Lsi05G000440 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G000440
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	cytochrome c oxidase subunit 6b-3-like
Location	chr05: 953594 .. 957198 (-)
RNA-Seq Expression	Lsi05G000440
Synteny	Lsi05G000440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGATCCTCACGACAAGATGAGATCCAGAGACGTAAGCAAGGTGGCACGTGGCGAGCAAGCCCCAAGGCCAGCTCACGAATACGGCACCGTTTCGAAGCCTCCGCCGCCTTCTTCCACCTCCGTTCCCTCCGCTCAGACCAACCTCGACGGTAACGACGATCGCCGCCGCGGAGGCGAAGACAAAGACAATAAGGTCTGAGGTCTCTTCTAAAAAAAATAGAATGTTTATTTGCATACGTTGAGAGTAAATTTAATGTTGAAAAAGAATTTGGTATTGTTTTTATTTGCTCTCTTACATTTTTTTAAGTAAATTTTAAAGTTTGATTTTAATTTATGTTTCAAGATCTTATAATTTTACTCCTTAAATTTTTTAAATTTGGTCTATAACTTTCAACATTTACATTTCAACTTCACTAAATATTCGCATGCTTATTAATTAATTGAAAATAATTATAATGGATTAGACTTCACTATTTCTTCATTAAATTAATTTTAAAATCTCACTTCCTAATTATTTTAAATTAAATAATAGGCGTGTATTTAATTAAAAAAAATCAAATTTAAAAGCAAAATATTTTTAACTTAATTAAAGATTGGATTGAAAGAAAACTTAAATTTCGATAACATTTTAAAACTAAATGGTATTAAAAAATGTAGAACAAAAGTGTTACCTTTTGAAACCGATTAGGTCAATAAAACAAAATTCAAAACCTAAAGTTAAAAAAAAAAATTATTTTCCCTCATTAAATTACTAATAAACAATAGTGGTTATTAACATATTAATGAGAGGATAAAATAATATTATATTTGTTCAATATCTAAATTTTGTGTTCTAAACTTAATATTTTAATAGTTAAATTACAAATTCAATCTTAAAGAAAACCTAGAATTTAGTACTTATTAACTTGTTAAAAAAGTTGAAATTCAAACTCGTTTTTGTCCCTACATGGTTAGTAACCATTATAGGTGGCCTACTGATAGGGTCGGTATGATCTTAATAAAGACCTCAAGAGGTCGTAGATTATTTAATATCCTACGAATTTTCTTGACACTCAAAATATTCACCTGACATTAGTCTAAGTGTCTACCTATTCAACACAAAAGATAGGGGTGATCTTCATAATTGTAGCAACCAAATCTATAACTTAACCCATTTAAATAATCATGATCAAGATGGGTATAGGTTAGTGTGAATATAATATTTTTAATCAATATTATAATATTGATATTTTTATATTATTAATATTTTTAATAGTTTGGGATTTGAACTTTCGATTTGAAGAGTAATTTTTAATATTATAATATTGGTAGGTGGTAGTGGATGAGGGACGATTAGAGACAGCGCCAACTGACCTTCGTTTTCCTTTCACTAATCAAACACGTCATTGCTATGCACGCTATTTGGAATACCATAGGTAAAATGTCTCACACACATATACACACACGTTTGGTCAATAAAATGTTTTTAATACATCGATTTTCGTCCATATAAGTATAACTCAATTAGCATAAGCTTATATTATAAATACTTGTATTATTAATTTTGAGGCTTGAAATTCTATTGATCTTACATCTTTTGTTTCTTAAATATGTAAGGTTGGTTATGGTAAAATCTTTGTAGGAAGTGACAACAATTTGCTTCATTTCCAACCTTCCGATGATATGTAAAGAGAATAATTTTAGAAGAGTTTTTAAATTAACTCTATTTTTCTTATTTCTTTTTTAAATTTGTATGTCATTCGGGCTCGTGTTAGGTGTGTGCAAAAGAAGGGGGAGCGTGCGCCTGAATGCAAAAAGTTCGCCAAGTATTATCGATCTCTATATCCAAGTGAATGGGTAAGAGAAATTTTTAGTACTACGATAATATAATATATACTGCTTTCACAATTTTACTTTAATTAGTATTTATTATGTTATTAGGACATTTCGTGGCAGCTCTTATTTCTATACAATTTATTAAGGTTTCGTTTGATAATTATGTGGTTTGTTGTCTTTTTATTTTTGAAAAACAAGATGAAAATTGAGCTTGTTTTGTTATCACTTCTTTATTCATGGTTTTCATCTTTTCTTACTAAACACAATTTGGTTTTACGTCTTTTTGTTTTGAAAATTGTCTTTGTTTTCTTACTACTTTTTTATTCATGCTTTTTATCTTTCTTACTACATACGACCAAATGACCAAATTTTAAACTACATACGATCAAGACCATCTATATGTATGAGAGTAGTGTTTATAAATTTAATTTTTAAAAATTAAATAGTATGATTTTTTTTTTAAGTTTTCAAAACCCTCCATGGAAGTAGTATTTATACTTGGTTAAGTGAATAATCTACTTTATTTCTTACTAACCTGGTAGCATCAACAGTAACAAAGTTTTTTAGTACATTAATTAATAAAAAAATGTTTAATTTTGACCATCCATGTTATATTAAGTTTGGAAATTGAGGACATGTATGAGGAGTGGTCTTATGATAATGGTTGAATTCTTAAGTGATTTATGGATAGTGGTTGAATTCTTAAGTTATTAAAATACCATTTTCATTGTTTAAAGAAAAAACCATTTTTTATTTGAATGATTAAGACATTAATTTTAATCTTTTAAAATTGGTTGTTCTTAATTATTCCTATTAAAATTTTATTTTTAAAAAAATAATTTTAGTCGTATTAAAATTTTATTTTTTAAAAAAGTCGAGGATCATGAGGGGTAAAATTTGAAATTTGAGATTAGTGATTTTGAAATGGTTAAACACTTTATAATAAAATGTATTTATTCATTTGAATTTAGTTTTATCTTTTAGTTTTTACAATTTTATAAGTGATTTTTATGTTATCAAAATTGATTTTGATTGATTAAAAACATGTATTTATGGTGAAAACAATTTTATATCTATTCTAAAATTATATTCAAAATGTGTCTTTCAACTTTGTTGTTTCTAATACTTTTGAGGAACTACAATGAATGAATGAGACGTAGAAGTTACACAAGAATCTGATCAGACATCAGAGGTATATATTCTTCTTCGTGCATGTTGGTCCGGTTCCTCGTGCATGTTGGTCTTTTTCTTAAGAAAAGAAATATATATGTATATATATGATTAGTGAGTTTCGTGTATAATAGAGAAATCGAGATAGGTTGAAAGTAAAGAATTTCTGAGTTGGTTCCGTAGTAGAATCCTAATGGTCTTAACTTTTTAAAATGTTTATTTTTAATTTAGTGTATAATTGTTTTTAAAAAAAAATCATTTTTGTCTCTCTCTCAACAAGGTTAGCCTAAGGAGTTGTAGATAGTTTCAATTTTATATCTTATATCTTATTAACTCAACTGTCCATATAATTTTACTCCAAAATGTCTCCTAAAAATGTTATATATTGAGATCTAAAATTTCGTCTTGGATTTGAAGAAAACTTATGAAAATTTTGAGATTTAAAGATAGAATTTTTTTTTAAAAAAAATTATATATATATATAGAGAGAGAGTTTGCTATATAATAAGGCCTCTGTGGATATATATTAATGTTTAGTGAAGGCCATCTTTTTACTTCGTGCAGATTGAGAAGTGGAACGAGCAAAGGAAACTCGGCGTCTTTCCTGGTCCGATATAA

mRNA sequence

GTAGATCCTCACGACAAGATGAGATCCAGAGACGTAAGCAAGGTGGCACGTGGCGAGCAAGCCCCAAGGCCAGCTCACGAATACGGCACCGTTTCGAAGCCTCCGCCGCCTTCTTCCACCTCCGTTCCCTCCGCTCAGACCAACCTCGACGGTAACGACGATCGCCGCCGCGGAGGCGAAGACAAAGACAATAAGTTAAATTACAAATTCAATCTTAAAGAAAACCTAGAATTTATAACCATTATAGGTGGCCTACTGATAGGGTCGGTGGTAGTGGATGAGGGACGATTAGAGACAGCGCCAACTGACCTTCGTTTTCCTTTCACTAATCAAACACGTCATTGCTATGCACGCTATTTGGAATACCATAGGCTTGAAATTCTATTGATCTTACATCTTTTGTTTCTTAAATATGTTGGTTATGGTAAAATCTTTGTAGGAAGTGACAACAATTTGCTTCATTTCCAACCTTCCGATGATATGTGTGTGCAAAAGAAGGGGGAGCGTGCGCCTGAATGCAAAAAGTTCGCCAAGTATTATCGATCTCTATATCCAAGTGAATGGATTGAGAAGTGGAACGAGCAAAGGAAACTCGGCGTCTTTCCTGGTCCGATATAA

Coding sequence (CDS)

GTAGATCCTCACGACAAGATGAGATCCAGAGACGTAAGCAAGGTGGCACGTGGCGAGCAAGCCCCAAGGCCAGCTCACGAATACGGCACCGTTTCGAAGCCTCCGCCGCCTTCTTCCACCTCCGTTCCCTCCGCTCAGACCAACCTCGACGGTAACGACGATCGCCGCCGCGGAGGCGAAGACAAAGACAATAAGTTAAATTACAAATTCAATCTTAAAGAAAACCTAGAATTTATAACCATTATAGGTGGCCTACTGATAGGGTCGGTGGTAGTGGATGAGGGACGATTAGAGACAGCGCCAACTGACCTTCGTTTTCCTTTCACTAATCAAACACGTCATTGCTATGCACGCTATTTGGAATACCATAGGCTTGAAATTCTATTGATCTTACATCTTTTGTTTCTTAAATATGTTGGTTATGGTAAAATCTTTGTAGGAAGTGACAACAATTTGCTTCATTTCCAACCTTCCGATGATATGTGTGTGCAAAAGAAGGGGGAGCGTGCGCCTGAATGCAAAAAGTTCGCCAAGTATTATCGATCTCTATATCCAAGTGAATGGATTGAGAAGTGGAACGAGCAAAGGAAACTCGGCGTCTTTCCTGGTCCGATATAA

Protein sequence

VDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKLNYKFNLKENLEFITIIGGLLIGSVVVDEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLEILLILHLLFLKYVGYGKIFVGSDNNLLHFQPSDDMCVQKKGERAPECKKFAKYYRSLYPSEWIEKWNEQRKLGVFPGPI

Homology

[Close]

BLAST of Lsi05G000440 vs. ExPASy Swiss-Prot
Match: Q9S7L9 (Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.5e-24
Identity = 54/113 (47.79%), Postives = 64/113 (56.64%), Query Frame = 0


Query: 93  DEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLEILLILHLLFLKYVGYGKIFVGSDNNL 152
           DE +LETAP D RFP TNQTRHC+ RY+EYHR                            
Sbjct: 115 DEIKLETAPADFRFPTTNQTRHCFTRYVEYHR---------------------------- 174

Query: 153 LHFQPSDDMCVQKKGERAPECKKFAKYYRSLYPSEWIEKWNEQRKLGVFPGPI 206
                    CV  KG+ APEC KFAK+YRSL PSEW+++WNEQR+ G FPGP+
Sbjct: 175 ---------CVAAKGDDAPECDKFAKFYRSLCPSEWVDRWNEQRENGTFPGPL 190

[Close]

BLAST of Lsi05G000440 vs. ExPASy Swiss-Prot
Match: Q9SUD3 (Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=2 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 5.5e-22
Identity = 50/113 (44.25%), Postives = 61/113 (53.98%), Query Frame = 0


Query: 93  DEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLEILLILHLLFLKYVGYGKIFVGSDNNL 152
           DE  L+TAP D RFP TNQTRHC+ RY+E+HR                            
Sbjct: 3   DEIELKTAPADFRFPTTNQTRHCFTRYIEFHR---------------------------- 62

Query: 153 LHFQPSDDMCVQKKGERAPECKKFAKYYRSLYPSEWIEKWNEQRKLGVFPGPI 206
                    C   KGE A EC++FAKYYR+L P EW++KWNEQR+ G FPGP+
Sbjct: 63  ---------CTTAKGEDANECERFAKYYRALCPGEWVDKWNEQRETGTFPGPL 78

[Close]

BLAST of Lsi05G000440 vs. ExPASy Swiss-Prot
Match: Q945L0 (Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-21
Identity = 48/113 (42.48%), Postives = 61/113 (53.98%), Query Frame = 0


Query: 93  DEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLEILLILHLLFLKYVGYGKIFVGSDNNL 152
           DE  L+TAP D RFP TNQTRHC+ RY+E+HR                            
Sbjct: 3   DEIELKTAPADFRFPTTNQTRHCFTRYIEFHR---------------------------- 62

Query: 153 LHFQPSDDMCVQKKGERAPECKKFAKYYRSLYPSEWIEKWNEQRKLGVFPGPI 206
                    C   KGE + +C++FAKYYR+L P EW++KWNEQR+ G FPGP+
Sbjct: 63  ---------CTTAKGEESNDCERFAKYYRALCPGEWVDKWNEQRESGTFPGPL 78

[Close]

BLAST of Lsi05G000440 vs. ExPASy Swiss-Prot
Match: Q9LPJ2 (Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana OX=3702 GN=At1g32710 PE=3 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-16
Identity = 59/191 (30.89%), Postives = 75/191 (39.27%), Query Frame = 0


Query: 1   VDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGE 60
           +DPHDKMRSRD+SKVARG+QAPRPAH  GTVS PP   +T                    
Sbjct: 6   MDPHDKMRSRDISKVARGQQAPRPAHTPGTVSPPPENEAT-------------------- 65

Query: 61  DKDNKLNYKFNLKENLEFITIIGGLLIGSVVVDEGRLETAPTDLRFPFTNQTRHCYARYL 120
                    F  K                   D GR   A  + RFP TN+TRHC+ R++
Sbjct: 66  ---------FRAKRG-----------------DSGRETDAAVEERFPVTNETRHCFNRFM 113

Query: 121 EYHRLEILLILHLLFLKYVGYGKIFVGSDNNLLHFQPSDDMCVQKKGERAPECKKFAKYY 180
           +YH+                                     C++K G  A +C     Y 
Sbjct: 126 QYHK-------------------------------------CIEKNGRDANDCNNLRDYV 113

Query: 181 RSLYPSEWIEK 192
           RS+ P E + K
Sbjct: 186 RSICPEELVSK 113

[Close]

BLAST of Lsi05G000440 vs. ExPASy Swiss-Prot
Match: O94581 (Cytochrome c oxidase subunit 12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cox12 PE=3 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 6.7e-12
Identity = 37/107 (34.58%), Postives = 49/107 (45.79%), Query Frame = 0


Query: 99  TAPTDLRFPFTNQTRHCYARYLEYHRLEILLILHLLFLKYVGYGKIFVGSDNNLLHFQPS 158
           T   D RFP TNQT+HC+  Y++Y R                                  
Sbjct: 17  TVGFDARFPNTNQTKHCFQSYIDYFR---------------------------------- 76

Query: 159 DDMCVQKKGERAPECKKFAKYYRSLYPSEWIEKWNEQRKLGVFPGPI 206
              C++ KGE    CK+F   Y+SL P EW+E+W+EQR+ G FP PI
Sbjct: 77  ---CIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFPAPI 86

[Close]

BLAST of Lsi05G000440 vs. ExPASy TrEMBL
Match: A0A0A0LEH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910720 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 9.9e-59
Identity = 127/206 (61.65%), Postives = 138/206 (66.99%), Query Frame = 0


Query: 1   VDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGN-DDRRRGG 60
           +DPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSS+SVPSAQTNLDGN DDRRRG 
Sbjct: 6   IDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGS 65

Query: 61  EDKDNKLNYKFNLKENLEFITIIGGLLIGSVVVDEGRLETAPTDLRFPFTNQTRHCYARY 120
           ED+DNK                        VV+DEG + TAP+D+RFPFTNQTRHCYARY
Sbjct: 66  EDRDNK------------------------VVMDEG-VGTAPSDIRFPFTNQTRHCYARY 125

Query: 121 LEYHRLEILLILHLLFLKYVGYGKIFVGSDNNLLHFQPSDDMCVQKKGERAPECKKFAKY 180
           LEYHR                                     CVQKKGE APECKKFAKY
Sbjct: 126 LEYHR-------------------------------------CVQKKGEHAPECKKFAKY 149

Query: 181 YRSLYPSEWIEKWNEQRKLGVFPGPI 206
           YRSL P EW+EKWNEQR+LGVFPGP+
Sbjct: 186 YRSLCPGEWVEKWNEQRELGVFPGPM 149

[Close]

BLAST of Lsi05G000440 vs. ExPASy TrEMBL
Match: A0A5D3E4S8 (Putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004020 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 7.8e-56
Identity = 126/205 (61.46%), Postives = 134/205 (65.37%), Query Frame = 0


Query: 1   VDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGE 60
           +DPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTN   +D RR G E
Sbjct: 6   IDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTN---DDHRRSGSE 65

Query: 61  DKDNKLNYKFNLKENLEFITIIGGLLIGSVVVDEGRLETAPTDLRFPFTNQTRHCYARYL 120
           DKD         K+N              VV+DEG +ETAP+DLRFPFTNQTRHCYARYL
Sbjct: 66  DKD---------KDN-------------KVVMDEG-VETAPSDLRFPFTNQTRHCYARYL 125

Query: 121 EYHRLEILLILHLLFLKYVGYGKIFVGSDNNLLHFQPSDDMCVQKKGERAPECKKFAKYY 180
           EYHR                                     CVQKKGE APECKKFA YY
Sbjct: 126 EYHR-------------------------------------CVQKKGEHAPECKKFANYY 147

Query: 181 RSLYPSEWIEKWNEQRKLGVFPGPI 206
           RSL P EW+EKWNEQR+LGVFPGPI
Sbjct: 186 RSLCPGEWVEKWNEQRELGVFPGPI 147

[Close]

BLAST of Lsi05G000440 vs. ExPASy TrEMBL
Match: A0A1S3CQ05 (putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo OX=3656 GN=LOC103503497 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 7.8e-56
Identity = 126/205 (61.46%), Postives = 134/205 (65.37%), Query Frame = 0


Query: 1   VDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGE 60
           +DPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTN   +D RR G E
Sbjct: 6   IDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTN---DDHRRSGSE 65

Query: 61  DKDNKLNYKFNLKENLEFITIIGGLLIGSVVVDEGRLETAPTDLRFPFTNQTRHCYARYL 120
           DKD         K+N              VV+DEG +ETAP+DLRFPFTNQTRHCYARYL
Sbjct: 66  DKD---------KDN-------------KVVMDEG-VETAPSDLRFPFTNQTRHCYARYL 125

Query: 121 EYHRLEILLILHLLFLKYVGYGKIFVGSDNNLLHFQPSDDMCVQKKGERAPECKKFAKYY 180
           EYHR                                     CVQKKGE APECKKFA YY
Sbjct: 126 EYHR-------------------------------------CVQKKGEHAPECKKFANYY 147

Query: 181 RSLYPSEWIEKWNEQRKLGVFPGPI 206
           RSL P EW+EKWNEQR+LGVFPGPI
Sbjct: 186 RSLCPGEWVEKWNEQRELGVFPGPI 147

[Close]

BLAST of Lsi05G000440 vs. ExPASy TrEMBL
Match: A0A6J1F3D0 (cytochrome c oxidase subunit 6b-3-like OS=Cucurbita moschata OX=3662 GN=LOC111439604 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.9e-49
Identity = 112/198 (56.57%), Postives = 122/198 (61.62%), Query Frame = 0


Query: 8   RSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKLN 67
           R RD+SKVARGEQAPRP HEYGTVSKPPPPSS+S  SAQTNLDGN DRR GG+DKD+K  
Sbjct: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSDRRHGGKDKDSK-- 65

Query: 68  YKFNLKENLEFITIIGGLLIGSVVVDEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLEI 127
                                 VVV+EG +ETAP D+RFPFTNQTRHCY RYLEYH    
Sbjct: 66  ----------------------VVVEEG-VETAPNDMRFPFTNQTRHCYTRYLEYH---- 125

Query: 128 LLILHLLFLKYVGYGKIFVGSDNNLLHFQPSDDMCVQKKGERAPECKKFAKYYRSLYPSE 187
                                              +QKKGE APEC KFAKYYRSL P E
Sbjct: 126 ---------------------------------SSLQKKGEHAPECDKFAKYYRSLCPVE 141

Query: 188 WIEKWNEQRKLGVFPGPI 206
           WIEKWNEQR+LG+FPGPI
Sbjct: 186 WIEKWNEQRELGIFPGPI 141

[Close]

BLAST of Lsi05G000440 vs. ExPASy TrEMBL
Match: A0A6J1IE20 (cytochrome c oxidase subunit 6b-3-like OS=Cucurbita maxima OX=3661 GN=LOC111471817 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.6e-45
Identity = 106/199 (53.27%), Postives = 119/199 (59.80%), Query Frame = 0


Query: 8   RSRDVSKVARGEQAPRPAHEYGTVSKPPPP-SSTSVPSAQTNLDGNDDRRRGGEDKDNKL 67
           R RD+SKVARGEQAPRP HEYGTVSKPPPP SS+S  SAQTNLDGN + R GG+D+    
Sbjct: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGNHRHGGKDE---- 65

Query: 68  NYKFNLKENLEFITIIGGLLIGSVVVDEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLE 127
                                G VVV+EG +ETAP D+RFPFTNQTRHCY RYLEYH   
Sbjct: 66  --------------------YGKVVVEEG-VETAPNDMRFPFTNQTRHCYTRYLEYH--- 125

Query: 128 ILLILHLLFLKYVGYGKIFVGSDNNLLHFQPSDDMCVQKKGERAPECKKFAKYYRSLYPS 187
                                              C+QKKGE  PEC KFAKYYRSL P+
Sbjct: 126 ----------------------------------SCLQKKGEHVPECDKFAKYYRSLCPA 142

Query: 188 EWIEKWNEQRKLGVFPGPI 206
           +WIEKWNEQR+LG+FPG I
Sbjct: 186 QWIEKWNEQRELGIFPGSI 142

[Close]

BLAST of Lsi05G000440 vs. NCBI nr
Match: XP_038886888.1 (putative cytochrome c oxidase subunit 6b-like [Benincasa hispida])

HSP 1 Score: 237.3 bits (604), Expect = 1.2e-58
Identity = 130/206 (63.11%), Postives = 134/206 (65.05%), Query Frame = 0


Query: 1   VDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGN-DDRRRGG 60
           VDPHDKMRSRD+SKV RGEQAPRPAHEYGTVSKPPPPSS+SVPSAQTNLDGN DDRRRGG
Sbjct: 6   VDPHDKMRSRDISKVTRGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGG 65

Query: 61  EDKDNKLNYKFNLKENLEFITIIGGLLIGSVVVDEGRLETAPTDLRFPFTNQTRHCYARY 120
           ED DNK                           DEG LETAP DLRFPFTNQTRHCYARY
Sbjct: 66  EDTDNK---------------------------DEG-LETAPNDLRFPFTNQTRHCYARY 125

Query: 121 LEYHRLEILLILHLLFLKYVGYGKIFVGSDNNLLHFQPSDDMCVQKKGERAPECKKFAKY 180
           LEYHR                                     CVQK+GE APECKKFAKY
Sbjct: 126 LEYHR-------------------------------------CVQKEGEHAPECKKFAKY 146

Query: 181 YRSLYPSEWIEKWNEQRKLGVFPGPI 206
           YRSL P EWIEKWNEQR+LGVFPGPI
Sbjct: 186 YRSLCPGEWIEKWNEQRELGVFPGPI 146

[Close]

BLAST of Lsi05G000440 vs. NCBI nr
Match: XP_031737981.1 (cytochrome c oxidase subunit 6B isoform X2 [Cucumis sativus])

HSP 1 Score: 236.5 bits (602), Expect = 2.0e-58
Identity = 127/206 (61.65%), Postives = 138/206 (66.99%), Query Frame = 0


Query: 1   VDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGN-DDRRRGG 60
           +DPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSS+SVPSAQTNLDGN DDRRRG 
Sbjct: 6   IDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGS 65

Query: 61  EDKDNKLNYKFNLKENLEFITIIGGLLIGSVVVDEGRLETAPTDLRFPFTNQTRHCYARY 120
           ED+DNK                        VV+DEG + TAP+D+RFPFTNQTRHCYARY
Sbjct: 66  EDRDNK------------------------VVMDEG-VGTAPSDIRFPFTNQTRHCYARY 125

Query: 121 LEYHRLEILLILHLLFLKYVGYGKIFVGSDNNLLHFQPSDDMCVQKKGERAPECKKFAKY 180
           LEYHR                                     CVQKKGE APECKKFAKY
Sbjct: 126 LEYHR-------------------------------------CVQKKGEHAPECKKFAKY 149

Query: 181 YRSLYPSEWIEKWNEQRKLGVFPGPI 206
           YRSL P EW+EKWNEQR+LGVFPGP+
Sbjct: 186 YRSLCPGEWVEKWNEQRELGVFPGPM 149

[Close]

BLAST of Lsi05G000440 vs. NCBI nr
Match: XP_008465918.1 (PREDICTED: putative cytochrome c oxidase subunit 6b-like [Cucumis melo] >KAA0038526.1 putative cytochrome c oxidase subunit 6b-like [Cucumis melo var. makuwa] >TYK31123.1 putative cytochrome c oxidase subunit 6b-like [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 1.6e-55
Identity = 126/205 (61.46%), Postives = 134/205 (65.37%), Query Frame = 0


Query: 1   VDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGE 60
           +DPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTN   +D RR G E
Sbjct: 6   IDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTN---DDHRRSGSE 65

Query: 61  DKDNKLNYKFNLKENLEFITIIGGLLIGSVVVDEGRLETAPTDLRFPFTNQTRHCYARYL 120
           DKD         K+N              VV+DEG +ETAP+DLRFPFTNQTRHCYARYL
Sbjct: 66  DKD---------KDN-------------KVVMDEG-VETAPSDLRFPFTNQTRHCYARYL 125

Query: 121 EYHRLEILLILHLLFLKYVGYGKIFVGSDNNLLHFQPSDDMCVQKKGERAPECKKFAKYY 180
           EYHR                                     CVQKKGE APECKKFA YY
Sbjct: 126 EYHR-------------------------------------CVQKKGEHAPECKKFANYY 147

Query: 181 RSLYPSEWIEKWNEQRKLGVFPGPI 206
           RSL P EW+EKWNEQR+LGVFPGPI
Sbjct: 186 RSLCPGEWVEKWNEQRELGVFPGPI 147

[Close]

BLAST of Lsi05G000440 vs. NCBI nr
Match: XP_023542926.1 (cytochrome c oxidase subunit 6b-3-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.0 bits (528), Expect = 7.8e-50
Identity = 111/198 (56.06%), Postives = 125/198 (63.13%), Query Frame = 0


Query: 8   RSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKLN 67
           R RD+SKVARGEQAPRP HEYGTVSKPPPPSS+S  SAQTNLDGN DRR GG+D+D+K+ 
Sbjct: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNGDRRHGGKDEDSKV- 65

Query: 68  YKFNLKENLEFITIIGGLLIGSVVVDEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLEI 127
                                 VVV+EG +ETAP D+RFPFTNQTRHCY RYL+YH    
Sbjct: 66  ----------------------VVVEEG-VETAPNDMRFPFTNQTRHCYTRYLDYH---- 125

Query: 128 LLILHLLFLKYVGYGKIFVGSDNNLLHFQPSDDMCVQKKGERAPECKKFAKYYRSLYPSE 187
                                             CV+KKGE APEC KFAKYYRSL P+E
Sbjct: 126 ---------------------------------SCVRKKGEHAPECHKFAKYYRSLCPAE 142

Query: 188 WIEKWNEQRKLGVFPGPI 206
           WIEKWNEQR+LG+FPGPI
Sbjct: 186 WIEKWNEQRELGIFPGPI 142

[Close]

BLAST of Lsi05G000440 vs. NCBI nr
Match: XP_023542925.1 (cytochrome c oxidase subunit 6b-3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.6 bits (527), Expect = 1.0e-49
Identity = 111/198 (56.06%), Postives = 125/198 (63.13%), Query Frame = 0


Query: 8   RSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKLN 67
           R RD+SKVARGEQAPRP HEYGTVSKPPPPSS+S  SAQTNLDGN DRR GG+D+D+K+ 
Sbjct: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNGDRRHGGKDEDSKV- 65

Query: 68  YKFNLKENLEFITIIGGLLIGSVVVDEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLEI 127
                                 VVV+EG +ETAP D+RFPFTNQTRHCY RYL+YH    
Sbjct: 66  ---------------------VVVVEEG-VETAPNDMRFPFTNQTRHCYTRYLDYH---- 125

Query: 128 LLILHLLFLKYVGYGKIFVGSDNNLLHFQPSDDMCVQKKGERAPECKKFAKYYRSLYPSE 187
                                             CV+KKGE APEC KFAKYYRSL P+E
Sbjct: 126 ---------------------------------SCVRKKGEHAPECHKFAKYYRSLCPAE 143

Query: 188 WIEKWNEQRKLGVFPGPI 206
           WIEKWNEQR+LG+FPGPI
Sbjct: 186 WIEKWNEQRELGIFPGPI 143

[Close]

BLAST of Lsi05G000440 vs. TAIR 10
Match: AT1G22450.1 (cytochrome C oxidase 6B )

HSP 1 Score: 112.8 bits (281), Expect = 3.2e-25
Identity = 54/113 (47.79%), Postives = 64/113 (56.64%), Query Frame = 0


Query: 93  DEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLEILLILHLLFLKYVGYGKIFVGSDNNL 152
           DE +LETAP D RFP TNQTRHC+ RY+EYHR                            
Sbjct: 115 DEIKLETAPADFRFPTTNQTRHCFTRYVEYHR---------------------------- 174

Query: 153 LHFQPSDDMCVQKKGERAPECKKFAKYYRSLYPSEWIEKWNEQRKLGVFPGPI 206
                    CV  KG+ APEC KFAK+YRSL PSEW+++WNEQR+ G FPGP+
Sbjct: 175 ---------CVAAKGDDAPECDKFAKFYRSLCPSEWVDRWNEQRENGTFPGPL 190

[Close]

BLAST of Lsi05G000440 vs. TAIR 10
Match: AT4G28060.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 105.9 bits (263), Expect = 3.9e-23
Identity = 50/113 (44.25%), Postives = 61/113 (53.98%), Query Frame = 0


Query: 93  DEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLEILLILHLLFLKYVGYGKIFVGSDNNL 152
           DE  L+TAP D RFP TNQTRHC+ RY+E+HR                            
Sbjct: 3   DEIELKTAPADFRFPTTNQTRHCFTRYIEFHR---------------------------- 62

Query: 153 LHFQPSDDMCVQKKGERAPECKKFAKYYRSLYPSEWIEKWNEQRKLGVFPGPI 206
                    C   KGE A EC++FAKYYR+L P EW++KWNEQR+ G FPGP+
Sbjct: 63  ---------CTTAKGEDANECERFAKYYRALCPGEWVDKWNEQRETGTFPGPL 78

[Close]

BLAST of Lsi05G000440 vs. TAIR 10
Match: AT5G57815.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-22
Identity = 48/113 (42.48%), Postives = 61/113 (53.98%), Query Frame = 0


Query: 93  DEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLEILLILHLLFLKYVGYGKIFVGSDNNL 152
           DE  L+TAP D RFP TNQTRHC+ RY+E+HR                            
Sbjct: 3   DEIELKTAPADFRFPTTNQTRHCFTRYIEFHR---------------------------- 62

Query: 153 LHFQPSDDMCVQKKGERAPECKKFAKYYRSLYPSEWIEKWNEQRKLGVFPGPI 206
                    C   KGE + +C++FAKYYR+L P EW++KWNEQR+ G FPGP+
Sbjct: 63  ---------CTTAKGEESNDCERFAKYYRALCPGEWVDKWNEQRESGTFPGPL 78

[Close]

BLAST of Lsi05G000440 vs. TAIR 10
Match: AT1G32710.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-17
Identity = 59/191 (30.89%), Postives = 75/191 (39.27%), Query Frame = 0


Query: 1   VDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGE 60
           +DPHDKMRSRD+SKVARG+QAPRPAH  GTVS PP   +T                    
Sbjct: 6   MDPHDKMRSRDISKVARGQQAPRPAHTPGTVSPPPENEAT-------------------- 65

Query: 61  DKDNKLNYKFNLKENLEFITIIGGLLIGSVVVDEGRLETAPTDLRFPFTNQTRHCYARYL 120
                    F  K                   D GR   A  + RFP TN+TRHC+ R++
Sbjct: 66  ---------FRAKRG-----------------DSGRETDAAVEERFPVTNETRHCFNRFM 113

Query: 121 EYHRLEILLILHLLFLKYVGYGKIFVGSDNNLLHFQPSDDMCVQKKGERAPECKKFAKYY 180
           +YH+                                     C++K G  A +C     Y 
Sbjct: 126 QYHK-------------------------------------CIEKNGRDANDCNNLRDYV 113

Query: 181 RSLYPSEWIEK 192
           RS+ P E + K
Sbjct: 186 RSICPEELVSK 113

The following BLAST results are available for this feature:

BLAST of Lsi05G000440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7L9	4.5e-24	47.79	Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=...	[more]
Q9SUD3	5.5e-22	44.25	Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=...	[more]
Q945L0	2.1e-21	42.48	Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=...	[more]
Q9LPJ2	2.0e-16	30.89	Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana OX=3702 GN...	[more]
O94581	6.7e-12	34.58	Cytochrome c oxidase subunit 12, mitochondrial OS=Schizosaccharomyces pombe (str...	[more]

BLAST of Lsi05G000440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEH8	9.9e-59	61.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910720 PE=4 SV=1	[more]
A0A5D3E4S8	7.8e-56	61.46	Putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CQ05	7.8e-56	61.46	putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A6J1F3D0	1.9e-49	56.57	cytochrome c oxidase subunit 6b-3-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1IE20	1.6e-45	53.27	cytochrome c oxidase subunit 6b-3-like OS=Cucurbita maxima OX=3661 GN=LOC1114718...	[more]

BLAST of Lsi05G000440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886888.1	1.2e-58	63.11	putative cytochrome c oxidase subunit 6b-like [Benincasa hispida]	[more]
XP_031737981.1	2.0e-58	61.65	cytochrome c oxidase subunit 6B isoform X2 [Cucumis sativus]	[more]
XP_008465918.1	1.6e-55	61.46	PREDICTED: putative cytochrome c oxidase subunit 6b-like [Cucumis melo] >KAA0038...	[more]
XP_023542926.1	7.8e-50	56.06	cytochrome c oxidase subunit 6b-3-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023542925.1	1.0e-49	56.06	cytochrome c oxidase subunit 6b-3-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi05G000440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22450.1	3.2e-25	47.79	cytochrome C oxidase 6B	[more]
AT4G28060.1	3.9e-23	44.25	Cytochrome c oxidase, subunit Vib family protein	[more]
AT5G57815.1	1.5e-22	42.48	Cytochrome c oxidase, subunit Vib family protein	[more]
AT1G32710.1	1.4e-17	30.89	Cytochrome c oxidase, subunit Vib family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	GENE3D	1.10.10.140	Cytochrome c oxidase, subunit VIb	coord: 93..130 e-value: 1.8E-9 score: 39.6
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	GENE3D	1.10.10.140	Cytochrome c oxidase, subunit VIb	coord: 154..205 e-value: 6.5E-13 score: 50.4
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	SUPERFAMILY	47694	Cytochrome c oxidase subunit h	coord: 97..125
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	SUPERFAMILY	47694	Cytochrome c oxidase subunit h	coord: 162..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR46281:SF14	CYTOCHROME C OXIDASE SUBUNIT 6B-1	coord: 162..205 coord: 3..124
None	No IPR available	PANTHER	PTHR46281	CYTOCHROME C OXIDASE SUBUNIT 6B	coord: 162..205 coord: 3..124
IPR003213	Cytochrome c oxidase, subunit VIb	CDD	cd00926	Cyt_c_Oxidase_VIb	coord: 93..204 e-value: 1.21578E-30 score: 105.468

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G000440.1	Lsi05G000440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV