Lsi05G000040 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G000040
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionS-protein homolog
Locationchr05: 59046 .. 72881 (+)
RNA-Seq ExpressionLsi05G000040
SyntenyLsi05G000040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGGTGATTATTTTTAAATTTTTTGGTTACTTTAGATATTAGAGAGATGGTGAAAAAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAAGTAGTGGCAAAAAAGATAAACAGCCATTTCCAAAAGGTATGGAAGCTCTCAAATGTTTATCAATCTTGGGTATGCTTTTAGCATTGGGTGGACAATGCTACGGGCAGCCAGGTGAAGAGGTTCCATTGAGTTCATGGAAGATTAACATTTTGAATGATATGAGCAAAGAGTCGTTGTTTCTTCATTGCAAGTCTAAAGACGATGATTTGGGTGAACAAAATCTATCTGTGAGACAACAATTTTCTTGAAATTTCAAGGAGAATTTATGGCAAACAACACTCTATTGGTGCTATATGCACAACGACAATAGTCATGCTTCGTTTAATGTCTTTTGGCCTGAGAAATCTGGTTGGCTTGCTTTCAGATGTCAATTCAAAAACTGCATTTGGTCGGTTCGAAATGATGGAATTTACTTGAAGACCAACACCCATAATACATTTGAGCACATACATACTTGGGAACCTGGGATGTGAATCAAATTTATTTTTTTCTTGAAAAATACTTAGATGCATCTCGGGGAGCACTTATTTTTGTGCATCCCTCCAAATTGTTCTATCATAATGTGACATGGGGCAAACTATTTTTATTCATTTTTTGAAATATTTTAATTATTTTTTTGGTGTGAGTGATGGAAGGAGAAGTATAGAGATAAGTACATCGTGGAATGCACCCAAGTATTACCCTTTTTTTTCTTCATGATTTGATATTTCAATAATAATAATACTATCAATATGTATTACGTTTAGTACTTACATTTTATTTCTAATGCATATTCCAACGATTATTGTCTACAAAATCCTCTGATATATAGTATATTGGGGAAAGAAATTACAATTCTTCCATAGTCTATTACATGATAATATTTTTTTTACAATATGGGGTGGGGGAATGAAACCTCTTTGACTTCAAGATTGATTATTACATATTTTATCTTAATTGAATTATAATTAATTTTGGCTAGAATGATACATTCTTATTAACTAATAAAAGAAAGTAGTGAAATTGACTTAACTTACTAAATATAACATAATTAGAAAGCATGAGTATATTTGTTAAAAAAAAATGAATAGAACCATATTTATATACTTTCATCGTTTTAAAATTAAATCATTCATTAAATGTTTCACTGAACTTTAAAATTACTAAAACGGTCTAAAACATTATTTCAGGTATCTATTTTCTTTTGTATGGGGTAGTTGCATGAATGAAAAAAAAATTCGTAATTTTTTTTATTATGAAATGTGCAAATATACAAATAAAAAATTATTGTGTATAGAAAAAAAAAAAACAAAACTAATTATACATATAGAAAAAAGTGCACCCCATGCTTTTGTATTTTTCACTTGTTTTTTCTATATATGTAATTAGTTTTGTTTTTTTTTTCTATTTGTAAAAAGACCGCATAAATAAATTTGATTTTCATTCTTTTATCAACTTTTCCCACATGAATGCTCAATATCTATATTTCGGTAGTGTATATGTACGATGATATATTTTATGTTTAGTATGTAGTTAATATTGATATAAGAGTAATTATAGTGAGTAGCAATTTTAAGAATAATAATTAAGTGTATAGTAACATTTTAAAAAAATTGCAAATATAGCAAAGTCTATAAGTGATAGACCACCTACACTATAAAAGTCTATCGCTGATAGACTTTGCTATATTAGCAATTTTTTAAAATTTTGCTATATATGTTAATACTTTGAATCTGATTGCTATATTTGCAATTGTCCCCTGATATAATTTATACTTGACATATCAGTCAACTAATATACAATTTATAGAACATACAAGTTATGAAATTGTTATACTAAATTATATCATTCATATACCAAATTTATTAGTCAACAAGTTTGAATGAGTATTGATAAGATATGACATACCATATGTGTCATATTTAGTATTGCATTTTGAACGAATGATGATACTATTGATACACTAACGGTATACTTTGAAATCCACGTTAAATTAATACTAATATACAATTAAATATCAATGTTGTACTTTAAGTGTATATCATTGTGAATGATATACTTTATATTTGGTACATTAACAATAGTGTTGATACACATTTTTTCCTTTCTTTAAATCTATTACATATACAAACTAGTATAGACAAAATATGAAGTATATCTATTATACAATTGATATACCAAATTAAATATAACTGATATTACCACTAATATCATGTCAACCTTTCGAAAATAGAACAGATTAACTGACATACTTTACATTTTGTATATCAATTGACATAATTAATACAATTAAGATATACCATCAAAATCGAAAAATTAATCGAATGAAAATAATTTAATTTCAAAACGAAATGAAAAACAAAAATGACAGCTTCTATAATTGTAAGAAAATAGCTTGTGTTTGATGTAAAATTATATAAAAAATGTTTTATGCTACACAAGACGAATCACCTATTGCATCTACTTAAGTGCAGATCAATGCAATACTAAGTAGTACCTGGAGTATTTTAAGGTAGATTCCTCAAGGACTCTATCCAATGTAATAATATTATGCTTTTCTCACGGTATTCTATTCAATATTGTGCAGAAGGGTAACTAATAAAATTTAGGGCAAAATACACTTTTGGTCCCTGAGGTTTGGGGTTGTTGTCTATTTGGTCCCTGAAGTTTAAAAACGAACACTTTAGTCCCTGAGGTTTGAAAAATACTTCTAAATGGTCCCTGAGTTAATTTGACTGTTAGTTGACTAACAGAAAAGTGATGTGGCACATTTAATTAACAATTTTTATTATTTTTATATTATTTTTTTTATTAGGTGGATATTTTCTTTTTCTTTTTTCTTCTCTCTCCTCCCTTCTCCTTTCTTCCTCCCTCCACCCCTCCCTTGAAAATTACCTCTTTTTTTATACACTGATCACACCCATCACTAAGGAAGAAAAACAGTCAACTTATTATTATTTTTTATTTTAAAATTTTTATGCAACAGTTCCTTTGTGGAATTTTTGTTTCTTCACTCTCTTCTTGGAATTTTTGTTTCTTCAACCTTTCTTTTCTTTCAGAAAAAGTCAAATAATAAATATGACATTTGAGAGAAAGAGAGAGAGAGGCATGGAAGAGAAAAACATTTTAAAGATTTTTTTTTATTGAGTTTGAGAAAAGAAGATTTTTCTATATGCCTTATTTTCTTTGCTTTTGGTCTGCTTGCTTCCTTCATCTTTTTCTTGCGATTGGAGATTTGAAAAATTGGATGGATCAATTAAAGCTGAAGGAGTGAATTTTTTTTTGTTTTATTTTTTATTTCCAAAATTAGAGTTCATCCTTCTAGATTTTTGTTTTTCTTATCTTTTTTTGTAAAGAAGGTGAAGGGACGAGAGAAAGGAAAGGGAGAGAGAAGAAAAAGAAAAAAGAAAAATATATCTAATTAAAAAAATAGAAAAATTAGTAAAAAAATTTCCACCTCATTTAAAGTTTGTAACTCAACTTGCCATATCACTTTTCCGTTAGTCAACTAATGGTCAAATTAACTCAGGGACCATTTAGAAATATTTTTCAAACTTCAAGGACTAAAGTGTTCGTTTTTAAACTTCAGGGACCAAATAGACAACAACCCCAAATCTCAGGGACCAAAAGTGTATTTTGCCCTAAAATTTACTATAGTGTTTGTTTTGATGTCGTTGTAATTAAACGTGCTGTAAATAATAAAAAAAACAAGTGAGGAAAATGTATGAGATGTGCAACATGCAGTTGAATGAGGGTAGTTGGATGTTGTAACTTTAATGTAACAGGAGCGCATATTTGACTACTTGTTATATGAATTGTATAAAGTGATTTGTTGTGCTAGTGTTACTCGATCTTATTTGTTGCATAATTATGGATGGTTCTTGAAATAAAAATGAAAAATAAAAGCAAATAAAACTAAATAAATAGAACATTATTTGAATTTATAGTCAAATTCTAAAAACGGTTACCGGTGTTTGAAAACAATTTTTTAGTTTTCAAAATTTGACATACTTTTTTTGAAAACATTATTAGAAAGTAGATAGTAAAACATAATTTGTAGGTAGAATATAAGCTTAATTTTTAAAATTTATAAAGTAAATGAGATTATAACAAATAAATTCACGTAATTTAATACGTTATTGTCAAATTTTAATGAAAGAATTGAAACTTTCTGAATAACAAGAACTCATTCTTAAAATTTTTTAATAAAGAGTGAAACTCTCAATTGATAACTTGATTAACTAGGTAGAAAGTAAAATCCATATAACGTTTTATTTTATTTTATTTTTGAGTACAAGATGTTTGACATAATGTTAGAGAATCAATTAGTAATGTTCATTAAATATAGTTTTTAATACATCACAAAACGTTATAGTTGAAAACAAGAAGCTAATATTGATTAAAACTATATTTAAGTTATTTTTAATTCAATATGTATGTTGGAGTTTTTTTTTTTTATTTTATGAAAGTAATTAATCTAGGACGTTTCTTATCTCTATGGCATAACATATCATATAACTCATATTTTCACCTCTATATATTACACCAAACATTAACATTAAGCACTCATCTTCAATTTAGCAACAAAACTTAAAAAGAAATTTCTTCCAAAATTGCAAAGAAAATATGGTGAAAAATCTCAAAAATTTGATGAGATTCCTTTGGATTTTTTCAATAGTGATGGTACAAACATGCTTTGCTATTCCATTTGAGCAATGGACAGTTCAAGTAGTAAACAACATGAAAAGTGGTCAACCTCTATTTCTTCATTGCAAGTCCAAAGACGACGATTTGGGAGTTCATAATTTGCAAGTTAGACAACAATTTTCATGGAAATTTAGAGAGAATATCGTACAATCCACATTGTTTTGGTGTTACATGCGTAGTAATCACGGTCATATTGCTACGGAAGTATTTTGGACAAATAGTATTTATGCATGGCTTTCTTATAGATGTGGTAACCAAACTTGTGTTTGGTCGATTCGAGATGATGGAATTTATTTGAAAGATGCTACTCTAAATAATAAATTTGAACTCATGAGGAATTGGACGCCAGGCTCGTAGAGTTTCATCTCAAGGGAGTATTAATATTATACATCTATTCCATTATTGTTGTGCAATTACATTAATAAAAGCTATATATTTTGTGTTACTTTTGTTCACAAGTGTGTAATTTTTAATAATTATAAATCCCAATAAATGTACACTATTTGTGATCATTCTGAATTGTGTTTCATTTCAATCTAAATTTAATAATGAGGGGTAAGGGTCTTTTTTTTTTTTTAGAAGTTTTCTCGATGAGAATTGACACATAAAATAAATAAAATTCAAGTTTGTTACACAATTTTCAATGCATCATTTGAAAATAACTTATTAACAAAATCCTCCATACATCATCTTTTTCTCTTGACAAGAATTTTTTTTATGATAATTTTAGGTTAGAAATTACTCTTAGTTAGTAAACTTTTTCAAAATTAACAATTTAGTCAATGAACTTTGGTTTGTGACGATTTAATCCGTGAACTTTCAATTTTGTAATAATTTACTTCCTGAACTTTTTTATGTAATAATTAATTAGTTCTTGTGCTTTAATATTTATATAAATGTAGTTCCTATTATAGACATTAGTGTTAAGTTTTACTGAGACTTCTTGCATTAATAAATCGATAAACTAATTAAAGACTCAATATTTTTATAAAATACAAGGTCTAAGTCATAAAATAATAAGAATTGACATCTAATTTTGATTCTTTTTTGTACGCTAGGGATTAAATTGTTACACATTTTGAAATACAATTACTAAATTATTAGATACTAAAGTCCAAGGATTAATTGGTACAAAATTAAAAGTACAAAGCCTAAATTATTACGAACTAAAATTCATAGACTAAATTGTTACTTTTATGAAAATTTAAAGACCAAAAGTGTCTATTAATCTAAATTTTAAATTCAAAGTTTTCTATTGGCCCCTTTTTATTCATTTGTTTTTCATTTAAATCTAAATTTTGCTCTAAATGAATATTGTATAGCAGCCAACTTGATCACAGTACAATTGGTAAATGTATTATTGTACTCTTAAATACTAAGGGGTAAGGGTTTATTTGTTTTACAGGTTTTTCATTGGATTTCAGATAAACATTTAACAAGATTTTACTTTTTTAAACCTGATATATTATTGTCAAGGAAACTTTAAAACTCATCTAAGATTGGTTTTTTTAATATCATGCATAATAGTGGAAATTTTATGTCATGGGATGAACATTTAAAATAAAGCCTGATTAATTAATAAATTATTATCAATTCATCATTACTATTAATTTTAATTTATTATTAAATATAAATATATTATTTAGACTTAATAAATTTCAATTAATACATTCAAAATTCATATTTTTTATTATTTAACTATTTAATATAAACTATTCTTATTAATTATTAACATTTTAATTAATCTTTATTGATTTAATTATATTTAATAGTTAGTTTAAATAATTTAATTATGTTTAATAAATGTACAATATAACAAAAGGGTTGTTTTCAAATATAGGAAAATGAACCAAAATATTTATAAATATAGTAAAATTTTACTGTCTATTTGCGATGGAACCCGATAAACCACGATAGACTACTATCTGCGTCTATCTGTGGTCTATCACGACACAGATAGTAGTTTATCGTAGTCTATCGCGGTCTATCATAGATAGATATTGAAATTTTGCTATATTTATAAATATTTTCAGCATTTTGTCATTTAAAATAAATTTTCATAAAATATGGGAAATTATTATAAATAGAAAAAATATCAAACTATTTACAAATATAGAAAAATTTTTATTGTTTATCAGCGATAGACATCGATAGAAAGCAGTGATAGAATTCTATCGCGGTCTATCCCTGATAGACAGTAAAAATTTCTATATTTGTAAATAGTTTGACTAATTTTTCTATATTTGAAAACAACCCTAAAGATATTTATTTATTTTAATTGATTAAAAAATTAATTAATATAGTAGTATATTAAATAATGTTAAATTTAATTGATGATTCCATTAATTGGTCTTTTGCATTTAATTAAGTAATTATTTATTTTTTGATTTTTATGTATAAAATTGGAAAATCAAACATTAATATTTAATATTCATATATTAATTATTCTGCATATCTAAACTGTAAAGAAATGTTGAGATGAAAATATGCCACGAGAAGTACTCAATTCAACAAGTGGTAAAAACTCTTGGGTTGGGCAAACAGAGGAAAGACAAAGAATAAATGGCAAATTTGAAGAAAGAAAGTTGAATGATAAAAGCAAAGAAGAAGAAGATGAAGACACAATATTAGAGTGGTTTGGTCAAGAGTGACCTACATCCACTATGAAAGACAGTAACAACTTTATTCAATATAAGAAAGAAAAAAGGTAAGTACAATTTTCACTCTACAAGATTCTTAAAAACTCTCTACTTAAAAGCTTTAAAACTCTAGCTATTTAAAGTTGTTCTGAGAACAGGAGTGAAGCCGTTGGAAGAGATTCTGATGTAATTCACCTTAATACCCTTCAATCTCCACCTTGAATTATTCAGAATAAAGTTGCAGCCCTTCTAAAACAATAACCCATTTTCTGGTAGATTAAATTGCATTTGGTTTAGACAGAACTCAAATTTATGTCTTCCAACTAATTTAGTTAGGATGTCAGCCAAATTCTCTGAGGTATGAACTTTAAGAACTTCGATTAACCCTTTGCTGATTTGGTCTCTTATAAAGTGATATTTAATATCTATATGTTTTGATCGACTATGAAATTGCTGGTTCTTTGATAAGTAGATAGCACTTTGGTTATCACAATATATCTTCACAGTGGGTTGAGATATTCCCAAATCACTTAAGAGACCTTTGAGCCATCAACCTTCTTTGATTGCTTCAGTAAGGGCTATAAACTCTACTTCTGTTGAAGAGAGTGCAACTACTGTTTGAGAGATGTCTTCCAACTTAGAACATTACCTCCAAATAGGAAAATATAGCCAGTTAGAGACCTTCTCTTATCCAAGTCTCCTACATAGTCTGAATCAATGAATCCATGAGTTCCATTTGATCATTTGAGGTTTGTTTGTATGTTAACTTGGCTGTTTGAGTACCCTTCAGATATTTTAGAACCCACTTTGTTGCTTCCCAATGTCTTTTTCTAGGTGTAGACATACATCGACTTACAAAGCTAGATGAGTAGGATAAGTTAGGTCTTGTTGATATCATGAGGTACATGAGGCTATCCACTGCTTGGGCATATGAAACATTTGCCATGAATTTGATATGATCAATTTCCTCTGGCTTTGGAAAATTCTATTGAGACAACTTAAAATGAGGGGCTTATGTATGGACATAGACTTTGCATCTTTCATTTTAAATCTCTGAAGAATCTTATTGCAATCAGAACTTTGGCTAATGCTGAGAAGTCCTTTACTTCTTTTCCTTTGAACTTCAATGCCCAAAATCTTTTGTGTTGCTCCTAGATCTGTTGGTGAAAATTTTAGTTTTTAAACAAAAAGTGATTTTTTTGGAAATGTGAGAATCTCACATTGCTTAATTAACCATTGGGATCTCACCTTATTTACCCTCTCCTTTAGCACTAGGCTTGGGCCCAAAGGGGTACCCATATTTTAGAAAGGGTGAGGAGATAGACTATGGTGGGCTTGGTGGCTTCTTCACACGTGCATTTCCATCGTCGTCCGTTTGTGAGGTGGAAATAAGTTTTAATTTTCTTTTATTATTATTTTTTAAATAAAATGTACCATTTTTCCACTCGTCGCATCTACTGCATGGTCAACCGGGCCTTCGTACCCGGGCCATTTTTTCAGCGCACGTGCAGTGGACGAGCACTCACCTCGCGAAACATGTTATGTGGCCAAGCGCTCGTCCAACATTCGTCGGTTGGTCTTCGAGGTGTATTTAAGGTCGACTTCACCAGCTGAAAGACAGAGAAGAACAAAAATCGTTTTTTAGCGAGAGCTTTTCAAGATTGTTCTATTTTCTGTTTTCTGAGCATTTGAAGGGTGTGAGTATTCCATTCGTTACTTGTGCAAGTTTTGATCGAGACAGACTTTACCTCTGGGCTGTTTTATCCTGGGACGGTGTGGCAACAATTCCGAACTGCTTGCACCTTGGGCAAAGCCGCAAAACGTCTTAAAGAGAGCGAGCTCCGCGACTTAACCTCGCGACTTAACCTTCACGAGTTTTTTGAGTTGCAAGCGTCCACTACCAGGCGTTCAGTACAAGGCGTCCATCACTTGGCGTTCAACATCAGGCGTCCAGCACTAGGCGTTGACCACCAGGTGTCCAGTTCCTTGCGTTGGCTGTCAAAGTGTTCAACTTCTCAACGCATAATACTAGTACCAACAAGATCTTTCATATCAAATTTCTTTTTCAAAAGAGATTTGACAGTGGTGAGAACTTCCCGTGATTTGCTTGCTATTAGCATGTCATCTACATAAAGTAGTAGAAAAACAGGGCACTGATAGGAATTAGTGTTTATATAAACACAGCTGTCATAAGCATTCTTTTGAAAGTGGATTTTTGACATGAAGGTGTCAAATCTTTGATATGTATCTAGGGGATTGCTTCAAGCCATAAATGGATCTATTTAATAAGCACACATGATCTTCTTTTTCTTTTTCTTCATAGCCTTTAGGTTGCCTCATATAAATTGTTTCTGTTAACCTTCCATTTAAGAAAGTTGTCTTCACATCCAACTGGTGAAATTCTAGATCAAGTTGGACCACCAAAGCTAGAAGAATTCTTACGGATGTATGCTTCACAACAGGTGAGAAAATTTATGTGTAATCGATTCCCTCTCTTTGTGAAAAAACCTTTGGCCACCAATCTTACTTTGTATCTATGTTTTTGCACTCCAGGAACACCTTCCTTGATTTTGTAAATCCATTTGCAATCAATTAGTTTACACTCCTTTGGAGCTTGGATAAGAGACCAAGTGTTATTGATTTGACCCAGTTGTAGTTACAGGCAATTGTGAAGGGTCGACTTACTGTTGATTGATAATATCCATGGACACATAAATATATCTATAGTGCGAAGACTGCAACTGTAGGTCTTTAGTGGAGTGACCTACGATTAATGATTATTGATTAGTTTAATTAAAGAGTACAATTAATTAATCTCATATCATTGGAGCTTCTAATCTATAGGTCCATAGCTTCTTGCTAGCTCATTAAGGGTTTTGGTAAGAATCAATTATGTTAGATTAATTTAAATCATTCAAATTAAATAAGTGAATTAATTGTATATGATACAATTAATGTAATGTATGCAGATACATCATAATATAAAGTTTATTTTGAATAAGATTCAAAATTATACTTTATATTATGAGAGAGATAAATATTTGAATAAGATTCAAATATTAGTTATATGAATGAGATTCATATAAAAATTATAGGTTAAATTTAATGTGAATATGATTCATGTCAAAATTATAAGTTATGTGAGAGAATATTATTTGAATATAGTTCAAATTAAATTAAATATGTGATATTTAATTAATTAATTTTATATATATATTAAATATAATTTAATATATTTTAATTAAATTAAAATTATTGATTTAATAATATTAAATTTGATTTAGTTATTATTAAATTAATAAATTATTTAAAAAGAAAAATAACTCCCTTGCGAGTTAACTTCACGTGAGAGTGGGGAGTTGGTAACTCCCCACTACCCCTCTCTCTCACATAAACACACCCTTCATATAGAAGAGTAGGAGTCCCTTTTTTGGATCTTTGCAAGATTGATCTCCCTTCTCTCTATCTCTAAAATTCTCTCTAATTTGATATTCCTTTGTCAAAAAGGTTAAGAGCCCACATGATTCTTCCCTAGAAAATAGCTAGAAAGATCGTTTTGGTGGTGTCCCAAGAGGTAACGTTGAGTTCCAAGAAGTTTTTGGGTGTTCCCTGTGAAGAGAAAGAGAAATTATAAGAAGAAAATCTACAAAGATTTGTTAATTTTTTCTCTTAAATCTCTTCTCTGAAAAGCATGTTACTGTGGTTTAATGTTTATAATTTTTTTTCTTTGTTTTTCTTGTATTTTCCTAAATGGAAATTCTTGGCACAAAAGCGATAAAACGCTTCCGCGGGAAAAATTCATTCCTTCATTTATATGATTATTTAGCTTGTTTCGAGCAATTAAAAGATAGAACTAGGAGTTAGAGTTGAAATGGAGTTAAAACAGGCCAAAACGGAACTTAATTGCATCAACCGGGAGAAAGAAGGTCAAAGTGACCATTTTGGCCATGGTGCAGCAGCTCTCCTTAGGCGCCAGATCAATGCCTTTTCTCGAGAGATCAAAATTTCGAAGAAGGCCCTGGTGCCTCGACGCTCTGAAGTTAATTTCGGCGTGAATTCTCGTCAGCGTCGCGGTGCCACTTTGAATTTATAAATAATAGTTTTAGCCGCCTAAGTCATTCAGACACGAACCAACCGACTTCTACCTACATTTCTCTCTTTTTTCTTTTATCCTTTCTGTGATTTTGATGTATCAGAACAACTCTTTGGTGTCCATAATGAAGATCGTGGGCTAAGGTGCACGTTTCTAGCTTAGGCATAGAGTAGATTCCTCGTTCTTTTGCATACTTGTGAGATTTTGATATCGGTTTTGTAATTTTCTATATTGTTGACAATTTCTTCTCAATTTATAAATGATTCATGATTTCATTTCAACTTTGGTTGTGCAATCAATTGCTAGGGTTTAATTTGCGACGCGTGACAATAAATTGCATGTTAATCTGACGTAGGAAATGGTTCAATTAGCTTGTTGGTTGTAATTTATCTCAACGGACATTGCTTAATTAACTTAGGGAAGATTTGATTTGAATGGTTGATTTGACTTTTCTAATTGAATATTCAGCTTAGCAATTTCCTCAATCTTAAGGCGATTAGCTAAATTAGTAGGATGCTTATTATCTATTAGTTTAGTTCGTTCGATGATTTGGACCCTAACCTAGCTTTTAGGTGTAGGGATAAGGTAGACAATACGGAATAGTTTGATAATCTATTCAAGTTGGAAATTGGAGAATCAACTCTAAAGCCTAAGCTAGGATTTTTAATTATACGAATTCATTAGTTATTTATTTTTTTGTAATCGACAAACCAAATCTCAAACCCCCCTCCCCTCGGTTACCTCGGGTTGTTTATTAGAGAAATTTGAGGGCTCCTTGTGTTCGACCCGTACTACTGCTGTCACAAGCTTAGTAGGAATGGAAAAATTATTTGAGAGCCAAGGTCTTCAACAAGTCTTCGACGATCATTGGGTTGGGTCGGGGTTAACACTTTTAAAAATTCGGGTTGACCAACCCAACCCGAATTTTCAATATTATTAGAATATATATATATATATATATATATATATATATATATATATATATATTATAACTTATAAATATTGTAACTCATATATTGTTATGATGTTTGTTTGAAGTTTGTAATAGATATCTTGAATTTTGATATTTAATATTTGAATTTATGAAAATTTTAGTTATTAGTATGTGCGGTAGACAAATTTAAGTATTTTAAGTTAATAAATAAATATACTAAAAAAGAAAAAGAAATAAATAAATAACACGATAACCCAACCCAAAATTTAAGGGTTGGGTTGGAGACCCTATTTGGGTAGCCAACTCAACCAACCTGAATTTCTGAATTTTCGGATTAGTCCAAAAAATCCCCTCAACCCATGTACATCCATGCCCAAAAGATCCCATACTATTAAAGATAGTTGTCCTTCCTTATAAACTCATGATCATCTCCTTATTCAATCGATATGGAACTTTGATCACATCCCAGCAAGATCAAAGAGTAAAAATTTTAATTAATAATTAAACAAATTTATTAGCAAACTAAGAGGGGTCTAACAAACTCAGCAACTAAAGTACAGACACTCTGTTATCATTATCTTCCTCAATAACTTATGTTGCAATGTTCTTGTTCGAGCTCTAGTAAGGTACATGAAAATCAGATGAGTTTCATTGAAATCAAAATGTTGATATATTCGTCGTATATCCTCCATAAATCGGAGGGCGGGATATCAATAGTAAATATCTATTGATATCTTTCGGTATCTTTTATAAATTTTTGTAAACTATAAAAAATGTCATCTATTTAACCTAATATAAATAGAAATACTAATAACAATATCCATACTTTATTTGAAAGTAAAAAGAACTTAATTATGATCTAAACAAAATTTATAACTTTTTTTACTTACAAAAATATTTTTTTTTTAGAACAACAATTATGGAGATGAGAGATCGAACTTTGACATTTAATGAAGGACATGTCAATTACCATTGAGTTAAACCCACTTTGGCCCGTAAAATTGAAATCTTGATATCATTATCGACATCAATATTTTGTTCCTTGATTGAAATCAAAACAATTCAAATGCTCGATATTAAATTTTAAATTAGATTCCATACATTAAATTGAATTAATCATGAAAATAATATTCAAATTTAAAATAAAACTAATAGAGGAACAAAGGAAAAATCCACAAGTTACTCCTTAAACCTTTTATGGATAGTATGTATATATATATATTCATTAAACACTCAAAACAGATAATAGAAGTCTAGTTAGTGAACAACCAAACTTACACTGTGGGAAACACAAAAACAAAAGCCAAGAAAGCAGGTGGAGGAGATTTCATATGGCAGAATAATCGCCATGGCCGTCTTCTTGAGCGCAAGGCTGAGAAATAA

mRNA sequence

ATGTTCGCATTGGGTGGACAATGCTACGGGCAGCCAGGTGAAGAGGTTCCATTGAGTTCATGGAAGATTAACATTTTGAATGATATGAGCAAAGAGTCGTTGTTTCTTCATTGCAAGTCTAAAGACGATGATTTGGTGATGGTACAAACATGCTTTGCTATTCCATTTGAGCAATGGACAGTTCAAGTAGTAAACAACATGAAAAGTGGTCAACCTCTATTTCTTCATTGCAAGTCCAAAGACGACGATTTGGGAGTTCATAATTTGCAATTAGTGAACAACCAAACTTACACTGTGGGAAACACAAAAACAAAAGCCAAGAAAGCAGGTGGAGGAGATTTCATATGGCAGAATAATCGCCATGGCCGTCTTCTTGAGCGCAAGGCTGAGAAATAA

Coding sequence (CDS)

ATGTTCGCATTGGGTGGACAATGCTACGGGCAGCCAGGTGAAGAGGTTCCATTGAGTTCATGGAAGATTAACATTTTGAATGATATGAGCAAAGAGTCGTTGTTTCTTCATTGCAAGTCTAAAGACGATGATTTGGTGATGGTACAAACATGCTTTGCTATTCCATTTGAGCAATGGACAGTTCAAGTAGTAAACAACATGAAAAGTGGTCAACCTCTATTTCTTCATTGCAAGTCCAAAGACGACGATTTGGGAGTTCATAATTTGCAATTAGTGAACAACCAAACTTACACTGTGGGAAACACAAAAACAAAAGCCAAGAAAGCAGGTGGAGGAGATTTCATATGGCAGAATAATCGCCATGGCCGTCTTCTTGAGCGCAAGGCTGAGAAATAA

Protein sequence

MFALGGQCYGQPGEEVPLSSWKINILNDMSKESLFLHCKSKDDDLVMVQTCFAIPFEQWTVQVVNNMKSGQPLFLHCKSKDDDLGVHNLQLVNNQTYTVGNTKTKAKKAGGGDFIWQNNRHGRLLERKAEK
Homology
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BLAST of Lsi05G000040 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.8e-06
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 0 

Query: 58  QWTVQVVNNMKSGQPLFLHCKSKDDDLGVHNLQLVNNQTYTVG 101
           +W V VVN + +G+ LF+HCKSK+DDLG  NL+  N  ++  G
Sbjct: 40  EWQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFG 82

[Close]
BLAST of Lsi05G000040 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.5e-04
Identity = 18/43 (41.86%), Postives = 30/43 (69.77%), Query Frame = 0 

Query: 58  QWTVQVVNNMKSGQPLFLHCKSKDDDLGVHNLQLVNNQTYTVG 101
           +W V V N + +G+ LF+HCKSK++DLG  NL+ ++  ++  G
Sbjct: 40  EWQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFG 82

[Close]
BLAST of Lsi05G000040 vs. ExPASy Swiss-Prot
Match: O23020 (S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 7.3e-04
Identity = 18/33 (54.55%), Postives = 23/33 (69.70%), Query Frame = 0 

Query: 55 PFEQWTVQVVNNMKSGQPLFLHCKSKDDDLGVH 88
          PF + TV  + N+  G PL +HCKSK DDLG+H
Sbjct: 24 PFWRATVVTMTNLIGGPPLTIHCKSKQDDLGIH 56

[Close]
BLAST of Lsi05G000040 vs. ExPASy TrEMBL
Match: A0A1S4DWP0 (S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103490053 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-06
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 0 

Query: 49 QTCFAIPFEQWTVQVVNNMKSGQPLFLHCKSKDDDLGVHNLQLVNNQTYT 99
          Q CFA  F +WTV+V N+MK+G+ L +HCKSKDDDLG+  L +    T++
Sbjct: 23 QPCFAFRFSRWTVRVFNDMKNGEMLSIHCKSKDDDLGLRYLDVRTQFTWS 72

[Close]
BLAST of Lsi05G000040 vs. ExPASy TrEMBL
Match: A0A6J1ESI0 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111437333 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.2e-06
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 46 VMVQTCFAIPFEQWTVQVVNNMKSGQPLFLHCKSKDDDLGVHNLQLVNN 95
          VM ++CFA  F+ W ++V N+M  G+ L +HCKSKDDDLG   L++ NN
Sbjct: 17 VMSESCFAYRFDAWRIRVFNDMSHGETLKIHCKSKDDDLGRQTLKVGNN 65

[Close]
BLAST of Lsi05G000040 vs. ExPASy TrEMBL
Match: A0A6J1DEX4 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111020182 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-05
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 55 PFEQWTVQVVNNMKSGQPLFLHCKSKDDDLGVHNL 90
          P   WTV +VN + +GQ LF+HCKSKDDDLG HNL
Sbjct: 30 PMPTWTVDIVNELSNGQELFVHCKSKDDDLGEHNL 64

[Close]
BLAST of Lsi05G000040 vs. ExPASy TrEMBL
Match: A0A5N6QH19 (S-protein homolog OS=Carpinus fangiana OX=176857 GN=FH972_002535 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.1e-05
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 48 VQTCFAIPFEQWTVQVVNNMKSGQPLFLHCKSKDDDLGVHNL 90
          +++C +  F  W VQ+VN +  G  LFLHCKS+D+DLG+HNL
Sbjct: 18 IRSCSSEGFLTWNVQIVNGLSGGNTLFLHCKSEDNDLGIHNL 59

[Close]
BLAST of Lsi05G000040 vs. ExPASy TrEMBL
Match: A0A6J1CQW3 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013499 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.1e-05
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 58 QWTVQVVNNMKSGQPLFLHCKSKDDDLGVHNL 90
          +W V +VN + SGQ LF+HCKSKDDDLG+HNL
Sbjct: 30 KWRVDIVNGLSSGQTLFIHCKSKDDDLGIHNL 61

[Close]
BLAST of Lsi05G000040 vs. NCBI nr
Match: XP_004136434.3 (S-protein homolog 1-like [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 7.8e-11
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MFALGGQCYGQPGEEVPLSSWKINILNDMSKESLFLHCKSKDDDL 46
          + AL G+C GQPG EVPLSSWKINILN+M+K++LFL CKSKDDDL
Sbjct: 13 ILALIGECNGQPGAEVPLSSWKINILNEMTKDTLFLQCKSKDDDL 57

[Close]
BLAST of Lsi05G000040 vs. NCBI nr
Match: KAE8651384.1 (hypothetical protein Csa_001671 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 7.8e-11
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1   MFALGGQCYGQPGEEVPLSSWKINILNDMSKESLFLHCKSKDDDL 46
           + AL G+C GQPG EVPLSSWK+NILN+M+K+SLF+ CKSKDDDL
Sbjct: 88  ILALIGECNGQPGAEVPLSSWKVNILNEMTKDSLFIRCKSKDDDL 132

[Close]
BLAST of Lsi05G000040 vs. NCBI nr
Match: XP_004136435.1 (S-protein homolog 1-like [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 7.8e-11
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MFALGGQCYGQPGEEVPLSSWKINILNDMSKESLFLHCKSKDDDL 46
          + AL G+C GQPG EVPLSSWK+NILN+M+K+SLF+ CKSKDDDL
Sbjct: 13 ILALIGECNGQPGAEVPLSSWKVNILNEMTKDSLFIRCKSKDDDL 57

[Close]
BLAST of Lsi05G000040 vs. NCBI nr
Match: KGN60342.2 (hypothetical protein Csa_002569, partial [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 7.8e-11
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MFALGGQCYGQPGEEVPLSSWKINILNDMSKESLFLHCKSKDDDL 46
          + AL G+C GQPG EVPLSSWKINILN+M+K++LFL CKSKDDDL
Sbjct: 23 ILALIGECNGQPGAEVPLSSWKINILNEMTKDTLFLQCKSKDDDL 67

[Close]
BLAST of Lsi05G000040 vs. NCBI nr
Match: KAE8651473.1 (hypothetical protein Csa_001696 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 30/46 (65.22%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 45 LVMVQTCFAIPFEQWTVQVVNNMKSGQPLFLHCKSKDDDLGVHNLQ 91
          +VM+QTC A+PF+QW+V+VVN+MK G PL+L C+S D+DLGVHNL+
Sbjct: 18 IVMLQTCSALPFQQWSVKVVNSMKHGGPLYLRCQSADNDLGVHNLR 63

[Close]
BLAST of Lsi05G000040 vs. TAIR 10
Match: AT4G16295.1 (S-protein homologue 1 )

HSP 1 Score: 51.6 bits (122), Expect = 5.5e-07
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 0 

Query: 58  QWTVQVVNNMKSGQPLFLHCKSKDDDLGVHNLQLVNNQTYTVG 101
           +W V VVN + +G+ LF+HCKSK+DDLG  NL+  N  ++  G
Sbjct: 40  EWQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFG 82

[Close]
BLAST of Lsi05G000040 vs. TAIR 10
Match: AT4G29035.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-05
Identity = 18/43 (41.86%), Postives = 30/43 (69.77%), Query Frame = 0 

Query: 58  QWTVQVVNNMKSGQPLFLHCKSKDDDLGVHNLQLVNNQTYTVG 101
           +W V V N + +G+ LF+HCKSK++DLG  NL+ ++  ++  G
Sbjct: 40  EWQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFG 82

[Close]
BLAST of Lsi05G000040 vs. TAIR 10
Match: AT1G04645.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 45.1 bits (105), Expect = 5.2e-05
Identity = 18/33 (54.55%), Postives = 23/33 (69.70%), Query Frame = 0 

Query: 55 PFEQWTVQVVNNMKSGQPLFLHCKSKDDDLGVH 88
          PF + TV  + N+  G PL +HCKSK DDLG+H
Sbjct: 24 PFWRATVVTMTNLIGGPPLTIHCKSKQDDLGIH 56

The following BLAST results are available for this feature:
BLAST of Lsi05G000040 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4JLS07.8e-0648.84S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1[more]
Q2HQ461.5e-0441.86S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1[more]
O230207.3e-0454.55S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1[more]
BLAST of Lsi05G000040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4DWP02.1e-0652.00S-protein homolog OS=Cucumis melo OX=3656 GN=LOC103490053 PE=3 SV=1[more]
A0A6J1ESI06.2e-0651.02S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111437333 PE=3 SV=1[more]
A0A6J1DEX41.8e-0565.71S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111020182 PE=3 SV=1[more]
A0A5N6QH193.1e-0552.38S-protein homolog OS=Carpinus fangiana OX=176857 GN=FH972_002535 PE=3 SV=1[more]
A0A6J1CQW33.1e-0568.75S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111013499 PE=3 SV=1[more]
BLAST of Lsi05G000040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136434.37.8e-1175.56S-protein homolog 1-like [Cucumis sativus][more]
KAE8651384.17.8e-1173.33hypothetical protein Csa_001671 [Cucumis sativus][more]
XP_004136435.17.8e-1173.33S-protein homolog 1-like [Cucumis sativus][more]
KGN60342.27.8e-1175.56hypothetical protein Csa_002569, partial [Cucumis sativus][more]
KAE8651473.11.1e-0965.22hypothetical protein Csa_001696 [Cucumis sativus][more]
BLAST of Lsi05G000040 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G16295.15.5e-0748.84S-protein homologue 1 [more]
AT4G29035.11.0e-0541.86Plant self-incompatibility protein S1 family [more]
AT1G04645.15.2e-0554.55Plant self-incompatibility protein S1 family [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 60..100
e-value: 2.3E-8
score: 34.5
IPR010264Plant self-incompatibility S1PANTHERPTHR31232FAMILY NOT NAMEDcoord: 56..98
coord: 18..45
NoneNo IPR availablePANTHERPTHR31232:SF34PUTATIVE-RELATEDcoord: 18..45
NoneNo IPR availablePANTHERPTHR31232:SF34PUTATIVE-RELATEDcoord: 56..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G000040.1Lsi05G000040.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006974 cellular response to DNA damage stimulus