTAATTATGTATCTAATAGATAAGTAAGTTTAGAAAATAACAAAGTTTAGAGACTCCATAGTTCCAAAAGTAAAAAATACCAAATAGATCCAAAATTTAAAAATTAATGACTAAATATGTATTTTATCCATTTTCTACCATTTGTAGGTGATATCGTATTTCATTTCATCCCTCCCATACCATTCTTAATTGATGTTGTAGCGACAAACGACTAGAACTTTTTCTATATCTTGGGATGCTTTTGTAGAAAAACAAATCATTTTGGTCCTTAGGATATTGGAAGCAGACAGAAGTAGGTTGCTCTTGTAAAAACAGCTGCTTCCTTTCAGTACTTCTCAAGTCAATACATAACAATCTTCCCCCTGCAAGCAATCAAATTAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAATAAAAACCTTATTAGACATAATATGTTGATGATAATCCCATTTTACTTTCTTGCAGCGGTTATGTATGTTCTTATCCCAATGCCTTTGCTGTTTTTTGCTGGCTCCGATAGTTCTTCGCTATTTTCCGAATCGGGCGACAGGTTTGTTTCGATCATTGTTGGGACAATTAAATTCGATGCGTAGGCTTGATAATAACATGTTTTCTTTTACAGGTGGGTGAATGCGACAAAATTTTTAACGGGAGCTACGGCGGTTGGAAGCGTTGCCATACCTGCAATTTTGAAGCATGCTGATATGATAGGCTGGGGAGCAGTTGCACTGGACTTCTCTTCCCTTTTAGTCTTTGTGGTGGCCATTTTTTGTTATCTATGGATGAGTAATGAAGAAGACTACAATATACTCTAAGATGTGTGTTTCATAAAGTACTCGTGTGGAATTTTCTTGGAGGTCTATAATCGTAAGGGAAATGGAGCAGGCTACTATTAGACAAACAAATCTTTCCAAAAAGATTAGATTCAACACTATTATATGTCCAAGTTTCAATATTGAAACAATTTCAAAAGTTTTCCTTGATTTTATCCATGTCAACAAACAATTCGAAATGCATAGACTTTTTTAGCGTTGAATAGTTATATTTTGAAGCACCATTTTTTGCACTAAA

mRNA sequence

CTCAAAGGGAAACATTTCCTAATCAAAATTAAAGGCTGGGCTGAAGGATAGTTTGAAGTAAACACATCAAATGGAAGGGCGCCGCTGAATTCTCTTACATTTTTCATTTTTCACTTCAACTCTTCCGAATCCGCCGCTGAGCTCCTTCAATCCTGTTTTCCGCCATTGTTGTTTTCTCAGCGAAAAATTTTAGTTGTTTTCCTTAGTGAAGTGAGAAGAATTACCTGATGGCAGACATGGGAAACTGCTTGCACATGAGCAAAGTTGTAACACTAGGAATCTTGGTTTCTGCAGGAATTGTGTTGCAGTTTTTGGCTTGTGCTTTGTACAATAACTGGTGGCCATTGCTGAGTGCGGTTATGTATGTTCTTATCCCAATGCCTTTGCTGTTTTTTGCTGGCTCCGATAGTTCTTCGCTATTTTCCGAATCGGGCGACAGGTGGGTGAATGCGACAAAATTTTTAACGGGAGCTACGGCGGTTGGAAGCGTTGCCATACCTGCAATTTTGAAGCATGCTGATATGATAGGCTGGGGAGCAGTTGCACTGGACTTCTCTTCCCTTTTAGTCTTTGTGGTGGCCATTTTTTGTTATCTATGGATGAGTAATGAAGAAGACTACAATATACTCTAAGATGTGTGTTTCATAAAGTACTCGTGTGGAATTTTCTTGGAGGTCTATAATCGTAAGGGAAATGGAGCAGGCTACTATTAGACAAACAAATCTTTCCAAAAAGATTAGATTCAACACTATTATATGTCCAAGTTTCAATATTGAAACAATTTCAAAAGTTTTCCTTGATTTTATCCATGTCAACAAACAATTCGAAATGCATAGACTTTTTTAGCGTTGAATAGTTATATTTTGAAGCACCATTTTTTGCACTAAA

Coding sequence (CDS)

ATGGCAGACATGGGAAACTGCTTGCACATGAGCAAAGTTGTAACACTAGGAATCTTGGTTTCTGCAGGAATTGTGTTGCAGTTTTTGGCTTGTGCTTTGTACAATAACTGGTGGCCATTGCTGAGTGCGGTTATGTATGTTCTTATCCCAATGCCTTTGCTGTTTTTTGCTGGCTCCGATAGTTCTTCGCTATTTTCCGAATCGGGCGACAGGTGGGTGAATGCGACAAAATTTTTAACGGGAGCTACGGCGGTTGGAAGCGTTGCCATACCTGCAATTTTGAAGCATGCTGATATGATAGGCTGGGGAGCAGTTGCACTGGACTTCTCTTCCCTTTTAGTCTTTGTGGTGGCCATTTTTTGTTATCTATGGATGAGTAATGAAGAAGACTACAATATACTCTAA

Protein sequence

MADMGNCLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSDSSSLFSESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIFCYLWMSNEEDYNIL

Homology

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BLAST of Lsi05G000510 vs. ExPASy Swiss-Prot
Match: Q9AST6 (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana OX=3702 GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-43
Identity = 85/124 (68.55%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 7   CLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSDSSSLFS 66
           CL M K+  L ILVS GIVLQ LACAL+NNWWP+LS +MYVL+PMPLLFF GSDS+SLF+
Sbjct: 11  CLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFN 70

Query: 67  ESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIFCYLWMS 126
           ES + W+NA KFLTGA+AVGSVAIP+ILKHA +IGWGA+ALD SS +VF+VAI  Y+ + 
Sbjct: 71  ESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYICIG 130

Query: 127 NEED 131
           +  D
Sbjct: 131 DASD 134

[Close]

BLAST of Lsi05G000510 vs. ExPASy Swiss-Prot
Match: Q9UUH1 (Vacuolar protein sorting-associated protein 55 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vps55 PE=3 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 5.9e-09
Identity = 34/125 (27.20%), Postives = 68/125 (54.40%), Query Frame = 0


Query: 10  MSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSDSSSLFSESG 69
           + K++ L  +++ G +L  L+CAL+ NW+PLL  + ++L P+P L      +S  F +  
Sbjct: 4   LRKIIGLSSVLAVGFMLVILSCALFKNWYPLLIVIPFILAPLPNLLTKKYSTSHDFLQEE 63

Query: 70  DR-WVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDF--SSLLVFVVAIFCYLWMS 129
           DR  ++  +F  GAT     A+P +  +  +IG  A  +     S++  V+ ++   ++ 
Sbjct: 64  DRNLLDFGRFTFGATICTGFALPIVFVNVGLIGTAAATMSCVGGSIIFLVITLYSQAFVQ 123

Query: 130 NEEDY 132
           +EE++
Sbjct: 124 HEEEF 128

[Close]

BLAST of Lsi05G000510 vs. ExPASy Swiss-Prot
Match: P47111 (Vacuolar protein sorting-associated protein 55 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS55 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-08
Identity = 34/126 (26.98%), Postives = 70/126 (55.56%), Query Frame = 0


Query: 10  MSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMP-LLFFAGS--DSSSLFS 69
           ++K+++L   ++ G +L  L+CAL++N++PL   ++++L P+P  +F AG+   +S   S
Sbjct: 9   LTKIISLSGFLALGFLLVILSCALFHNYYPLFDILIFLLAPIPNTIFNAGNKYHTSDFMS 68

Query: 70  ESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIFCYLWMS 129
           +S +   +   FLTG      +A+P +  H  +IG  +  +     L+   +I  + W  
Sbjct: 69  DSSNTGQDLAHFLTGMLVTSGIALPVVFYHCQLIGHLSCIMCMIGGLIIYSSIVIFKWFF 128

Query: 130 NEEDYN 133
            ++D+N
Sbjct: 129 -KKDFN 133

[Close]

BLAST of Lsi05G000510 vs. ExPASy TrEMBL
Match: A0A6J1DSZ0 (vacuolar protein sorting-associated protein 55 homolog OS=Momordica charantia OX=3673 GN=LOC111024101 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.1e-55
Identity = 108/134 (80.60%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MADMGNCLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSD 60
           MAD+G C HMSK+VTLG+LVS GIVLQFLAC LY NWWPLLS +MY+L+PMPLLFFAGSD
Sbjct: 1   MADLGYCWHMSKLVTLGVLVSGGIVLQFLACVLYXNWWPLLSVIMYILLPMPLLFFAGSD 60

Query: 61  SSSLFSESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIF 120
           +SSL SESGD WVNATKFLTGA+ VGS+AIP ILKHA++IGWGA+ALD SSLLVFVVAI 
Sbjct: 61  TSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIIGWGALALDLSSLLVFVVAIL 120

Query: 121 CYLWMSNEEDYNIL 135
           CYLWMSNE+DYN L
Sbjct: 121 CYLWMSNEDDYNTL 134

[Close]

BLAST of Lsi05G000510 vs. ExPASy TrEMBL
Match: A0A5N6R6S4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012387 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.5e-47
Identity = 92/129 (71.32%), Postives = 113/129 (87.60%), Query Frame = 0


Query: 6   NCLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSDSSSLF 65
           +CLH  K+  L ILVS GIVLQ LACALYNNWWP+L+ +MYVL+PMPLLFFAGSDSSSLF
Sbjct: 11  SCLHTGKLALLAILVSGGIVLQILACALYNNWWPMLTVLMYVLLPMPLLFFAGSDSSSLF 70

Query: 66  SESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIFCYLWM 125
           SES + WVNATKFLTGA+ +GS+AIPAILKHA +IGWGA+A++FSS  +FV+AI CY+ M
Sbjct: 71  SESDNNWVNATKFLTGASTIGSLAIPAILKHAGVIGWGALAMEFSSFFIFVLAIMCYIRM 130

Query: 126 SNEEDYNIL 135
           ++E+DYN+L
Sbjct: 131 NSEDDYNVL 139

[Close]

BLAST of Lsi05G000510 vs. ExPASy TrEMBL
Match: A0A2C9U468 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G019200 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.1e-45
Identity = 92/128 (71.88%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 7   CLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSDSSSLFS 66
           CL   K+  L ILVS GI+LQ LACALYNNWWP+LS +MYVL+PMPLLFFAGSDSSSLFS
Sbjct: 11  CLQSGKLAFLAILVSGGIILQILACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLFS 70

Query: 67  ESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIFCYLWMS 126
           ES + WVNATKFLTGA+AVGS+AIPAILKHA +IGWGA+A++ SS  VFV+AI CY+ M+
Sbjct: 71  ESNNSWVNATKFLTGASAVGSIAIPAILKHAGVIGWGALAMELSSFFVFVIAIMCYISMN 130

Query: 127 NEEDYNIL 135
           +E+ Y+IL
Sbjct: 131 DEDGYSIL 138

[Close]

BLAST of Lsi05G000510 vs. ExPASy TrEMBL
Match: A0A0A0L5B3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G016420 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.4e-45
Identity = 90/132 (68.18%), Postives = 111/132 (84.09%), Query Frame = 0


Query: 2   ADMGNCLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSDS 61
           A +  CL M KV  L ILVS GIV+Q LACALYNNWWP+LS +MYVL+PMPLLFFAGSDS
Sbjct: 6   ASLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFAGSDS 65

Query: 62  SSLFSESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIFC 121
           SSL+++S D W+NATKFLTGA+ VGS+AIP ILKHA +IGWGA+A+D SS +VFVVAI C
Sbjct: 66  SSLYTDSNDSWINATKFLTGASTVGSIAIPVILKHAGIIGWGAMAMDLSSFVVFVVAILC 125

Query: 122 YLWMSNEEDYNI 134
           ++ MS ++DY++
Sbjct: 126 FMGMSEDDDYSM 137

[Close]

BLAST of Lsi05G000510 vs. ExPASy TrEMBL
Match: A0A7J7CJN6 (Vacuolar protein sorting 55 (VPS55) family protein isoform 1 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00715 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.4e-45
Identity = 90/129 (69.77%), Postives = 108/129 (83.72%), Query Frame = 0


Query: 6   NCLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSDSSSLF 65
           +CLH  K+  L ILVS GIVLQ LACALYNNWWP+L+ +MYVL+PMPLLFFAGSD S+L 
Sbjct: 10  SCLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTVIMYVLLPMPLLFFAGSDRSALL 69

Query: 66  SESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIFCYLWM 125
           SES D WVNATKFLTGA+AVGS+AIP ILKHA +IGWGA+A++ SS  VFV+AI CY+ M
Sbjct: 70  SESNDSWVNATKFLTGASAVGSIAIPTILKHAGVIGWGALAMELSSFFVFVIAIMCYISM 129

Query: 126 SNEEDYNIL 135
             E+DY++L
Sbjct: 130 GEEDDYSML 138

[Close]

BLAST of Lsi05G000510 vs. NCBI nr
Match: XP_022157395.1 (vacuolar protein sorting-associated protein 55 homolog [Momordica charantia] >XP_022157399.1 vacuolar protein sorting-associated protein 55 homolog [Momordica charantia])

HSP 1 Score: 225.7 bits (574), Expect = 2.4e-55
Identity = 108/134 (80.60%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MADMGNCLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSD 60
           MAD+G C HMSK+VTLG+LVS GIVLQFLAC LY NWWPLLS +MY+L+PMPLLFFAGSD
Sbjct: 1   MADLGYCWHMSKLVTLGVLVSGGIVLQFLACVLYXNWWPLLSVIMYILLPMPLLFFAGSD 60

Query: 61  SSSLFSESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIF 120
           +SSL SESGD WVNATKFLTGA+ VGS+AIP ILKHA++IGWGA+ALD SSLLVFVVAI 
Sbjct: 61  TSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHANIIGWGALALDLSSLLVFVVAIL 120

Query: 121 CYLWMSNEEDYNIL 135
           CYLWMSNE+DYN L
Sbjct: 121 CYLWMSNEDDYNTL 134

[Close]

BLAST of Lsi05G000510 vs. NCBI nr
Match: KAE8055554.1 (hypothetical protein FH972_012387 [Carpinus fangiana])

HSP 1 Score: 198.0 bits (502), Expect = 5.3e-47
Identity = 92/129 (71.32%), Postives = 113/129 (87.60%), Query Frame = 0


Query: 6   NCLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSDSSSLF 65
           +CLH  K+  L ILVS GIVLQ LACALYNNWWP+L+ +MYVL+PMPLLFFAGSDSSSLF
Sbjct: 11  SCLHTGKLALLAILVSGGIVLQILACALYNNWWPMLTVLMYVLLPMPLLFFAGSDSSSLF 70

Query: 66  SESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIFCYLWM 125
           SES + WVNATKFLTGA+ +GS+AIPAILKHA +IGWGA+A++FSS  +FV+AI CY+ M
Sbjct: 71  SESDNNWVNATKFLTGASTIGSLAIPAILKHAGVIGWGALAMEFSSFFIFVLAIMCYIRM 130

Query: 126 SNEEDYNIL 135
           ++E+DYN+L
Sbjct: 131 NSEDDYNVL 139

[Close]

BLAST of Lsi05G000510 vs. NCBI nr
Match: XP_021599879.1 (vacuolar protein sorting-associated protein 55 homolog [Manihot esculenta] >OAY24482.1 hypothetical protein MANES_17G019200v8 [Manihot esculenta] >OAY24520.2 hypothetical protein MANES_17G019200v8 [Manihot esculenta])

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-45
Identity = 92/128 (71.88%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 7   CLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSDSSSLFS 66
           CL   K+  L ILVS GI+LQ LACALYNNWWP+LS +MYVL+PMPLLFFAGSDSSSLFS
Sbjct: 11  CLQSGKLAFLAILVSGGIILQILACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLFS 70

Query: 67  ESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIFCYLWMS 126
           ES + WVNATKFLTGA+AVGS+AIPAILKHA +IGWGA+A++ SS  VFV+AI CY+ M+
Sbjct: 71  ESNNSWVNATKFLTGASAVGSIAIPAILKHAGVIGWGALAMELSSFFVFVIAIMCYISMN 130

Query: 127 NEEDYNIL 135
           +E+ Y+IL
Sbjct: 131 DEDGYSIL 138

[Close]

BLAST of Lsi05G000510 vs. NCBI nr
Match: XP_004150170.1 (vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >XP_031739448.1 vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >XP_031739449.1 vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >KGN55797.1 hypothetical protein Csa_009853 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 2.9e-45
Identity = 90/132 (68.18%), Postives = 111/132 (84.09%), Query Frame = 0


Query: 2   ADMGNCLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSDS 61
           A +  CL M KV  L ILVS GIV+Q LACALYNNWWP+LS +MYVL+PMPLLFFAGSDS
Sbjct: 6   ASLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFAGSDS 65

Query: 62  SSLFSESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIFC 121
           SSL+++S D W+NATKFLTGA+ VGS+AIP ILKHA +IGWGA+A+D SS +VFVVAI C
Sbjct: 66  SSLYTDSNDSWINATKFLTGASTVGSIAIPVILKHAGIIGWGAMAMDLSSFVVFVVAILC 125

Query: 122 YLWMSNEEDYNI 134
           ++ MS ++DY++
Sbjct: 126 FMGMSEDDDYSM 137

[Close]

BLAST of Lsi05G000510 vs. NCBI nr
Match: XP_038679642.1 (vacuolar protein sorting-associated protein 55 homolog [Tripterygium wilfordii] >XP_038679643.1 vacuolar protein sorting-associated protein 55 homolog [Tripterygium wilfordii] >XP_038679644.1 vacuolar protein sorting-associated protein 55 homolog [Tripterygium wilfordii] >KAF5734268.1 Vacuolar protein sorting 55 (VPS55) family protein isoform 1 [Tripterygium wilfordii])

HSP 1 Score: 191.4 bits (485), Expect = 4.9e-45
Identity = 90/129 (69.77%), Postives = 108/129 (83.72%), Query Frame = 0


Query: 6   NCLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSDSSSLF 65
           +CLH  K+  L ILVS GIVLQ LACALYNNWWP+L+ +MYVL+PMPLLFFAGSD S+L 
Sbjct: 10  SCLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTVIMYVLLPMPLLFFAGSDRSALL 69

Query: 66  SESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIFCYLWM 125
           SES D WVNATKFLTGA+AVGS+AIP ILKHA +IGWGA+A++ SS  VFV+AI CY+ M
Sbjct: 70  SESNDSWVNATKFLTGASAVGSIAIPTILKHAGVIGWGALAMELSSFFVFVIAIMCYISM 129

Query: 126 SNEEDYNIL 135
             E+DY++L
Sbjct: 130 GEEDDYSML 138

[Close]

BLAST of Lsi05G000510 vs. TAIR 10
Match: AT1G32410.1 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-44
Identity = 85/124 (68.55%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 7   CLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSDSSSLFS 66
           CL M K+  L ILVS GIVLQ LACAL+NNWWP+LS +MYVL+PMPLLFF GSDS+SLF+
Sbjct: 11  CLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFN 70

Query: 67  ESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIFCYLWMS 126
           ES + W+NA KFLTGA+AVGSVAIP+ILKHA +IGWGA+ALD SS +VF+VAI  Y+ + 
Sbjct: 71  ESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYICIG 130

Query: 127 NEED 131
           +  D
Sbjct: 131 DASD 134

[Close]

BLAST of Lsi05G000510 vs. TAIR 10
Match: AT1G32410.2 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-44
Identity = 85/124 (68.55%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 7   CLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSDSSSLFS 66
           CL M K+  L ILVS GIVLQ LACAL+NNWWP+LS +MYVL+PMPLLFF GSDS+SLF+
Sbjct: 11  CLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFN 70

Query: 67  ESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIFCYLWMS 126
           ES + W+NA KFLTGA+AVGSVAIP+ILKHA +IGWGA+ALD SS +VF+VAI  Y+ + 
Sbjct: 71  ESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYICIG 130

Query: 127 NEED 131
           +  D
Sbjct: 131 DASD 134

[Close]

BLAST of Lsi05G000510 vs. TAIR 10
Match: AT1G32410.3 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-44
Identity = 85/124 (68.55%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 7   CLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSDSSSLFS 66
           CL M K+  L ILVS GIVLQ LACAL+NNWWP+LS +MYVL+PMPLLFF GSDS+SLF+
Sbjct: 11  CLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFN 70

Query: 67  ESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIFCYLWMS 126
           ES + W+NA KFLTGA+AVGSVAIP+ILKHA +IGWGA+ALD SS +VF+VAI  Y+ + 
Sbjct: 71  ESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYICIG 130

Query: 127 NEED 131
           +  D
Sbjct: 131 DASD 134

[Close]

BLAST of Lsi05G000510 vs. TAIR 10
Match: AT1G32410.4 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-44
Identity = 85/124 (68.55%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 7   CLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSDSSSLFS 66
           CL M K+  L ILVS GIVLQ LACAL+NNWWP+LS +MYVL+PMPLLFF GSDS+SLF+
Sbjct: 11  CLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFN 70

Query: 67  ESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIFCYLWMS 126
           ES + W+NA KFLTGA+AVGSVAIP+ILKHA +IGWGA+ALD SS +VF+VAI  Y+ + 
Sbjct: 71  ESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYICIG 130

Query: 127 NEED 131
           +  D
Sbjct: 131 DASD 134

[Close]

BLAST of Lsi05G000510 vs. TAIR 10
Match: AT1G32410.5 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-44
Identity = 85/124 (68.55%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 7   CLHMSKVVTLGILVSAGIVLQFLACALYNNWWPLLSAVMYVLIPMPLLFFAGSDSSSLFS 66
           CL M K+  L ILVS GIVLQ LACAL+NNWWP+LS +MYVL+PMPLLFF GSDS+SLF+
Sbjct: 11  CLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFN 70

Query: 67  ESGDRWVNATKFLTGATAVGSVAIPAILKHADMIGWGAVALDFSSLLVFVVAIFCYLWMS 126
           ES + W+NA KFLTGA+AVGSVAIP+ILKHA +IGWGA+ALD SS +VF+VAI  Y+ + 
Sbjct: 71  ESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYICIG 130

Query: 127 NEED 131
           +  D
Sbjct: 131 DASD 134

The following BLAST results are available for this feature:

BLAST of Lsi05G000510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AST6	2.2e-43	68.55	Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana O...	[more]
Q9UUH1	5.9e-09	27.20	Vacuolar protein sorting-associated protein 55 OS=Schizosaccharomyces pombe (str...	[more]
P47111	2.2e-08	26.98	Vacuolar protein sorting-associated protein 55 OS=Saccharomyces cerevisiae (stra...	[more]

BLAST of Lsi05G000510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSZ0	1.1e-55	80.60	vacuolar protein sorting-associated protein 55 homolog OS=Momordica charantia OX...	[more]
A0A5N6R6S4	2.5e-47	71.32	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012387 PE=3 SV=1	[more]
A0A2C9U468	1.1e-45	71.88	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G019200 PE=3 SV=...	[more]
A0A0A0L5B3	1.4e-45	68.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G016420 PE=3 SV=1	[more]
A0A7J7CJN6	2.4e-45	69.77	Vacuolar protein sorting 55 (VPS55) family protein isoform 1 OS=Tripterygium wil...	[more]

BLAST of Lsi05G000510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157395.1	2.4e-55	80.60	vacuolar protein sorting-associated protein 55 homolog [Momordica charantia] >XP...	[more]
KAE8055554.1	5.3e-47	71.32	hypothetical protein FH972_012387 [Carpinus fangiana]	[more]
XP_021599879.1	2.2e-45	71.88	vacuolar protein sorting-associated protein 55 homolog [Manihot esculenta] >OAY2...	[more]
XP_004150170.1	2.9e-45	68.18	vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >XP_031...	[more]
XP_038679642.1	4.9e-45	69.77	vacuolar protein sorting-associated protein 55 homolog [Tripterygium wilfordii] ...	[more]

BLAST of Lsi05G000510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32410.1	1.5e-44	68.55	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.2	1.5e-44	68.55	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.3	1.5e-44	68.55	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.4	1.5e-44	68.55	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.5	1.5e-44	68.55	Vacuolar protein sorting 55 (VPS55) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007262	Vps55/LEPROT	PFAM	PF04133	Vps55	coord: 13..130 e-value: 2.1E-32 score: 111.5
IPR007262	Vps55/LEPROT	PANTHER	PTHR12050	LEPTIN RECEPTOR-RELATED	coord: 4..131
None	No IPR available	PANTHER	PTHR12050:SF1	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 55 HOMOLOG	coord: 4..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G000510.1	Lsi05G000510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0032511	late endosome to vacuole transport via multivesicular body sorting pathway
biological_process	GO:0006048	UDP-N-acetylglucosamine biosynthetic process
cellular_component	GO:0005768	endosome
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004610	phosphoacetylglucosamine mutase activity