Lsi04G023420 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G023420
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr04: 30617902 .. 30618591 (+)
RNA-Seq ExpressionLsi04G023420
SyntenyLsi04G023420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTGCATCCATTGAAATGGAACCTATGGCTCGGATGGCCGTGGGGATTGAACAGAAAGCTGACAAGGTGAGCCTTCATTGTTTTTCTTACAATTGACTGGGTCTATTACTCGATAAGCCAAAGATGTGAGATGACTTTTACGTGTCTATATTTTTGAAAGGCAAGTTTCATCTTCTCAATGCTGCCTGCTTATTTCATCGAACTCTTCTCTGTGTGCTTATACAATAACCATGTTTTCTTGTCCAATTTGAAACGTGCAGTTCGCCGTGGATGCTTACAGGACTGAGAATGCAGCGTACTGATCTGTGTTGAAATTGGACGTGGACTTTGAATGTTTGAAACAGTCCTCTGTTGACAGTTCACTGGTCTCTTAGTCTTACTGTGATTCATATACTTCAATTGCATGGTTTTCCATTCAACTATGGAGTACCGTTTCGTTACGACATGTAGAAAACAATCCATACAAACAAATGACATAGCTGAACATACTCAGATGGTATAGTAATTAGTGTCTTTCTACTTCACTTTGCCTGATGAACTCGAGAGTTGAATCAGATGCGTGAATCAAATACGCATAATTAGAGATATATATATTAGGAAACAAGGATCTTGATAGGTAAAATAAGGTGTTAATATTTTTCAATAACTGAATGCATTTGATTGTCAAGAAGGGCATAATAAATCATCAAT

mRNA sequence

ACTGCATCCATTGAAATGGAACCTATGGCTCGGATGGCCGTGGGGATTGAACAGAAAGCTGACAAGTTCGCCGTGGATGCTTACAGGACTGAGAATGCAGCGTACTGATCTGTGTTGAAATTGGACGTGGACTTTGAATGTTTGAAACAGTCCTCTGTTGACAGTTCACTGGTCTCTTAGTCTTACTGTGATTCATATACTTCAATTGCATGGTTTTCCATTCAACTATGGAGTACCGTTTCGTTACGACATGTAGAAAACAATCCATACAAACAAATGACATAGCTGAACATACTCAGATGGTATAGTAATTAGTGTCTTTCTACTTCACTTTGCCTGATGAACTCGAGAGTTGAATCAGATGCGTGAATCAAATACGCATAATTAGAGATATATATATTAGGAAACAAGGATCTTGATAGGTAAAATAAGGTGTTAATATTTTTCAATAACTGAATGCATTTGATTGTCAAGAAGGGCATAATAAATCATCAAT

Coding sequence (CDS)

ACTGCATCCATTGAAATGGAACCTATGGCTCGGATGGCCGTGGGGATTGAACAGAAAGCTGACAAGTTCGCCGTGGATGCTTACAGGACTGAGAATGCAGCGTACTGA

Protein sequence

TASIEMEPMARMAVGIEQKADKFAVDAYRTENAAY
Homology
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BLAST of Lsi04G023420 vs. NCBI nr
Match: XP_023536239.1 (uncharacterized protein LOC111797469 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 52.8 bits (125), Expect = 7.1e-04
Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 1  TASIEMEPMARMAVGIEQKADKFAVDAYRTENAAY 36
          TASIE+E +ARMA+GI+++ +KFAVD YRTENAAY
Sbjct: 24 TASIEIELIARMAMGIDREIEKFAVDVYRTENAAY 58

The following BLAST results are available for this feature:
BLAST of Lsi04G023420 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi04G023420 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi04G023420 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023536239.17.1e-0471.43uncharacterized protein LOC111797469 [Cucurbita pepo subsp. pepo][more]
BLAST of Lsi04G023420 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G023420.1Lsi04G023420.1mRNA